HO063017

EST Overview
NameHO063017
Unique NameHO063017
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length457
Libraries
Library NameType
LIBEST_026409 Chickpea drought stressed cDNA SSH library AB2cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of HO063017 vs. SwissProt
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.674e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. SwissProt
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.674e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. SwissProt
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.374e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHK+F IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. SwissProt
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.428e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHK+F IKKKL KKMRQNRPIP WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. SwissProt
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.079e-18
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = -3
Query:  204 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 350
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of HO063017 vs. SwissProt
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.079e-18
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = -3
Query:  204 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 350
            M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of HO063017 vs. SwissProt
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.050e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  201 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 350
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of HO063017 vs. SwissProt
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.050e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  201 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 350
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of HO063017 vs. SwissProt
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.050e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  201 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 350
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of HO063017 vs. SwissProt
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.050e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -3
Query:  201 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 350
            M SHKTFRIK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of HO063017 vs. TrEMBL
Match: Q6KAJ8_ORYSJ (Putative 60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=OJ1004_E04.27 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.098e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   68 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 118          
BLAST of HO063017 vs. TrEMBL
Match: Q0DWT0_ORYSJ (Os02g0797200 protein OS=Oryza sativa subsp. japonica GN=Os02g0797200 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.098e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: C5XUH6_SORBI (Putative uncharacterized protein Sb04g036030 OS=Sorghum bicolor GN=Sb04g036030 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.098e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: B6SP00_MAIZE (60S ribosomal protein L39 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.098e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: A2XAK5_ORYSI (60S ribosomal protein l39 OS=Oryza sativa subsp. indica GN=OsI_09286 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.098e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: D7T537_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_149.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001055001 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.872e-23
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -3
Query:  198 SKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 356
            SKMPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   20 SKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 72          
BLAST of HO063017 vs. TrEMBL
Match: D7T535_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_149.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001053001 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.872e-23
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -3
Query:  198 SKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 356
            SKMPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:   18 SKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 70          
BLAST of HO063017 vs. TrEMBL
Match: Q5SMI4_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=OSJNBb0019L07.23 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.194e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTF+IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: A2YA08_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21918 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.194e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHKTF+IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TrEMBL
Match: Q0DWT2_ORYSJ (Os02g0796900 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0796900 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.171e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -3
Query:  198 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 347
            PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 50          
BLAST of HO063017 vs. TAIR peptide
Match: AT4G31985.1 (| Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51)

HSP 1 Score: 104.375 bits (259), Expect = 2.855e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHK+F IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TAIR peptide
Match: AT3G02190.1 (| Symbols: | Ribosomal protein L39 family protein | chr3:406005-406342 REVERSE LENGTH=51)

HSP 1 Score: 100.523 bits (249), Expect = 4.122e-22
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -3
Query:  198 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 350
            MPSHK+F IKKKL KKMRQNRPIP WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of HO063017 vs. TAIR peptide
Match: AT2G25210.1 (| Symbols: | Ribosomal protein L39 family protein | chr2:10740157-10740379 FORWARD LENGTH=44)

HSP 1 Score: 90.8929 bits (224), Expect = 3.266e-19
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = -3
Query:  198 IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 326
            IKKKL KKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    2 IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44          
The following BLAST results are available for this feature:
BLAST of HO063017 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL39_ORYSJ6.674e-25100.0060S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE6.674e-25100.0060S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL391_ARATH2.374e-2290.2060S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL392_ARATH3.428e-2188.2460S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR2.079e-1881.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY2.079e-1881.6360S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT6.050e-1880.0060S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE6.050e-1880.0060S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]
RL39_ICTPU6.050e-1880.0060S ribosomal protein L39 OS=Ictalurus punctatus G... [more]
RL39_HUMAN6.050e-1880.0060S ribosomal protein L39 OS=Homo sapiens GN=RPL39... [more]
back to top
BLAST of HO063017 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q6KAJ8_ORYSJ1.098e-23100.00Putative 60S ribosomal protein L39 OS=Oryza sativa... [more]
Q0DWT0_ORYSJ1.098e-23100.00Os02g0797200 protein OS=Oryza sativa subsp. japoni... [more]
C5XUH6_SORBI1.098e-23100.00Putative uncharacterized protein Sb04g036030 OS=So... [more]
B6SP00_MAIZE1.098e-23100.0060S ribosomal protein L39 OS=Zea mays PE=4 SV=1[more]
A2XAK5_ORYSI1.098e-23100.0060S ribosomal protein l39 OS=Oryza sativa subsp. i... [more]
D7T537_VITVI1.872e-2396.23Whole genome shotgun sequence of line PN40024, sca... [more]
D7T535_VITVI1.872e-2396.23Whole genome shotgun sequence of line PN40024, sca... [more]
Q5SMI4_ORYSJ3.194e-2398.0460S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
A2YA08_ORYSI3.194e-2398.04Putative uncharacterized protein OS=Oryza sativa s... [more]
Q0DWT2_ORYSJ4.171e-23100.00Os02g0796900 protein (Fragment) OS=Oryza sativa su... [more]
back to top
BLAST of HO063017 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G31985.12.855e-2390.20| Symbols: | Ribosomal protein L39 family protein... [more]
AT3G02190.14.122e-2288.24| Symbols: | Ribosomal protein L39 family protein... [more]
AT2G25210.13.266e-1993.02| Symbols: | Ribosomal protein L39 family protein... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 45..50
score
IPR000077Ribosomal protein L39eGENE3D1.10.1620.10no descriptioncoord: 12..59
score: 5.8
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 11..60
score: 7.3
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 18..59
score: 3.9
IPR000077Ribosomal protein L39eSUPERFAMILY48662Ribosomal protein L39ecoord: 12..60
score: 2.2
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 39..55
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO063017 ID=HO063017; Name=HO063017; organism=Cicer arietinum; type=EST; length=457bp
ATGTTAAACAAAATTAAAATTGCGAGTCAAATCATCATAGTCACTACATA
AAATAAAATAAGATGTTCAAAACCAAAAACCAATTCATTAAATAAATAAC
ACTGATTTCAATCCCAACATTAAAAACACCTAAACAAAAGTTGTTGTCTG
ATATCAAAAGAAAAATAAAAACAAAACCGAATAATGAAAGAACCTCAAAA
GCCAAGCTTGGTGCGACGCCAGTGACGACGCTTTGCATTGTACCTGATGG
TGTTGTCGGTTCGCATACGGATCCAATAAGGGATAGGTCTGTTCTGTCTC
ATCTTCTTAGCAAGTTTCTTTTTTATTCTGAATGTCTTGTGTGAAGGCAT
TTTGGATCCCTCCTCCGAGTTCGAGTGTCACTGGGAAACGAGAACGAAAG
GCGCCGCCAATAAAACCCTAAATAACTCTTGTTTTATATCTACGCCCCCG
CGTACCT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000077Ribosomal_eL39
IPR020083Ribosomal_L39_CS