GR398720
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR398720 vs. TrEMBL
Match: B9IMA1_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_737941 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.437e-31 Identity = 83/157 (52.87%), Postives = 102/157 (64.97%), Query Frame = 3 Query: 3 DLHQV-NGKGSAMSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEA-DSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 D +QV + K S +S FQ+ SP ++ S S IE DP+ T D M EAPS SS VMD RA EG EA DSK PRN D IK+PGLRPSMS+ DL I E++ SGN + D ECQ +LE+IAQ+LL+D Q +SDEK +M+RVNSLCC Sbjct: 303 DFNQVESAKVSVVSGFQDLASPSAAQSSSLEIEKGDPTASTSDPMSREAPSPSS-VMDSRAIEGRGICEAVDSKAPRNWDQIKVPGLRPSMSMTDLMNHIGNCISEQMTSGNQPFSADGSECQDILEDIAQYLLSDTQQTTSSDEKGIMARVNSLCC 458
BLAST of GR398720 vs. TrEMBL
Match: B9HBE8_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_416401 PE=4 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.537e-28 Identity = 78/157 (49.68%), Postives = 101/157 (64.33%), Query Frame = 3 Query: 3 DLHQV-NGKGSAMSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEA-DSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 D +QV + K S +S F + SP ++ S S I+ DPS T D M EAPS SS VMD RA EG+ EA DS+ PRN D IK+PGLR SMS+ DL I E++ SGN + ++ EC+ +LE+IAQ LL+D Q +SDEK +M+RVNSLCC Sbjct: 274 DFNQVESAKVSVVSGFHHLASPSAAQSSSLEIDKEDPSASTSDHMSREAPSPSS-VMDTRAIEGSGICEAVDSRAPRNWDQIKVPGLRHSMSMTDLMNHIGNCISEQMTSGNQLFSANESECRDILEDIAQCLLSDTQQTTSSDEKRIMARVNSLCC 429
BLAST of GR398720 vs. TrEMBL
Match: B9SQX8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1405850 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.644e-27 Identity = 80/148 (54.05%), Postives = 99/148 (66.89%), Query Frame = 3 Query: 30 SAMSRFQN-TGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEA-DSKDPRNLDHIKLPGLRPSMSVNDLFGQIE-----EIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 S+ S FQ+ SP ++ S S +E D +G T + M EAPS SS VMD RA EG N EA DSK RN D IK+PGL PSMS++DL IE +I SGN SL+ D E Q +LE+IAQ+LL+DNQ+ +SDEK LM+RVNSLCC Sbjct: 314 SSASGFQDLVASPSAAHSSS--LEIGDHAGTTSEQMSREAPSPSS-VMDTRAIEGNGNCEAVDSKGLRNWDQIKVPGLHPSMSMSDLMNHIENCISEQITSGNPSLSADGSEGQNILEDIAQYLLSDNQLTTSSDEKRLMARVNSLCC 458
BLAST of GR398720 vs. TrEMBL
Match: B9GLP3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814792 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.059e-18 Identity = 65/166 (39.16%), Postives = 94/166 (56.63%), Query Frame = 3 Query: 3 DLHQVNGKG--------SAMSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSE--VMDYRATEGTL-NSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 DLH+ +GKG +A+ Q G P LS S +++ G+T S + + TSS VM+ A E T N + + P N D IK+PGL PS+S++DL I E++ SGNS L+ ++ +L+EI Q+LL D+QV SDE+S++S VNSLCC Sbjct: 258 DLHE-SGKGLDSEVEDRTAVFALQEAGPPSGVLSSSL---NNECQGLTCQSPENISQQTSSTTLVMETHAFEETRSNRTGEQQLPSNCDQIKVPGLHPSISMSDLVNHIGHCISEQMTSGNSILSGGDIKSSDILDEITQYLLGDSQVMSASDEQSVVSTVNSLCC 419
BLAST of GR398720 vs. TrEMBL
Match: B9RGP4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442490 PE=4 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.909e-16 Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 3 Query: 75 LSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 LS S + EH G T +S+ E PS SS+ R +L ++ P + + IK+PGL SMS++D I E++ +GN ++ DD+ + +LEEI Q+LL+D Q+ SDE+SLMSRVNSLCC Sbjct: 297 LSSSLSDEHQFFIGRTPESISRETPSPSSDAYGIREFR-SLRADRQMM-PSHWNQIKVPGLHQSMSMSDFVNHIGQCISEQMTTGNPTILDDETKYNDILEEITQYLLSDYQLTSASDEQSLMSRVNSLCC 425
BLAST of GR398720 vs. TrEMBL
Match: B9GVV4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830969 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.962e-16 Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 48 QNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLCC 452 + G P L S E T +++ E STS + + E N + K P N D IK+PGL SMS++DL I E++ SGNS L ++ +L+EI Q+LL D+QV SDE+SLM+RVNSLCC Sbjct: 264 REAGQPSGVLLSSLNNECQGFLCQTPENISHETSSTSFGMETHVFEEIRSNRTGEQKLPSNWDQIKVPGLHSSMSMSDLVNHIGHCISEQMTSGNSILCGGDIKSSDILDEITQYLLGDSQVTSASDEQSLMTRVNSLCC 403
BLAST of GR398720 vs. TrEMBL
Match: D7U1G3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_37.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023689001 PE=4 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.035e-13 Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 24 KGSAMSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADS-KDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSL 326 +GS +S FQ+ SP ++ S S IE DP G+ +++ E+PS SS VMD RA EG+ N E D K RN + +K+PGL PS+S++DL I E++ SGN +L Sbjct: 305 QGSTISGFQDVASPTAAQSSSLKIEPRDPVGLASENLSRESPSPSS-VMDTRAMEGSRNCETDDLKRQRNWEQLKVPGLHPSISMSDLMNHIENRISEQMTSGNPAL 410
BLAST of GR398720 vs. TrEMBL
Match: C5Z5U8_SORBI (Putative uncharacterized protein Sb10g005890 OS=Sorghum bicolor GN=Sb10g005890 PE=4 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.035e-13 Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 3 Query: 33 AMSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKD-PRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQ--VAITSDEKSLMSRVNSLCC 452 A+ + + SP + S S E++D G+ + +P +A T + ++ +N A + P +K+PGLRPSMSV+DL + E+I SGN +L ++++ ++ LE IAQ+LL D Q SDE+SLM+RV+SLCC Sbjct: 243 ALPGYSGSVSPCAGSSISAKNENNDSIGMPAEYLP-QAVGTGVGAVGVQSVGRNVNGAAPEFNIPHWWSQLKVPGLRPSMSVDDLVSHLGNCISEQITSGNPALANNEVPTKETLEGIAQYLLGDTQGPPVSASDERSLMARVDSLCC 389
BLAST of GR398720 vs. TrEMBL
Match: Q5SMV3_ORYSJ (Putative uncharacterized protein P0470C02.5-1 OS=Oryza sativa subsp. japonica GN=P0470C02.5-1 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.351e-13 Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 36 MSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQ--VAITSDEKSLMSRVNSLCC 452 +S F + SP + S S IE +D S T ++ + ++ + +N + P +K+PGLRPSMSV+DL + E+I S N +L +++ ++ LEEIAQ+LL D Q A TSDE+SLM+RV+SLCC Sbjct: 71 LSGFSGSLSPCAGSSMSAKIEVND-SIATQAGFLAQPGNPGPSAVNVQGVSRNVNGAPELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIAQYLLGDAQGPPASTSDERSLMARVDSLCC 215
BLAST of GR398720 vs. TrEMBL
Match: Q0DDZ8_ORYSJ (Os06g0186600 protein OS=Oryza sativa subsp. japonica GN=Os06g0186600 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.351e-13 Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 36 MSRFQNTGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQI-----EEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQ--VAITSDEKSLMSRVNSLCC 452 +S F + SP + S S IE +D S T ++ + ++ + +N + P +K+PGLRPSMSV+DL + E+I S N +L +++ ++ LEEIAQ+LL D Q A TSDE+SLM+RV+SLCC Sbjct: 244 LSGFSGSLSPCAGSSMSAKIEVND-SIATQAGFLAQPGNPGPSAVNVQGVSRNVNGAPELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIAQYLLGDAQGPPASTSDERSLMARVDSLCC 388
BLAST of GR398720 vs. TAIR peptide
Match: AT2G24100.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466) HSP 1 Score: 67.3958 bits (163), Expect = 3.803e-12 Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 3 Query: 30 SAMSRFQN--TGSPHSSLSPSFTIEHSDPSGITLDSMPSEAPSTSSEVMDYRATEGTLNSEADSKDPRNLDHIKLPGLRPSMSVNDLFGQIEEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSLC 449 S +S F++ H+ SP S+ ++ D++ + S VMD RA EG + DS++ IK+PGL S+S+ND + L+D E Q EE+ Q LL+DN SDEKS+MS+VNS C Sbjct: 262 SRLSIFEDPSVSGSHNIASPVGAQSSSEHVSLSHDAL------SPSSVMDARAIEG-VGGSIDSRNTNGWSQIKMPGLHQSISMNDFL----------TFLSDQACENNQEFEEMKQLLLSDNTQTDPSDEKSVMSKVNSFC 386
BLAST of GR398720 vs. TAIR peptide
Match: AT4G30780.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr4:14990523-14992855 FORWARD LENGTH=589) HSP 1 Score: 53.9138 bits (128), Expect = 4.351e-8 Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 3 Query: 207 ADSKDPRNLDHIKLPGLRPSMSVNDLFGQIEEIISGNSSLTDDKLECQQMLEEIAQHLLNDNQVAITSDEKSLMSRVNSL 446 +DS++ + D IK+PGL SMSV+D G + + G+ E + E + Q LL+DN DEKSLM RVNSL Sbjct: 423 SDSRNITDSDQIKVPGLHQSMSVSDFVGLLSDSAGGSHP------EHMEKFEIMKQQLLSDNIQFEAPDEKSLMPRVNSL 496 The following BLAST results are available for this feature:
BLAST of GR398720 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR398720 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR398720 ID=GR398720; Name=GR398720; organism=Cicer arietinum; type=EST; length=452bpback to top |