GR420608

EST Overview


Name	GR420608
Unique Name	GR420608
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	338

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR420608 vs. TrEMBL
Match: B9RJM4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1036560 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.217e-7
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = -3

Query:   58 SQCFLQIFLLMITIFQISSAARNLNELVQDQFQLLHYAIRQTQRSIISVNLIWH 219
            S C L++F+L I+IFQIS AAR LNELVQDQ QLL Y         IS+NLIW+
Sbjct:    6 SHCVLKLFIL-ISIFQISLAARKLNELVQDQPQLLRYHNGPLLSGKISINLIWY 58

The following BLAST results are available for this feature:

BLAST of GR420608 vs. TrEMBL

BLAST of GR420608 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B9RJM4_RICCO	7.217e-7	59.26	Putative uncharacterized protein OS=Ricinus commun...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 19..31 score: NAcoord: 43..54 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420608 ID=GR420608; Name=GR420608; organism=Cicer arietinum; type=EST; length=338bp
AAAAATTGAGGTGAAGAGATGGTTTGAAGTTTATGATGGCTTTCTGCCAT
AAAATCGGTGCCAAATTAAATTCACGGAGATAATGGACCGTTGTGTTTGC
CGTATAGCGTAGTGAAGTAGCTGAAACTGATCTTGAACCAGCTCGTTCAG
ATTTCTAGCAGCTGAAGAAATCTGAAAAATAGTGATCATAAGAAGAAAGA
TTTGGAGAAAACATTGAGAAACCATTTTTAAAATTTGAGACTAGAAAAGA
AAAAACCAAAGAAGAAAATTCGATGGATTTTTTTAGAGAAATAAATGAAT
AGATAAGAGAAGAAACTGTATTCTAAGTTGTATTTGTC

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