GR913369

EST Overview


Name	GR913369
Unique Name	GR913369
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	463

Libraries


Library Name	Type
LIBEST_024968 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 7.965e-29
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKIWSKMKGLKIPK GDMSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQSLMKQMGS KD
Sbjct:  422 YKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD 485

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.965e-29
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKIWSKMKGLKIPKKG+MSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  422 YKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 485

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.708e-27
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKI+SKMKGLKIPKKGDMS+LSRNMNAQ+MSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  422 YKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 485

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR542_HORVU (Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare GN=SRP54-2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.983e-21
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMG 203
            YKRLAK+WSKMKGLK+PK G MS LS+N+N Q M+K LPPQ+LKQ+GGMGGLQ+LMKQMG
Sbjct:  422 YKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR541_HORVU (Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare GN=SRP54-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.983e-21
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMG 203
            YKRLAK+WSKMKGLK+PK G MS LS+N+N Q M+K LPPQ+LKQ+GGMGGLQ+LMKQMG
Sbjct:  422 YKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQMG 481

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.153e-19
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRL  +W K+KGLK  +KG+MSALS+N N+Q +SK+LP QMLKQIGGM GLQSLMKQMGS KD
Sbjct:  422 YKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMGSGKD 485

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR541_ARATH (Signal recognition particle 54 kDa protein 1 OS=Arabidopsis thaliana GN=SRP-54A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.592e-13
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKR+AK    MKG+KIPK GDMS            K++PPQMLKQ+GGM GLQSLMKQMGS KD
Sbjct:  421 YKRIAKT---MKGIKIPKNGDMS------------KVIPPQMLKQMGGMSGLQSLMKQMGSAKD 469

[Close]

BLAST of GR913369 vs. SwissProt
Match: SR543_HORVU (Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare GN=SRP54-3 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.854e-10
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLK-IPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAK+WSK    K IP+ G MSA +     Q M K++PPQ+++Q+GG  GL++L+KQ+G  KD
Sbjct:  421 YKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEALLKQLGGGKD 481

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B9RV94_RICCO (Signal recognition particle 54 kD protein, putative OS=Ricinus communis GN=RCOM_0901100 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.241e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKIWSKMKGLKIPKKG+MSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  422 YKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 485

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B9IG64_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_257619 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.241e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKIWSKMKGLKIPKKG+MSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  420 YKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 483

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B9GIF9_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_172222 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.611e-27
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAK+WSKMKGLKIPKKG+MS+LSRNMNAQHMSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  422 YKRLAKVWSKMKGLKIPKKGEMSSLSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 485

[Close]

BLAST of GR913369 vs. TrEMBL
Match: A9PHG6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.611e-27
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAK+WSKMKGLKIPKKG+MS+LSRNMNAQHMSK+LPPQMLKQIGGMGGLQ+LMKQMGS KD
Sbjct:  422 YKRLAKVWSKMKGLKIPKKGEMSSLSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKD 485

[Close]

BLAST of GR913369 vs. TrEMBL
Match: Q8S1I8_ORYSJ (Os01g0772800 protein OS=Oryza sativa subsp. japonica GN=P0695H10.26 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.057e-26
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGS 206
            YKRLAKIWSKMKGLKIPKKG+MSALSRNMN QHMSK+LPPQMLKQIGGMGGLQSLMKQMGS
Sbjct:  422 YKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS 482

[Close]

BLAST of GR913369 vs. TrEMBL
Match: D7KD74_ARALY (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_891728 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.057e-26
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 3

Query:   24 YKRL-AKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRL AKIWSKMKGLKIPK GDMSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQSLMKQMGS KD
Sbjct:  422 YKRLLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD 486

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B8AA60_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03915 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.057e-26
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGS 206
            YKRLAKIWSKMKGLKIPKKG+MSALSRNMN QHMSK+LPPQMLKQIGGMGGLQSLMKQMGS
Sbjct:  422 YKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS 482

[Close]

BLAST of GR913369 vs. TrEMBL
Match: C5XLK5_SORBI (Putative uncharacterized protein Sb03g036030 OS=Sorghum bicolor GN=Sb03g036030 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.893e-26
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGS 206
            YKRLAKIW KMKGLKIPKKG+MSALSRNMN QHMSK+LPPQMLKQIGGMGGLQSLMKQMGS
Sbjct:  422 YKRLAKIWGKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS 482

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B6U684_MAIZE (Ferredoxin-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.893e-26
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGS 206
            YKRLAKIW KMKGLKIPKKG+MSALSRNMN QHMSK+LPPQMLKQIGGMGGLQSLMKQMGS
Sbjct:  134 YKRLAKIWGKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS 194

[Close]

BLAST of GR913369 vs. TrEMBL
Match: B4FW12_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.893e-26
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGS 206
            YKRLAKIW KMKGLKIPKKG+MSALSRNMN QHMSK+LPPQMLKQIGGMGGLQSLMKQMGS
Sbjct:    5 YKRLAKIWGKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQMGS 65

[Close]

BLAST of GR913369 vs. TAIR peptide
Match: AT1G48900.1 (| Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495)

HSP 1 Score: 125.946 bits (315), Expect = 9.286e-30
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRLAKIWSKMKGLKIPK GDMSALSRNMNAQHMSK+LPPQMLKQIGGMGGLQSLMKQMGS KD
Sbjct:  422 YKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSGKD 485

[Close]

BLAST of GR913369 vs. TAIR peptide
Match: AT5G49500.1 (| Symbols: | Signal recognition particle, SRP54 subunit protein | chr5:20077556-20080206 REVERSE LENGTH=497)

HSP 1 Score: 95.5153 bits (236), Expect = 1.344e-20
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKRL  +W K+KGLK  +KG+MSALS+N N+Q +SK+LP QMLKQIGGM GLQSLMKQMGS KD
Sbjct:  424 YKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLMKQMGSGKD 487

[Close]

BLAST of GR913369 vs. TAIR peptide
Match: AT1G15310.1 (| Symbols: ATHSRP54A, SRP54-1 | signal recognition particle 54 kDa subunit | chr1:5269173-5271947 REVERSE LENGTH=479)

HSP 1 Score: 73.9442 bits (180), Expect = 4.188e-14
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = 3

Query:   24 YKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKILPPQMLKQIGGMGGLQSLMKQMGSTKD 215
            YKR+AK    MKG+KIPK GDMS            K++PPQMLKQ+GGM GLQSLMKQMGS KD
Sbjct:  421 YKRIAKT---MKGIKIPKNGDMS------------KVIPPQMLKQMGGMSGLQSLMKQMGSAKD 469

The following BLAST results are available for this feature:

BLAST of GR913369 vs. SwissProt
BLAST of GR913369 vs. TrEMBL
BLAST of GR913369 vs. TAIR peptide

BLAST of GR913369 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
SR543_ARATH	7.965e-29	95.31	Signal recognition particle 54 kDa protein 3 OS=Ar...	[more]
SR542_SOLLC	7.965e-29	93.75	Signal recognition particle 54 kDa protein 2 OS=So...	[more]
SR541_SOLLC	5.708e-27	90.63	Signal recognition particle 54 kDa protein 1 OS=So...	[more]
SR542_HORVU	7.983e-21	76.67	Signal recognition particle 54 kDa protein 2 OS=Ho...	[more]
SR541_HORVU	7.983e-21	76.67	Signal recognition particle 54 kDa protein 1 OS=Ho...	[more]
SR542_ARATH	1.153e-19	71.88	Signal recognition particle 54 kDa protein 2 OS=Ar...	[more]
SR541_ARATH	3.592e-13	62.50	Signal recognition particle 54 kDa protein 1 OS=Ar...	[more]
SR543_HORVU	4.854e-10	50.77	Signal recognition particle 54 kDa protein 3 OS=Ho...	[more]

BLAST of GR913369 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RV94_RICCO	1.241e-27	93.75	Signal recognition particle 54 kD protein, putativ...	[more]
B9IG64_POPTR	1.241e-27	93.75	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9GIF9_POPTR	3.611e-27	90.63	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
A9PHG6_POPTR	3.611e-27	90.63	Putative uncharacterized protein OS=Populus tricho...	[more]
Q8S1I8_ORYSJ	3.057e-26	95.08	Os01g0772800 protein OS=Oryza sativa subsp. japoni...	[more]
D7KD74_ARALY	3.057e-26	93.85	Signal recognition particle 54 kDa protein 3 OS=Ar...	[more]
B8AA60_ORYSI	3.057e-26	95.08	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5XLK5_SORBI	8.893e-26	93.44	Putative uncharacterized protein Sb03g036030 OS=So...	[more]
B6U684_MAIZE	8.893e-26	93.44	Ferredoxin-1 OS=Zea mays PE=2 SV=1	[more]
B4FW12_MAIZE	8.893e-26	93.44	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]

BLAST of GR913369 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G48900.1	9.286e-30	95.31	\| Symbols: \| Signal recognition particle, SRP54 s...	[more]
AT5G49500.1	1.344e-20	71.88	\| Symbols: \| Signal recognition particle, SRP54 s...	[more]
AT1G15310.1	4.188e-14	62.50	\| Symbols: ATHSRP54A, SRP54-1 \| signal recognition...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 72..80 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR913369 ID=GR913369; Name=GR913369; organism=Cicer arietinum; type=EST; length=463bp
GATTAGCGTGGTCGCGGCCGAGGTACAAACGTCTTGCAAAGATATGGAGC
AAAATGAAAGGACTAAAAATTCCAAAGAAGGGAGACATGAGTGCCTTATC
CCGAAATATGAATGCCCAGCACATGAGCAAAATCCTCCCTCCACAGATGC
TAAAGCAAATTGGAGGTATGGGTGGGTTACAAAGCTTGATGAAACAAATG
GGATCTACTAAGGACATGATGGGAATGTTCGGTGGTGGCGGGGATAACTA
AATTCTTAGTGGCATTTGAGCTGAGGTTTTTGTTTATGATAACTTACTCT
TATGCCTTTATAAGAGTTAGATTCATCATTTCTTCTAGCTGCAGAAATCT
CAATGGGTGGAATAGTTCATTACCTTGGCTTTTTTCTTTTTGTGTAAAAC
TATACTTTTGTCCCTATTTCTGTTGTATATTTATTAGTCTTAAGATACAG
TCAAAGAATTTGT

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