GR914292

EST Overview


Name	GR914292
Unique Name	GR914292
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	368

Libraries


Library Name	Type
LIBEST_024968 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR914292 vs. SwissProt
Match: Y2162_ARATH (Uncharacterized protein At2g41620 OS=Arabidopsis thaliana GN=At2g41620 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.453e-46
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS +RD   GSSS+VL+DGL PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLS+QLLPA+++LSKE GD GYNIDA H++I L DH VLSEG+GT
Sbjct:  446 TIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAISLVDHSVLSEGSGT 553

[Close]

BLAST of GR914292 vs. TrEMBL
Match: Q2HVW5_MEDTR (Nucleoporin interacting component; Protein prenyltransferase OS=Medicago truncatula GN=MtrDRAFT_AC148340g11v2 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.020e-53
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLSAVRDCP+GSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPY+LLLSIQLLPAVLYLSKE GDEGYNIDAAHLSI+LADHGVLSEG GT
Sbjct:  444 TIEDFLWFKLSAVRDCPSGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLYLSKEAGDEGYNIDAAHLSIVLADHGVLSEGIGT 551

[Close]

BLAST of GR914292 vs. TrEMBL
Match: B7FN93_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.020e-53
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLSAVRDCP+GSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPY+LLLSIQLLPAVLYLSKE GDEGYNIDAAHLSI+LADHGVLSEG GT
Sbjct:  195 TIEDFLWFKLSAVRDCPSGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYILLLSIQLLPAVLYLSKEAGDEGYNIDAAHLSIVLADHGVLSEGIGT 302

[Close]

BLAST of GR914292 vs. TrEMBL
Match: D7THT1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033240001 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.010e-50
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAG 347
            TIEDFLWFKLSAVRDCP GSSS+VL++GL+PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKE G EGYN+DA H+SI+LADHGVLSEGAG
Sbjct:  448 TIEDFLWFKLSAVRDCPGGSSSVVLNEGLVPYSLDDLQNYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKEMGVEGYNVDATHISIVLADHGVLSEGAG 554

[Close]

BLAST of GR914292 vs. TrEMBL
Match: A5BBM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010199 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.010e-50
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAG 347
            TIEDFLWFKLSAVRDCP GSSS+VL++GL+PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKE G EGYN+DA H+SI+LADHGVLSEGAG
Sbjct:  481 TIEDFLWFKLSAVRDCPGGSSSVVLNEGLVPYSLDDLQNYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKEMGVEGYNVDATHISIVLADHGVLSEGAG 587

[Close]

BLAST of GR914292 vs. TrEMBL
Match: D7LVR7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907197 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.974e-45
Identity = 85/108 (78.70%), Postives = 97/108 (89.81%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS VRD   GSSS++L+DGL+PYSLDDLQ YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPA++++S E GDEGYNIDA H++I L DH +LSEG+GT
Sbjct:  447 TIEDFLWFKLSCVRDVAGGSSSVILNDGLVPYSLDDLQVYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAIMHMSNEAGDEGYNIDAVHVAISLVDHSILSEGSGT 554

[Close]

BLAST of GR914292 vs. TrEMBL
Match: B9I510_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823177 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.974e-45
Identity = 84/107 (78.50%), Postives = 99/107 (92.52%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAG 347
            TIEDFLWFKLSAVRD P G+S++VL++ L+PYSL+DLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLS+Q+LPA+LYLS+E  DEGY+IDA H+SI LADHGVL+EG G
Sbjct:  448 TIEDFLWFKLSAVRDYPAGTSTLVLNESLVPYSLEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQMLPAILYLSREAADEGYDIDAVHISIALADHGVLTEGGG 554

[Close]

BLAST of GR914292 vs. TrEMBL
Match: Q9M2L2_ARATH (Putative uncharacterized protein F28O9.200 OS=Arabidopsis thaliana GN=F28O9.200 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.072e-45
Identity = 84/108 (77.78%), Postives = 98/108 (90.74%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS VRD   GSSS++++DGL+PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPA++++S E GDEGYNIDA H++I L DH +LSEG+GT
Sbjct:  447 TIEDFLWFKLSCVRDVAGGSSSMIVNDGLVPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAIMHMSNEAGDEGYNIDAVHVAISLVDHSILSEGSGT 554

[Close]

BLAST of GR914292 vs. TrEMBL
Match: D7LH88_ARALY (Nucleoporin interacting component family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483241 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.294e-44
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS +RD    SSS+VL+DGL PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPA+++LSKE GD GYNIDA H++I L DH VLSEG+GT
Sbjct:  440 TIEDFLWFKLSCIRDVTGVSSSLVLNDGLAPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAIMHLSKEAGDGGYNIDAIHIAISLVDHSVLSEGSGT 547

[Close]

BLAST of GR914292 vs. TrEMBL
Match: B9N339_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_580574 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.632e-43
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAG 347
            TIEDFLWFKLSAV++   G+SS VL++ L+PYSL+DLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLS+Q+LPA+LYLSKE  DEGYNI+A H+SI LADHGVL+EGAG
Sbjct:  448 TIEDFLWFKLSAVQEYHGGTSSQVLNESLVPYSLEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQMLPAILYLSKEAADEGYNINAVHVSIALADHGVLTEGAG 554

[Close]

BLAST of GR914292 vs. TrEMBL
Match: Q10LH9_ORYSJ (Nucleoporin interacting component, putative, expressed OS=Oryza sativa subsp. japonica GN=Os03g0349000 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.748e-43
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLSA+R+  + SSS V ++GL+PY+L+DLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPA+LYLSKE G+EGY++DA H+SI L+DHGVL +G G+
Sbjct:  456 TIEDFLWFKLSALREYTSASSSNVSNEGLVPYTLEDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAILYLSKEVGEEGYHVDAVHISIALSDHGVLPDGVGS 563

[Close]

BLAST of GR914292 vs. TAIR peptide
Match: AT2G41620.1 (| Symbols: | Nucleoporin interacting component (Nup93/Nic96-like) family protein | chr2:17350419-17354997 REVERSE LENGTH=861)

HSP 1 Score: 184.496 bits (467), Expect = 1.282e-47
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS +RD   GSSS+VL+DGL PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLS+QLLPA+++LSKE GD GYNIDA H++I L DH VLSEG+GT
Sbjct:  446 TIEDFLWFKLSCIRDVTGGSSSVVLNDGLAPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAISLVDHSVLSEGSGT 553

[Close]

BLAST of GR914292 vs. TAIR peptide
Match: AT3G57350.1 (| Symbols: | Nucleoporin interacting component (Nup93/Nic96-like) family protein | chr3:21220606-21225305 REVERSE LENGTH=860)

HSP 1 Score: 183.726 bits (465), Expect = 2.187e-47
Identity = 84/108 (77.78%), Postives = 98/108 (90.74%), Query Frame = 3

Query:   27 TIEDFLWFKLSAVRDCPTGSSSIVLSDGLIPYSLDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKETGDEGYNIDAAHLSILLADHGVLSEGAGT 350
            TIEDFLWFKLS VRD   GSSS++++DGL+PYSLDDLQ+YLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPA++++S E GDEGYNIDA H++I L DH +LSEG+GT
Sbjct:  445 TIEDFLWFKLSCVRDVAGGSSSMIVNDGLVPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAIMHMSNEAGDEGYNIDAVHVAISLVDHSILSEGSGT 552

The following BLAST results are available for this feature:

BLAST of GR914292 vs. SwissProt
BLAST of GR914292 vs. TrEMBL
BLAST of GR914292 vs. TAIR peptide

BLAST of GR914292 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
Y2162_ARATH	1.453e-46	79.63	Uncharacterized protein At2g41620 OS=Arabidopsis t...	[more]

BLAST of GR914292 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q2HVW5_MEDTR	1.020e-53	95.37	Nucleoporin interacting component; Protein prenylt...	[more]
B7FN93_MEDTR	1.020e-53	95.37	Putative uncharacterized protein OS=Medicago trunc...	[more]
D7THT1_VITVI	4.010e-50	88.79	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BBM2_VITVI	4.010e-50	88.79	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LVR7_ARALY	2.974e-45	78.70	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9I510_POPTR	2.974e-45	78.50	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9M2L2_ARATH	5.072e-45	77.78	Putative uncharacterized protein F28O9.200 OS=Arab...	[more]
D7LH88_ARALY	4.294e-44	79.63	Nucleoporin interacting component family protein O...	[more]
B9N339_POPTR	1.632e-43	78.50	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q10LH9_ORYSJ	4.748e-43	75.93	Nucleoporin interacting component, putative, expre...	[more]

BLAST of GR914292 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G41620.1	1.282e-47	79.63	\| Symbols: \| Nucleoporin interacting component (N...	[more]
AT3G57350.1	2.187e-47	77.78	\| Symbols: \| Nucleoporin interacting component (N...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007231	Nucleoporin interacting component Nup93/Nic96	PANTHER	PTHR11225	NUCLEAR PORE COMPLEX PROTEIN NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN)	coord: 7..118 score: 4.6
IPR007231	Nucleoporin interacting component Nup93/Nic96	PFAM	PF04097	Nic96	coord: 9..117 score: 1

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR914292 ID=GR914292; Name=GR914292; organism=Cicer arietinum; type=EST; length=368bp
GATTTCGAGCGGCCGCCCGGGCAGGTACAATAGAGGATTTCTTGTGGTTC
AAATTGTCAGCTGTGCGGGACTGCCCCACTGGATCTTCGTCCATTGTTCT
AAGTGATGGTCTGATTCCATACAGTTTGGATGATTTGCAAAGTTACCTGA
ATAAATTTGAACCATCATACTATACAAAAAATGGAAAAGATCCTCTGGTA
TATCCATATGTCTTGCTTTTAAGCATTCAATTGCTTCCGGCTGTATTATA
CTTGTCTAAGGAAACAGGAGATGAAGGATATAACATTGATGCTGCACACC
TATCAATTCTACTAGCTGATCATGGGGTCCTTTCTGAAGGTGCTGGTACC
TCGGCCGCGACCACGCTA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **INTERPRO**
Term	Definition
IPR007231	Nucleoporin_int_Nup93/Nic96

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