GR397060

EST Overview


Name	GR397060
Unique Name	GR397060
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	646

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR397060 vs. TrEMBL
Match: C6SVN0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.540e-21
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGWGLSDFS G+TKSFKGQ+IGLIYATQYLR PLILLNSVFIIVKLVSG
Sbjct:   22 EDRFLTPRGWGLSDFSAGQTKSFKGQLIGLIYATQYLRFPLILLNSVFIIVKLVSG 77

[Close]

BLAST of GR397060 vs. TrEMBL
Match: D7TMI4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_19.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016389001 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.757e-20
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 2

Query:  119 LSVIIREMGXXXXXXXXXXXXXXXXXXXEDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            ++ +I++MG                   EDRFL PRGW  S+FSGGRTKSFKGQ+IGLIYATQYLRVPLILLNS+ II+KLVSG
Sbjct:    5 ITKLIKDMGLWTLLEGCLLIANALAILNEDRFLAPRGWSFSEFSGGRTKSFKGQLIGLIYATQYLRVPLILLNSICIIIKLVSG 88

[Close]

BLAST of GR397060 vs. TrEMBL
Match: B9SWN6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0498270 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.652e-19
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW  S+FSGGRTKSFKGQ+IGLIYATQY+RVPL++LN++ I+VKLVSG
Sbjct:   22 EDRFLAPRGWSFSEFSGGRTKSFKGQLIGLIYATQYMRVPLMILNAICIVVKLVSG 77

[Close]

BLAST of GR397060 vs. TrEMBL
Match: A9P9V2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_567326 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.392e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW  S+FS GRTKS KGQ+IGLIYATQY+RVPLI+LNS+ I VKLVSG
Sbjct:   22 EDRFLAPRGWSFSEFSVGRTKSLKGQLIGLIYATQYMRVPLIILNSICIFVKLVSG 77

[Close]

BLAST of GR397060 vs. TrEMBL
Match: B9HHJ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_563968 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.818e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW  S+FS GRTKS KGQ+IGLIYATQY+RVPL++LNS+ I VKLVSG
Sbjct:   22 EDRFLAPRGWSFSEFSVGRTKSLKGQLIGLIYATQYMRVPLVILNSICIFVKLVSG 77

[Close]

BLAST of GR397060 vs. TrEMBL
Match: D7UBP0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_123.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013495001 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.429e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW   +FSGGR KS KGQ++GLIYA QY+RVPLILLN + IIVKLV+G
Sbjct:   22 EDRFLSPRGWSFDEFSGGRRKSLKGQLVGLIYAVQYMRVPLILLNIITIIVKLVTG 77

[Close]

BLAST of GR397060 vs. TrEMBL
Match: B6TGT9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.223e-15
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSG-GRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW +S+ SG G+TKSFKGQI+GLIYATQ+LR+PLI LN + I+VKLVSG
Sbjct:   22 EDRFLGPRGWSMSEVSGNGQTKSFKGQIVGLIYATQFLRMPLIALNVLIIVVKLVSG 78

[Close]

BLAST of GR397060 vs. TrEMBL
Match: B6UBU4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.951e-15
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSG-GRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW +S+ SG G+TKS KGQI+GLIYATQ+LR+PLI LN + I+VKLVSG
Sbjct:   22 EDRFLTPRGWSMSEVSGNGQTKSLKGQIVGLIYATQFLRMPLIALNVLIIVVKLVSG 78

[Close]

BLAST of GR397060 vs. TrEMBL
Match: B6U4T4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.951e-15
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSG-GRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW +S+ SG G+TKS KGQI+GLIYATQ+LR+PLI LN + I+VKLVSG
Sbjct:   22 EDRFLAPRGWSMSEVSGNGQTKSLKGQIVGLIYATQFLRMPLIALNVLIIVVKLVSG 78

[Close]

BLAST of GR397060 vs. TrEMBL
Match: C7J731_ORYSJ (Os09g0326850 protein OS=Oryza sativa subsp. japonica GN=Os09g0326850 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-14
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDFSG-GRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL PRGW +S+ SG G+TKS KGQI+GLIYATQ+LR+PLI LN + I+VKLVSG
Sbjct:   58 EDRFLGPRGWSMSEVSGNGQTKSLKGQIVGLIYATQFLRMPLIALNVLIIVVKLVSG 114

[Close]

BLAST of GR397060 vs. TAIR peptide
Match: AT3G54085.2 (| Symbols: | Yos1-like protein | chr3:20026780-20027016 REVERSE LENGTH=78)

HSP 1 Score: 69.707 bits (169), Expect = 1.521e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDF-SGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFLVPRGW L +     R  S KGQIIGLI+A QY+R+PL+L+N+  I++KL+SG
Sbjct:   22 EDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMRLPLMLINTAVIVLKLISG 78

[Close]

BLAST of GR397060 vs. TAIR peptide
Match: AT3G54085.1 (| Symbols: | Yos1-like protein | chr3:20026780-20027016 REVERSE LENGTH=78)

HSP 1 Score: 69.707 bits (169), Expect = 1.521e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDF-SGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFLVPRGW L +     R  S KGQIIGLI+A QY+R+PL+L+N+  I++KL+SG
Sbjct:   22 EDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMRLPLMLINTAVIVLKLISG 78

[Close]

BLAST of GR397060 vs. TAIR peptide
Match: AT2G37975.1 (| Symbols: | Yos1-like protein | chr2:15891900-15892136 REVERSE LENGTH=78)

HSP 1 Score: 65.4698 bits (158), Expect = 2.869e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2

Query:  203 EDRFLVPRGWGLSDF-SGGRTKSFKGQIIGLIYATQYLRVPLILLNSVFIIVKLVSG 370
            EDRFL P+GW L++    G+  S KGQIIGLI+A  Y+R+PL+L N + I+ KL SG
Sbjct:   22 EDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMRLPLMLFNLIVIVFKLFSG 78

The following BLAST results are available for this feature:

BLAST of GR397060 vs. TrEMBL
BLAST of GR397060 vs. TAIR peptide

BLAST of GR397060 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SVN0_SOYBN	3.540e-21	91.07	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7TMI4_VITVI	1.757e-20	60.71	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SWN6_RICCO	5.652e-19	78.57	Putative uncharacterized protein OS=Ricinus commun...	[more]
A9P9V2_POPTR	1.392e-17	78.57	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9HHJ9_POPTR	1.818e-17	76.79	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7UBP0_VITVI	3.429e-16	73.21	Whole genome shotgun sequence of line PN40024, sca...	[more]
B6TGT9_MAIZE	2.223e-15	73.68	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B6UBU4_MAIZE	4.951e-15	71.93	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B6U4T4_MAIZE	4.951e-15	71.93	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
C7J731_ORYSJ	1.103e-14	71.93	Os09g0326850 protein OS=Oryza sativa subsp. japoni...	[more]

BLAST of GR397060 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G54085.2	1.521e-12	59.65	\| Symbols: \| Yos1-like protein \| chr3:20026780-20...	[more]
AT3G54085.1	1.521e-12	59.65	\| Symbols: \| Yos1-like protein \| chr3:20026780-20...	[more]
AT2G37975.1	2.869e-11	54.39	\| Symbols: \| Yos1-like protein \| chr2:15891900-15...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 15..27 score
None	No IPR available	SEG	seg	seg	coord: 10..22 score: NAcoord: 41..59 score
None	No IPR available	SEG	seg	seg	coord: 27..43 score: NAcoord: 69..87 score
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 39..115 score: 3.6
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 41..115 score: 2

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR397060 ID=GR397060; Name=GR397060; organism=Cicer arietinum; type=EST; length=646bp
GGATCTTAGTTCTGCTCTAGATTAGCATTGCCATCGGTCGCGTTCCCTGA
TTCCCCGTCCACGTCCACGTCGACACCGGCATCGGCACCGGAAAACTATC
AACCGTTCCGTTCTTGTCCTCTCCGTAATAATCAGGGAAATGGGTTTGTG
GACATTACTTGAGGGTTTCCTGCTTCTTGCAAATGCTCTAGCTATACTAA
ACGAGGACCGCTTTCTTGTGCCTAGAGGATGGGGCTTATCAGATTTTTCC
GGAGGCAGGACAAAATCTTTCAAAGGCCAGATTATAGGTCTCATTTATGC
AACTCAGTACCTAAGAGTTCCTCTCATACTTCTTAATTCCGTCTTCATTA
TTGTAAAGTTGGTTTCTGGGTGATGCTTGGCAAGGATCATGCATGTGCGG
TTTAAGGAATTCACAAGATGTTTAGCACTATTCCAGTCTCTTCCTGGTTG
CAGGTGCTGAAGTTTTACATCCCATGATTTCAAGTTGTTTTTAGATAGGA
ATATTTGAGAAATTCTATTGTAATTGTAAGAATATACATCAAGAACATCT
CTTTTGAGATCTTGATCCATTGATAATATTAGGCACAAAATTATGCTTGC
TACCACGACATATGTAGTCAGAAATGGAGATTATTATTGCGACTGT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR013880	Yos1

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