GT620258

EST Overview
NameGT620258
Unique NameGT620258
TypeEST
OrganismLens culinaris (lentil)
Sequence length288
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT620258 vs. TrEMBL
Match: B9RNG2_RICCO (Heat shock protein binding protein, putative OS=Ricinus communis GN=RCOM_1347440 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.340e-12
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 ENDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            EN  +     S T N +VFQGVFCRDLA VGNLL+Q GFNRP+PVKYEAL C
Sbjct:  536 ENKPAAVKTPSGTTNQSVFQGVFCRDLATVGNLLSQAGFNRPVPVKYEALRC 587          
BLAST of GT620258 vs. TrEMBL
Match: D7U2G8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00028103001 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   37 TVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            T   +VFQGVFCRDLAVVGNLL+Q GFNR IPVKYEALSC
Sbjct:  519 TSTASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 558          
BLAST of GT620258 vs. TrEMBL
Match: B9I9K7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_774720 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 NDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            ND   S  S+ +    VFQGVFCRDLA VGNLL+Q GF+RPIP+KYEALSC
Sbjct:  484 NDNKVSSASAGSTAAPVFQGVFCRDLAAVGNLLSQGGFSRPIPMKYEALSC 534          
BLAST of GT620258 vs. TrEMBL
Match: A5C448_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036192 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   37 TVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            T   +VFQGVFCRDLAVVGNLL+Q GFNR IPVKYEALSC
Sbjct:  503 TSTASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 542          
BLAST of GT620258 vs. TrEMBL
Match: B9GSH4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552515 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.110e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 NDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N+   +  SS +   +VFQGVFCRDLA VGNLL+Q GFNRP+ VK+EALSC
Sbjct:  519 NENKVASASSGSNTASVFQGVFCRDLAAVGNLLSQAGFNRPLAVKFEALSC 569          
BLAST of GT620258 vs. TrEMBL
Match: O22266_ARATH (Putative uncharacterized protein At2g47440 OS=Arabidopsis thaliana GN=At2g47440 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.062e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  488 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 526          
BLAST of GT620258 vs. TrEMBL
Match: D7LGN0_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483921 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.062e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  487 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 525          
BLAST of GT620258 vs. TrEMBL
Match: D7LT73_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486757 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.707e-8
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N   FQGVFCRDLA VG+LL++ GFN+PIP+KY+A+SC
Sbjct:  514 NSNAFQGVFCRDLAAVGSLLSRTGFNQPIPMKYDAISC 551          
BLAST of GT620258 vs. TrEMBL
Match: D7M452_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490370 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.229e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   28 SSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            +S   N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  502 NSTNNNTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 544          
BLAST of GT620258 vs. TrEMBL
Match: Q84VX5_ARATH (At4g02100 OS=Arabidopsis thaliana GN=At4g02100 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.911e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  509 NTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 546          
BLAST of GT620258 vs. TAIR peptide
Match: AT2G47440.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:19469912-19471660 FORWARD LENGTH=526)

HSP 1 Score: 67.781 bits (164), Expect = 1.597e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  488 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 526          
BLAST of GT620258 vs. TAIR peptide
Match: AT4G02100.1 (| Symbols: | Heat shock protein DnaJ with tetratricopeptide repeat | chr4:930228-932049 FORWARD LENGTH=546)

HSP 1 Score: 61.6178 bits (148), Expect = 1.144e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  509 NTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 546          
BLAST of GT620258 vs. TAIR peptide
Match: AT3G62570.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:23142616-23144563 FORWARD LENGTH=552)

HSP 1 Score: 61.2326 bits (147), Expect = 1.495e-10
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N   +QGVFCRDLA VG+LL++ GFN+PIP+KY+A+SC
Sbjct:  515 NSNAYQGVFCRDLAAVGSLLSRTGFNQPIPMKYDAISC 552          
The following BLAST results are available for this feature:
BLAST of GT620258 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RNG2_RICCO4.340e-1267.31Heat shock protein binding protein, putative OS=Ri... [more]
D7U2G8_VITVI6.267e-1182.50Whole genome shotgun sequence of line PN40024, sca... [more]
B9I9K7_POPTR6.267e-1166.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5C448_VITVI6.267e-1182.50Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GSH4_POPTR3.110e-1062.75Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
O22266_ARATH4.062e-1076.92Putative uncharacterized protein At2g47440 OS=Arab... [more]
D7LGN0_ARALY4.062e-1076.92DNAJ heat shock N-terminal domain-containing prote... [more]
D7LT73_ARALY1.707e-868.42DNAJ heat shock N-terminal domain-containing prote... [more]
D7M452_ARALY2.229e-865.12DNAJ heat shock N-terminal domain-containing prote... [more]
Q84VX5_ARATH2.911e-871.05At4g02100 OS=Arabidopsis thaliana GN=At4g02100 PE=... [more]
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BLAST of GT620258 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G47440.11.597e-1276.92| Symbols: | Tetratricopeptide repeat (TPR)-like ... [more]
AT4G02100.11.144e-1071.05| Symbols: | Heat shock protein DnaJ with tetratr... [more]
AT3G62570.11.495e-1065.79| Symbols: | Tetratricopeptide repeat (TPR)-like ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 14..43
score: 7
NoneNo IPR availablePANTHERPTHR22904:SF7SGT-1-RELATEDcoord: 14..43
score: 7

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620258 ID=GT620258; Name=GT620258; organism=Lens culinaris; type=EST; length=288bp
GAAAATGATCAGTCTCAGTCACTGATATCTTCCTGTACTGTGAATCCGGC
GGTGTTTCAAGGTGTGTTTTGCCGCGATCTTGCGGTGGTCGGAAACTTGT
TGACGCAGGTGGGATTTAATCGTCCGATACCGGTGAAGTACGAAGCATTG
AGCTGCTAAGAAAGTTTTGATGAGAAAAATTGGTGGGAGGGGCTGTTGGA
GATGTTACCGGCAGAGGGAATCTCTGGTTCATATTCACTTTATGATTGTA
CAAACAAAATGCAAAGGGTAAAAAACTTTAGACTGCCG
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