GR397180
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR397180 vs. SwissProt
Match: TSR2_YEAST (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae GN=TSR2 PE=1 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 1.890e-7 Identity = 34/124 (27.42%), Postives = 63/124 (50.81%), Query Frame = 2 Query: 224 FNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSK--EPLYIDD--LEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERL------KEASRNPVAYAHVE 565 F G+ +++ +W AL AVE WGG +S K + V+ F K + I++ L A++DE F ++D S +A E++ ++ +C + N++ VE+L K+ ++ H+E Sbjct: 32 FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIEETLLYAMIDE----FETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHIE 151
BLAST of GR397180 vs. SwissProt
Match: TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 9.381e-7 Identity = 30/106 (28.30%), Postives = 59/106 (55.66%), Query Frame = 2 Query: 200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLS-FNLEIQDGSVEEVAEELMIMHEECLDGNFSSV 514 L + ++F+E + +L W L+ AV+ +GG S KA+ + + +FT + + L D++E + E M + F+ + DGS+ +VA+++ M ++C G + V Sbjct: 4 LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEV 108
BLAST of GR397180 vs. TrEMBL
Match: C6T0A1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.768e-46 Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 2 Query: 182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPES 679 M S+ L GQS+ +FNEGI LILSRWSALR+AVE EWGGR S LKA QLA D+L+WFTQSKEPLYIDDLE +LD+GMLS N+E++DGSVEEVAE+LM+MHEE L+GNFSS E L++A+ HV ++VN + + D NS+NM+ +I+ +S Sbjct: 1 MDGSRRLLGQSVGVFNEGICLILSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIV--DDNSSNMNPEISTSDS 164
BLAST of GR397180 vs. TrEMBL
Match: C6THB7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 6.818e-45 Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 2 Query: 182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPES 679 M S+ L GQS+ +FNEGI L+LSRWSALR+AVE EWGGR S LKA QLA+ +L+WFT+SKEPLYIDDLE +LD+GMLS N+E++DGSVEEVAE+LM+MHEE L+GNFSS E L++A+ HV ++ N + + D NS+ M++DI+ +S Sbjct: 1 MEGSRRLHGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLASGILNWFTRSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIANEDDTDEDGDDDEKMIV--DDNSSKMNLDISTSDS 164
BLAST of GR397180 vs. TrEMBL
Match: B9MZI7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595474 PE=4 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 6.381e-43 Identity = 87/140 (62.14%), Postives = 110/140 (78.57%), Query Frame = 2 Query: 164 TSIFTEMSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGN 583 T F ++ SSK L SI F EGI LILS+WSAL+ AVE EWGGR S L A+QLA+D+LSWFTQSKEPL+IDDLE +LDE MLS N I DGS+EEVAE+LMIMHEECL+GN+SS+++L+EA+ A+ HV++ V+ + Sbjct: 10 TGGFGQIGSSKQLTADSISQFREGICLILSKWSALQLAVENEWGGRGSGLLAEQLASDILSWFTQSKEPLFIDDLEGILDEAMLSLNTMIDDGSIEEVAEKLMIMHEECLEGNYSSIQKLREAAPRTRAHQHVKQAVDSD 149
BLAST of GR397180 vs. TrEMBL
Match: B9I8A2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_570967 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.422e-42 Identity = 84/134 (62.69%), Postives = 107/134 (79.85%), Query Frame = 2 Query: 173 FTEMSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVV 574 F+++ S K L SI F EGI LILS+WSAL+ AVE EWGGR SHL A+QLA+D+ SWFTQSKEPLYIDDLE+++DE MLS N I+DGSVEEVAE+LMIMHEECL+GN+SS+++L++ A+ HV++ V Sbjct: 12 FSQIGSVKQLTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYIDDLESIMDEAMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMGAHQHVKQAV 145
BLAST of GR397180 vs. TrEMBL
Match: C6TNP4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 9.214e-42 Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 2 Query: 182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMD 655 M S+ L+G SI +F+EGIGL+L RWS L TAVE EWGG S +KA QLA+D+LSWFTQSKEPLYIDDLE +LD+GMLS N+E++DGS+EEVAE+LM+M+EE L+ NFSS E ++A+ A V ++VN + + D NS+NM+ Sbjct: 1 MEGSRRLRGHSIGVFSEGIGLVLFRWSTLLTAVENEWGGHESRVKADQLASDILSWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSIEEVAEKLMVMYEEFLEDNFSSFENFRKANLEHAARPPVPQIVNDDEDDTDEDVGNDENMIVDDNSSNMN 158
BLAST of GR397180 vs. TrEMBL
Match: B9REU3_RICCO (Pre-rRNA-processing protein TSR2, putative OS=Ricinus communis GN=RCOM_1428870 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.019e-40 Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 2 Query: 185 SSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPESK 682 S +K L +S+ LF EGI LILSRWSAL+ AVE EWGGR S A Q+ D+ SWFTQSKEPLYIDDLE +LDEGM+S N I+DGSVEEVAE+LMIMHEECL+GN+ ++E+L++A + H+ + NG+ D N +NM +D K +SK Sbjct: 14 SLTKQLPPESVPLFQEGIFLILSRWSALQLAVENEWGGRGSRQLADQIGFDIFSWFTQSKEPLYIDDLENILDEGMISLNTMIEDGSVEEVAEKLMIMHEECLEGNYHTIEQLRQARPTAGVHQHIRQAANGDDDEDDDSSDDDDNSMGD-NRSNMMMDAPKFQSK 178
BLAST of GR397180 vs. TrEMBL
Match: D7TUQ4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_30.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021882001 PE=4 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.750e-35 Identity = 76/154 (49.35%), Postives = 100/154 (64.94%), Query Frame = 2 Query: 200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVD 661 L ++ +GI ++LS+WSAL+ AV EWGGR S A QLA D+ SWFT S+EPLYIDDLE +LDE MLS N +DGS+EEVAE+LM MHEECL+GN+ S+E+L+EA P + H+ + VN + + NS+NM VD Sbjct: 10 LSEEATHHLQQGIVMLLSQWSALQMAVHNEWGGRQSSQLADQLALDIFSWFTHSREPLYIDDLENILDEAMLSLNTMTEDGSIEEVAEKLMTMHEECLEGNYQSIEKLREAGSRPAVH-HIRQAVNEDNDDDDDDDDDNDENMGNDNSSNMIVD 162
BLAST of GR397180 vs. TrEMBL
Match: A5BU28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019040 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.414e-34 Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 2 Query: 200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKV 571 L ++ +GI ++LS+WSAL+ AV+ EWGGR S A QLA D+ SWFT S+EPLYIDDLE +LDE MLS N +DGS+EEVAE+LM MHEECL+GN+ S+E+L+EAS P + H+ +V Sbjct: 10 LSEEATHHLQQGIVMLLSQWSALQMAVQXEWGGRQSSQLADQLALDIFSWFTHSREPLYIDDLENILDEAMLSLNTMTEDGSIEEVAEKLMTMHEECLEGNYQSIEKLREASSRPAVH-HIRQV 132
BLAST of GR397180 vs. TrEMBL
Match: Q6JJ66_IPOTF (Putative uncharacterized protein OS=Ipomoea trifida PE=4 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 8.091e-30 Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 2 Query: 230 EGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLS-FNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEAS 535 EGI L+LSRW++L+ AV EWGGR SH K+Q+L+ + S+FTQSKE +YIDDLE +LDE MLS FN E+ DGS+EEVAE++MIMHE+C +GNF S+ LK + Sbjct: 21 EGINLVLSRWASLQMAVANEWGGRGSHQKSQELSERIFSFFTQSKEQVYIDDLEEILDEFMLSDFNTEVGDGSIEEVAEKMMIMHEQCTEGNFESINELKRTN 123
BLAST of GR397180 vs. TrEMBL
Match: C6JT21_9MYRT (Putative uncharacterized protein (Fragment) OS=Sonneratia alba PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.945e-29 Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 2 Query: 287 EWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVN 577 EWGGRNS +A +L ++ +WFTQSKEPLYIDDLE LDEG++S N E DGS+ EVAE+LMIMHEEC +GN+ SVE+L+EAS + + ++HV++VV+ Sbjct: 2 EWGGRNSLARANELCEEIFNWFTQSKEPLYIDDLEDKLDEGLISLNTEALDGSIGEVAEKLMIMHEECAEGNYISVEKLREASAHRIVHSHVKQVVS 98
BLAST of GR397180 vs. TAIR peptide
Match: AT5G27990.1 (| Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr5:10017358-10018265 FORWARD LENGTH=184) HSP 1 Score: 103.605 bits (257), Expect = 1.043e-22 Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 2 Query: 182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLY-IDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGN 583 M+ + L ++ + EGIGLIL RW+A+R AVE WGGR+S KA + A V +F QSK+P+ I+ L LLD+G+ N +DGSV+EVA L+ ++E+C +GN+ +E L+ A V KV NG+ Sbjct: 1 MNQNATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDPVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQ--TSASVVKVSNGD 133
BLAST of GR397180 vs. TAIR peptide
Match: AT3G22510.1 (| Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr3:7973544-7974087 FORWARD LENGTH=124) HSP 1 Score: 85.8853 bits (211), Expect = 2.251e-17 Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 2 Query: 236 IGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGML-SFNLEIQDGSVEEVAEELMIMHEECLDG 499 IG +LSRW L+ AV+ +WGG +S K+Q+LA ++ +QS + ++++E LL E +L SFN EI+DGS+EEVAE+LMI+HEE L G Sbjct: 35 IGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSNV-ITVEEIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122 The following BLAST results are available for this feature:
BLAST of GR397180 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 2
BLAST of GR397180 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR397180 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR397180 ID=GR397180; Name=GR397180; organism=Cicer arietinum; type=EST; length=685bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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