GR406888

EST Overview


Name	GR406888
Unique Name	GR406888
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	432

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR406888 vs. SwissProt
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.292e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CT LSPGGWPPIL+LPI K+IPGSIWFSIKVILFLFLYIWV
Sbjct:  241 GLCTSLSPGGWPPILDLPISKKIPGSIWFSIKVILFLFLYIWV 283

[Close]

BLAST of GR406888 vs. SwissProt
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera bertiana GN=ND1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.261e-15
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CTLL  GGW PIL+LPIFK+IPGSIWFSIKVI FLFLYIWV
Sbjct:  247 GLCTLLFLGGWLPILDLPIFKKIPGSIWFSIKVIFFLFLYIWV 289

[Close]

BLAST of GR406888 vs. SwissProt
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 4.596e-14
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CTL   GGW PIL+LPIFK+IPGSIWFSIKV+ FLFLYIWV
Sbjct:  241 GLCTLFFLGGWLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWV 283

[Close]

BLAST of GR406888 vs. SwissProt
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.082e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CTLL  GGW PIL+LPI K+IP SIWFSIKV+LFLFLYIWV
Sbjct:  241 GLCTLLFLGGWLPILDLPISKKIPCSIWFSIKVLLFLFLYIWV 283

[Close]

BLAST of GR406888 vs. SwissProt
Match: NU1M_MARPO (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.479e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1

Query:  310 CTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            CTLL  GGW PIL++PIF+ IPGSIWFSIKV+ FLF+YIWV
Sbjct:  246 CTLLFLGGWLPILDIPIFQVIPGSIWFSIKVLFFLFVYIWV 286

[Close]

BLAST of GR406888 vs. TrEMBL
Match: A5BTM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042143 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.763e-21
Identity = 53/73 (72.60%), Postives = 53/73 (72.60%), Query Frame = -2

Query:  141 MGRFRIGGQPPGESNVHGPGE*GCSSVDRLSGLIGGGFTPFSKEPYVRLSRHTAPSRKKDPPFPLTNGSSNQP 359
            MGR RIGGQPPGESNVHGPG               GG TPFSKEPYV LSRHTAPSR KD PFPLTNGSSNQP
Sbjct:    1 MGRSRIGGQPPGESNVHGPG---------------GGITPFSKEPYVTLSRHTAPSRNKDLPFPLTNGSSNQP 58

[Close]

BLAST of GR406888 vs. TrEMBL
Match: B9T901_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2104750 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.310e-20
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = -1

Query:  136 MQLRGPLVGPDRWWFHTLFKGTVRETLASYGSVPEEG-PPLSFDQRVLEPTFP 291
            MQLRGPLVGPDRWW+HTL KGTVR+TLASYGS PE G PP SFDQRVLEPTFP
Sbjct:    1 MQLRGPLVGPDRWWYHTLLKGTVRDTLASYGSAPESGPPPFSFDQRVLEPTFP 53

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q37475_SOYBN (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Glycine max GN=nad1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.015e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCT LSPGGWPPIL+LPIFKRIPGSIWFSIKVILFLFLYIWV
Sbjct:   21 GPCTSLSPGGWPPILDLPIFKRIPGSIWFSIKVILFLFLYIWV 63

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q37693_VICFA (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Vicia faba GN=nad1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.538e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTLLSPGGWPPIL+LPI KRIPGSIWFSIKVI+FLFLYIWV
Sbjct:   22 GPCTLLSPGGWPPILDLPILKRIPGSIWFSIKVIMFLFLYIWV 64

[Close]

BLAST of GR406888 vs. TrEMBL
Match: B9U3K2_CARPA (NADH-ubiquinone oxidoreductase chain 1 OS=Carica papaya GN=nad1 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.623e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTLLSPGGWPPIL+LPIFK+IPGSIWFSIKVILF FLYIWV
Sbjct:  241 GPCTLLSPGGWPPILDLPIFKKIPGSIWFSIKVILFPFLYIWV 283

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q2V2T4_ARATH (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Arabidopsis thaliana GN=nad1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.967e-17
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTL  PGGWPPIL+LPIFK+IPGSIWFSIKV+LFLFLYIWV
Sbjct:  241 GPCTLFFPGGWPPILDLPIFKKIPGSIWFSIKVLLFLFLYIWV 283

[Close]

BLAST of GR406888 vs. TrEMBL
Match: A7KNG7_ARATH (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.967e-17
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTL  PGGWPPIL+LPIFK+IPGSIWFSIKV+LFLFLYIWV
Sbjct:  220 GPCTLFFPGGWPPILDLPIFKKIPGSIWFSIKVLLFLFLYIWV 262

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q37565_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera bertiana GN=nad1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.900e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CT LSPGGWPPIL+LPIFK+IPGSIWFSIKVILFLFLYIWV
Sbjct:  247 GLCTSLSPGGWPPILDLPIFKKIPGSIWFSIKVILFLFLYIWV 289

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q5U6E2_BETVU (NADH-ubiquinone oxidoreductase chain 1 OS=Beta vulgaris subsp. vulgaris GN=nad1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.102e-15
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CT LSPGGWPPIL+LPI KRIPGSIWFSIKVILFLFLYIWV
Sbjct:  241 GLCTSLSPGGWPPILDLPISKRIPGSIWFSIKVILFLFLYIWV 283

[Close]

BLAST of GR406888 vs. TrEMBL
Match: Q9XJZ1_SOLTU (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Solanum tuberosum GN=nad1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.455e-15
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            G CT LSPGGWPPIL+LPI K+IPGSIWFSIKVILFLFLYIWV
Sbjct:    1 GLCTSLSPGGWPPILDLPISKKIPGSIWFSIKVILFLFLYIWV 43

[Close]

BLAST of GR406888 vs. TAIR peptide
Match: ATMG01275.1 (| Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325)

HSP 1 Score: 89.7373 bits (221), Expect = 6.428e-19
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTL  PGGWPPIL+LPIFK+IPGSIWFSIKV+LFLFLYIWV
Sbjct:  241 GPCTLFFPGGWPPILDLPIFKKIPGSIWFSIKVLLFLFLYIWV 283

[Close]

BLAST of GR406888 vs. TAIR peptide
Match: ATMG00516.1 (| Symbols: NAD1C, NAD1 | NADH dehydrogenase 1C | chrM:143219-147048 REVERSE LENGTH=325)

HSP 1 Score: 89.7373 bits (221), Expect = 6.428e-19
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTL  PGGWPPIL+LPIFK+IPGSIWFSIKV+LFLFLYIWV
Sbjct:  241 GPCTLFFPGGWPPILDLPIFKKIPGSIWFSIKVLLFLFLYIWV 283

[Close]

BLAST of GR406888 vs. TAIR peptide
Match: ATMG01120.1 (| Symbols: NAD1B, NAD1 | NADH dehydrogenase 1B | chrM:287917-289083 REVERSE LENGTH=325)

HSP 1 Score: 89.7373 bits (221), Expect = 6.428e-19
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1

Query:  304 GPCTLLSPGGWPPILNLPIFKRIPGSIWFSIKVILFLFLYIWV 432
            GPCTL  PGGWPPIL+LPIFK+IPGSIWFSIKV+LFLFLYIWV
Sbjct:  241 GPCTLFFPGGWPPILDLPIFKKIPGSIWFSIKVLLFLFLYIWV 283

The following BLAST results are available for this feature:

BLAST of GR406888 vs. SwissProt
BLAST of GR406888 vs. TrEMBL
BLAST of GR406888 vs. TAIR peptide

BLAST of GR406888 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
NU1M_PETHY	1.292e-16	88.37	NADH-ubiquinone oxidoreductase chain 1 OS=Petunia ...	[more]
NU1M_OENBE	9.261e-15	83.72	NADH-ubiquinone oxidoreductase chain 1 OS=Oenother...	[more]
NU1M_ARATH	4.596e-14	79.07	NADH-ubiquinone oxidoreductase chain 1 OS=Arabidop...	[more]
NU1M_WHEAT	5.082e-13	79.07	NADH-ubiquinone oxidoreductase chain 1 OS=Triticum...	[more]
NU1M_MARPO	1.479e-12	75.61	NADH-ubiquinone oxidoreductase chain 1 OS=Marchant...	[more]

BLAST of GR406888 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A5BTM4_VITVI	1.763e-21	72.60	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9T901_RICCO	3.310e-20	86.79	Putative uncharacterized protein OS=Ricinus commun...	[more]
Q37475_SOYBN	9.015e-18	95.35	NADH-ubiquinone oxidoreductase chain 1 (Fragment) ...	[more]
Q37693_VICFA	1.538e-17	93.02	NADH-ubiquinone oxidoreductase chain 1 (Fragment) ...	[more]
B9U3K2_CARPA	2.623e-17	93.02	NADH-ubiquinone oxidoreductase chain 1 OS=Carica p...	[more]
Q2V2T4_ARATH	9.967e-17	88.37	NADH-ubiquinone oxidoreductase chain 1 (Fragment) ...	[more]
A7KNG7_ARATH	9.967e-17	88.37	NADH-ubiquinone oxidoreductase chain 1 (Fragment) ...	[more]
Q37565_OENBE	2.900e-16	90.70	NADH-ubiquinone oxidoreductase chain 1 OS=Oenother...	[more]
Q5U6E2_BETVU	1.102e-15	90.70	NADH-ubiquinone oxidoreductase chain 1 OS=Beta vul...	[more]
Q9XJZ1_SOLTU	2.455e-15	88.37	NADH-ubiquinone oxidoreductase chain 1 (Fragment) ...	[more]

BLAST of GR406888 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
ATMG01275.1	6.428e-19	88.37	\| Symbols: NAD1A, NAD1, ND1 \| NADH dehydrogenase 1...	[more]
ATMG00516.1	6.428e-19	88.37	\| Symbols: NAD1C, NAD1 \| NADH dehydrogenase 1C \| c...	[more]
ATMG01120.1	6.428e-19	88.37	\| Symbols: NAD1B, NAD1 \| NADH dehydrogenase 1B \| c...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 30..45 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR406888 ID=GR406888; Name=GR406888; organism=Cicer arietinum; type=EST; length=432bp
CGTTGCGGCAGCTTCCGCGCCAGCAAAATACGGACGGCGAAGCCAAAGCA
ATACTAAACAAGCGAGAAAAGCCCTATATATTCTATTACTCAAGCCTAAA
CTTATTGAAAACTAAAGCGCTAACGAGCAAAAAAACGGGAAGGTTGGTTC
GAGGACCCGTTGGTCAAAGGAAAGGGGGGGTCCTTCTTCCGGGACGGAGC
CGTATGACGCGAGAGTCTCACGTACGGTTCCTTTGAAAAGGGTGTGAAAC
CACCACCTATCAGGCCCGACAAGCGGTCCACGGAGCTGCATCCCTACTCA
CCTGGTCCATGCACATTGCTCTCTCCAGGAGGTTGGCCGCCTATCCTAAA
TCTTCCCATTTTCAAAAGGATCCCGGGCTCGATCTGGTTTAGTATCAAGG
TGATTCTGTTTCTGTTTCTATATATATGGGTC

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