GR406667
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR406667 vs. TrEMBL
Match: Q9LZY9_ARATH (Beta-tubulin cofactor-like protein OS=Arabidopsis thaliana GN=T4C21_150 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+ V L Sbjct: 649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723
BLAST of GR406667 vs. TrEMBL
Match: Q8L5R3_ARATH (Tubulin folding cofactor D OS=Arabidopsis thaliana GN=At3g60740 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+ V L Sbjct: 649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723
BLAST of GR406667 vs. TrEMBL
Match: D7LRU0_ARALY (Tubulin folding cofactor D OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907605 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.001e-24 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+ V L Sbjct: 649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723
BLAST of GR406667 vs. TrEMBL
Match: D7KRV6_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675871 PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.707e-24 Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQC YVL +D+ K +A +VPAIEKARLYRGKGGEIMR +VSRFIECIS+ V L Sbjct: 666 SSDLCMRHGATLAAGEVVLALHQCGYVLSADSHKRMAGIVPAIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 740
BLAST of GR406667 vs. TrEMBL
Match: B9RD93_RICCO (Beta-tubulin cofactor d, putative OS=Ricinus communis GN=RCOM_1611170 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.490e-23 Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQ +Y L SD Q ++A +VPAIEKARLYRGKGGEIMR++VSRFIECIS+ + L Sbjct: 641 SSDLCMRHGATLAVGEVVLALHQHDYTLASDRQNSVAGIVPAIEKARLYRGKGGEIMRSAVSRFIECISLCHLTL 715
BLAST of GR406667 vs. TrEMBL
Match: D7U7W2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027657001 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.648e-22 Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = -3 Query: 18 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISI 227 S DLCMRHG+TLA GELV ALHQC + L +D Q +V AIEKARLYRGKGGEIMRA+VSRFIECIS+ Sbjct: 645 SSDLCMRHGATLAAGELVLALHQCGFALSTDKQTRFVGIVTAIEKARLYRGKGGEIMRAAVSRFIECISL 714
BLAST of GR406667 vs. TrEMBL
Match: B9IBX8_POPTR (Tubulin folding cofactor (Fragment) OS=Populus trichocarpa GN=TFCFD PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.928e-22 Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = -3 Query: 21 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECIS 227 S DLCMRHG+TLAT E+V ALH+ +Y L ++ QK +A VVPAIEKARLYRGKGGEIMR++VSRFIECIS Sbjct: 629 SSDLCMRHGATLATAEIVLALHRFDYALATEKQKQVAGVVPAIEKARLYRGKGGEIMRSAVSRFIECIS 697
BLAST of GR406667 vs. TrEMBL
Match: C5WWB3_SORBI (Putative uncharacterized protein Sb01g017540 OS=Sorghum bicolor GN=Sb01g017540 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.420e-20 Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLC RHG+TLA GE+ L+Q + +D QK LA +VPAIEKARLYRGKGGEIMR++VSRFI CISI ++L Sbjct: 623 SSDLCTRHGATLAAGEVALKLYQLGFTFTTDMQKALAGIVPAIEKARLYRGKGGEIMRSAVSRFISCISIAGISL 697
BLAST of GR406667 vs. TrEMBL
Match: Q8LN73_ORYSJ (Putative tubulin-folding cofactor OS=Oryza sativa subsp. japonica GN=OSJNBb0091N21.28 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.683e-19 Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLC RHG+TLA GE+ L+Q + +D QK L+ +VPAIEKARLYRGKGGEIMR++VSRFI CIS+ ++L Sbjct: 490 SSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKALSGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISL 564
BLAST of GR406667 vs. TrEMBL
Match: Q337D2_ORYSJ (Tubulin folding cofactor D, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g36490 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.683e-19 Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLC RHG+TLA GE+ L+Q + +D QK L+ +VPAIEKARLYRGKGGEIMR++VSRFI CIS+ ++L Sbjct: 520 SSDLCTRHGATLAAGEIALKLYQLGFTFTTDMQKALSGIVPAIEKARLYRGKGGEIMRSAVSRFIACISMSGISL 594
BLAST of GR406667 vs. TAIR peptide
Match: AT3G60740.1 (| Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254) HSP 1 Score: 116.316 bits (290), Expect = 3.856e-27 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = -3 Query: 3 SFDLCMRHGSTLATGELVFALHQCNYVLPSDNQKTLASVVPAIEKARLYRGKGGEIMRASVSRFIECISIFKVAL 227 S DLCMRHG+TLA GE+V ALHQC YVL +D+QK +A +VP+IEKARLYRGKGGEIMR +VSRFIECIS+ V L Sbjct: 649 STDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIVPSIEKARLYRGKGGEIMRLAVSRFIECISLSHVTL 723 The following BLAST results are available for this feature:
BLAST of GR406667 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR406667 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR406667 ID=GR406667; Name=GR406667; organism=Cicer arietinum; type=EST; length=229bpback to top |