GR406667

EST Overview
NameGR406667
Unique NameGR406667
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length229
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR406667 vs. TrEMBL
Match: Q9LZY9_ARATH (Beta-tubulin cofactor-like protein OS=Arabidopsis thaliana GN=T4C21_150 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+  V L
Sbjct:  649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723          
BLAST of GR406667 vs. TrEMBL
Match: Q8L5R3_ARATH (Tubulin folding cofactor D OS=Arabidopsis thaliana GN=At3g60740 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+  V L
Sbjct:  649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723          
BLAST of GR406667 vs. TrEMBL
Match: D7LRU0_ARALY (Tubulin folding cofactor D OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907605 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+  V L
Sbjct:  649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723          
BLAST of GR406667 vs. TrEMBL
Match: D7KRV6_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675871 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.707e-24
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQC YVL +D+ K +A +VPAIEKARLYRGKGGEIMR +VSRFIECIS+  V L
Sbjct:  666 SSDLCMRHGATLAAGEVVLALHQCGYVLSADSHKRMAGIVPAIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 740          
BLAST of GR406667 vs. TrEMBL
Match: B9RD93_RICCO (Beta-tubulin cofactor d, putative OS=Ricinus communis GN=RCOM_1611170 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.490e-23
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQ +Y L SD Q ++A +VPAIEKARLYRGKGGEIMR++VSRFIECIS+  + L
Sbjct:  641 SSDLCMRHGATLAVGEVVLALHQHDYTLASDRQNSVAGIVPAIEKARLYRGKGGEIMRSAVSRFIECISLCHLTL 715          
BLAST of GR406667 vs. TrEMBL
Match: D7U7W2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027657001 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.648e-22
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = -3
Query:   18 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISI 227
            S DLCMRHG+TLA GELV ALHQC + L +D Q     +V AIEKARLYRGKGGEIMRA+VSRFIECIS+
Sbjct:  645 SSDLCMRHGATLAAGELVLALHQCGFALSTDKQTRFVGIVTAIEKARLYRGKGGEIMRAAVSRFIECISL 714          
BLAST of GR406667 vs. TrEMBL
Match: B9IBX8_POPTR (Tubulin folding cofactor (Fragment) OS=Populus trichocarpa GN=TFCFD PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.928e-22
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = -3
Query:   21 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECIS 227
            S DLCMRHG+TLAT E+V ALH+ +Y L ++ QK +A VVPAIEKARLYRGKGGEIMR++VSRFIECIS
Sbjct:  629 SSDLCMRHGATLATAEIVLALHRFDYALATEKQKQVAGVVPAIEKARLYRGKGGEIMRSAVSRFIECIS 697          
BLAST of GR406667 vs. TrEMBL
Match: C5WWB3_SORBI (Putative uncharacterized protein Sb01g017540 OS=Sorghum bicolor GN=Sb01g017540 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.420e-20
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLC RHG+TLA GE+   L+Q  +   +D QK LA +VPAIEKARLYRGKGGEIMR++VSRFI CISI  ++L
Sbjct:  623 SSDLCTRHGATLAAGEVALKLYQLGFTFTTDMQKALAGIVPAIEKARLYRGKGGEIMRSAVSRFISCISIAGISL 697          
BLAST of GR406667 vs. TrEMBL
Match: Q8LN73_ORYSJ (Putative tubulin-folding cofactor OS=Oryza sativa subsp. japonica GN=OSJNBb0091N21.28 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.683e-19
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLC RHG+TLA GE+   L+Q  +   +D QK L+ +VPAIEKARLYRGKGGEIMR++VSRFI CIS+  ++L
Sbjct:  490 SSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKALSGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISL 564          
BLAST of GR406667 vs. TrEMBL
Match: Q337D2_ORYSJ (Tubulin folding cofactor D, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g36490 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.683e-19
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLC RHG+TLA GE+   L+Q  +   +D QK L+ +VPAIEKARLYRGKGGEIMR++VSRFI CIS+  ++L
Sbjct:  520 SSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKALSGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISL 594          
BLAST of GR406667 vs. TAIR peptide
Match: AT3G60740.1 (| Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254)

HSP 1 Score: 116.316 bits (290), Expect = 3.856e-27
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:    3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227
            S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+  V L
Sbjct:  649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723          
The following BLAST results are available for this feature:
BLAST of GR406667 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9LZY9_ARATH1.001e-2473.33Beta-tubulin cofactor-like protein OS=Arabidopsis ... [more]
Q8L5R3_ARATH1.001e-2473.33Tubulin folding cofactor D OS=Arabidopsis thaliana... [more]
D7LRU0_ARALY1.001e-2473.33Tubulin folding cofactor D OS=Arabidopsis lyrata s... [more]
D7KRV6_ARALY1.707e-2473.33Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
B9RD93_RICCO5.490e-2370.67Beta-tubulin cofactor d, putative OS=Ricinus commu... [more]
D7U7W2_VITVI4.648e-2272.86Whole genome shotgun sequence of line PN40024, sca... [more]
B9IBX8_POPTR7.928e-2273.91Tubulin folding cofactor (Fragment) OS=Populus tri... [more]
C5WWB3_SORBI7.420e-2064.00Putative uncharacterized protein Sb01g017540 OS=So... [more]
Q8LN73_ORYSJ3.683e-1961.33Putative tubulin-folding cofactor OS=Oryza sativa ... [more]
Q337D2_ORYSJ3.683e-1961.33Tubulin folding cofactor D, putative, expressed OS... [more]
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BLAST of GR406667 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G60740.13.856e-2773.33| Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat s... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 36..44
score
NoneNo IPR availablePANTHERPTHR12658BETA-TUBULIN COFACTOR Dcoord: 1..75
score: 8.5

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR406667 ID=GR406667; Name=GR406667; organism=Cicer arietinum; type=EST; length=229bp
GGTAATGCCACTTTAAATATGGAGATGCATTCAATAAAACGAGAAACAGA
TGCACGCATTATTTCTCCTCCCTTTCCACGATAAAGCCGTGCTTTCTCAA
TAGCAGGAACAACACTTGCAAGAGTTTTCTGATTATCTGAGGGAAGAACA
TAATTGCATTGATGTAAAGCAAAAACAAGTTCCCCAGTTGCCAATGTTGA
ACCATGACGCATGCACAAATCAAATGAAA
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