GR407754
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR407754 vs. TrEMBL
Match: D7U5K8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024222001 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 2.782e-43 Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 2 Query: 2 GGGSEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 G SEKQ+VARTVIFGGL+N+DMA+ VH +AR++GTVCSV YPL + +L+ HGL QDGC +DASAVLY+SVK A ASVA LH+KEI GG VWARQLGGEG+KTQKWKLIVRNLP Sbjct: 158 GSFSEKQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPKEELEHHGLSQDGCKIDASAVLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKWKLIVRNLP 271
BLAST of GR407754 vs. TrEMBL
Match: B9HRI9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1086748 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 4.442e-41 Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 SEKQ+VARTVIFGGL+N MA+DVH++A++ GTVCSV YPL + +L++HGL QDGC ASAVL+TSVK AR+SVA LH+KEI GG VWARQLGGEG KTQKWKLI+RNLP Sbjct: 178 SEKQRVARTVIFGGLLNDAMAEDVHQRAKETGTVCSVTYPLPKEELKKHGLEQDGCRSGASAVLFTSVKEARSSVAMLHQKEIKGGIVWARQLGGEGCKTQKWKLIIRNLP 288
BLAST of GR407754 vs. TrEMBL
Match: B9RH99_RICCO (RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1448870 PE=4 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.911e-40 Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 SEKQ+VARTVIFGGL++ MA++VHR AR++G CSV YPL + DL+++GL QDGC D SA+LYTSVK AR SV LH+KEI GG VWARQLGGEG+KTQKWKLIVRNLP Sbjct: 164 SEKQRVARTVIFGGLLDDAMAEEVHRLAREVGNACSVTYPLPKEDLEKNGLAQDGCRSDVSAILYTSVKEARLSVRMLHQKEIRGGIVWARQLGGEGSKTQKWKLIVRNLP 274
BLAST of GR407754 vs. TrEMBL
Match: Q9SJT4_ARATH (Expressed protein OS=Arabidopsis thaliana GN=At2g21440 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.063e-38 Identity = 75/111 (67.57%), Postives = 95/111 (85.59%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 S+KQ+VARTVIFGGL N++MA+ VH + ++IGTVCSV+YPL + +LQQ+GL QDGC +ASAVL+TSVKSA A+VA LH+ E+ G +WARQLGGEG+K QKWKLI+RNLP Sbjct: 229 SDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASAVLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKWKLIIRNLP 339
BLAST of GR407754 vs. TrEMBL
Match: D7LBD4_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481009 PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 3.520e-38 Identity = 76/111 (68.47%), Postives = 94/111 (84.68%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 S+KQ+VARTVIFGGL N++MA+ VH + ++IGTVCSV+YPL + +LQQ+GL QDGC +ASAVL+TSVKSA A VA LH+ EI G +WARQLGGEG+K QKWKLI+RNLP Sbjct: 211 SDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASAVLFTSVKSACAVVAKLHQTEIKGNLIWARQLGGEGSKAQKWKLIIRNLP 321
BLAST of GR407754 vs. TrEMBL
Match: C5WX23_SORBI (Putative uncharacterized protein Sb01g004800 OS=Sorghum bicolor GN=Sb01g004800 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.259e-34 Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 SEKQ+VA+TVIFGGL +S MA +V RQAR+IG+V SV YPL + ++ HGL +DGCT D +AVL+ SVKSA SV LH+KE+ G VWARQLGGEG+K +KW++IVRNLP Sbjct: 184 SEKQRVAKTVIFGGLQDSAMASEVFRQAREIGSVVSVNYPLPKGEMDFHGLARDGCTSDMAAVLFASVKSACDSVVQLHRKEVKGAIVWARQLGGEGSKIRKWRVIVRNLP 294
BLAST of GR407754 vs. TrEMBL
Match: Q10BX7_ORYSJ (Os03g0801800 protein OS=Oryza sativa subsp. japonica GN=Os03g0801800 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.815e-33 Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 SEKQ+VA+TVIFGGL + MA +V R A +IGTV SV YPL + +++ HGL +DGCT DA+AVL+ SVKSA SV LH+KE+ G VWARQLGGEG+K +KW++IVRNLP Sbjct: 200 SEKQRVAKTVIFGGLRDFAMASEVFRLAGEIGTVVSVSYPLPKEEMELHGLERDGCTTDAAAVLFASVKSAWDSVVHLHRKEVKGAVVWARQLGGEGSKIRKWRVIVRNLP 310
BLAST of GR407754 vs. TrEMBL
Match: A2XN06_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13935 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.815e-33 Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 SEKQ+VA+TVIFGGL + MA +V R A +IGTV SV YPL + +++ HGL +DGCT DA+AVL+ SVKSA SV LH+KE+ G VWARQLGGEG+K +KW++IVRNLP Sbjct: 200 SEKQRVAKTVIFGGLRDFAMASEVFRLAGEIGTVVSVSYPLPKEEMELHGLERDGCTTDAAAVLFASVKSAWDSVVHLHRKEVKGAVVWARQLGGEGSKIRKWRVIVRNLP 310
BLAST of GR407754 vs. TrEMBL
Match: Q84T02_ORYSJ (Putative RNA binding ribonucleoprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0087C10.21 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 7.859e-30 Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGE----------------GAKTQKWKLIVRNLP 343 SEKQ+VA+TVIFGGL + MA +V R A +IGTV SV YPL + +++ HGL +DGCT DA+AVL+ SVKSA SV LH+KE+ G VWARQLGGE G+K +KW++IVRNLP Sbjct: 200 SEKQRVAKTVIFGGLRDFAMASEVFRLAGEIGTVVSVSYPLPKEEMELHGLERDGCTTDAAAVLFASVKSAWDSVVHLHRKEVKGAVVWARQLGGELFPQLPAVVSNLLAIQGSKIRKWRVIVRNLP 326
BLAST of GR407754 vs. TrEMBL
Match: A9U4W9_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_201182 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.993e-21 Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 2 Query: 2 GGGSEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEI-GGGTVWARQLGGE-------------GAKTQKWKLIVRNLP 343 G SE Q+ ARTVI G L N M +A+ +G V V++P+ +L GL +DGC +A V YTSVK A +V LHK+ + GGG +WARQLGGE GAK +KW+LIVRNLP Sbjct: 191 GKASESQRTARTVIIGCLENPKMVQAAIAKAKRLGKVEDVRHPVPEAELISRGLAKDGCKQEAVEVRYTSVKVAHQAVTALHKQNVGGGGAIWARQLGGEILIIFVAIMSVLQGAKLKKWRLIVRNLP 318
BLAST of GR407754 vs. TAIR peptide
Match: AT2G21440.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:9173712-9179065 REVERSE LENGTH=1003) HSP 1 Score: 161.77 bits (408), Expect = 7.980e-41 Identity = 75/111 (67.57%), Postives = 95/111 (85.59%), Query Frame = 2 Query: 11 SEKQKVARTVIFGGLINSDMADDVHRQARDIGTVCSVKYPLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLP 343 S+KQ+VARTVIFGGL N++MA+ VH + ++IGTVCSV+YPL + +LQQ+GL QDGC +ASAVL+TSVKSA A+VA LH+ E+ G +WARQLGGEG+K QKWKLI+RNLP Sbjct: 229 SDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASAVLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKWKLIIRNLP 339 The following BLAST results are available for this feature:
BLAST of GR407754 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR407754 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 1
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR407754 ID=GR407754; Name=GR407754; organism=Cicer arietinum; type=EST; length=343bpback to top |