GR397180

EST Overview
NameGR397180
Unique NameGR397180
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length685
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of GR397180 vs. SwissProt
Match: TSR2_YEAST (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae GN=TSR2 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.890e-7
Identity = 34/124 (27.42%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  224 FNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSK--EPLYIDD--LEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERL------KEASRNPVAYAHVE 565
            F  G+ +++ +W AL  AVE  WGG +S  K   +   V+  F   K  +   I++  L A++DE    F   ++D S   +A E++ ++ +C + N++ VE+L      K+ ++      H+E
Sbjct:   32 FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIEETLLYAMIDE----FETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHIE 151          
BLAST of GR397180 vs. SwissProt
Match: TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 9.381e-7
Identity = 30/106 (28.30%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLS-FNLEIQDGSVEEVAEELMIMHEECLDGNFSSV 514
            L   + ++F+E +  +L  W  L+ AV+  +GG  S  KA+ +   +  +FT + + L  D++E  + E M + F+  + DGS+ +VA+++  M ++C  G  + V
Sbjct:    4 LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEV 108          
BLAST of GR397180 vs. TrEMBL
Match: C6T0A1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.768e-46
Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPES 679
            M  S+ L GQS+ +FNEGI LILSRWSALR+AVE EWGGR S LKA QLA D+L+WFTQSKEPLYIDDLE +LD+GMLS N+E++DGSVEEVAE+LM+MHEE L+GNFSS E L++A+       HV ++VN +             +  D NS+NM+ +I+  +S
Sbjct:    1 MDGSRRLLGQSVGVFNEGICLILSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIV--DDNSSNMNPEISTSDS 164          
BLAST of GR397180 vs. TrEMBL
Match: C6THB7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.818e-45
Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPES 679
            M  S+ L GQS+ +FNEGI L+LSRWSALR+AVE EWGGR S LKA QLA+ +L+WFT+SKEPLYIDDLE +LD+GMLS N+E++DGSVEEVAE+LM+MHEE L+GNFSS E L++A+       HV ++ N +             +  D NS+ M++DI+  +S
Sbjct:    1 MEGSRRLHGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLASGILNWFTRSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIANEDDTDEDGDDDEKMIV--DDNSSKMNLDISTSDS 164          
BLAST of GR397180 vs. TrEMBL
Match: B9MZI7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595474 PE=4 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.381e-43
Identity = 87/140 (62.14%), Postives = 110/140 (78.57%), Query Frame = 2
Query:  164 TSIFTEMSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGN 583
            T  F ++ SSK L   SI  F EGI LILS+WSAL+ AVE EWGGR S L A+QLA+D+LSWFTQSKEPL+IDDLE +LDE MLS N  I DGS+EEVAE+LMIMHEECL+GN+SS+++L+EA+    A+ HV++ V+ +
Sbjct:   10 TGGFGQIGSSKQLTADSISQFREGICLILSKWSALQLAVENEWGGRGSGLLAEQLASDILSWFTQSKEPLFIDDLEGILDEAMLSLNTMIDDGSIEEVAEKLMIMHEECLEGNYSSIQKLREAAPRTRAHQHVKQAVDSD 149          
BLAST of GR397180 vs. TrEMBL
Match: B9I8A2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_570967 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.422e-42
Identity = 84/134 (62.69%), Postives = 107/134 (79.85%), Query Frame = 2
Query:  173 FTEMSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVV 574
            F+++ S K L   SI  F EGI LILS+WSAL+ AVE EWGGR SHL A+QLA+D+ SWFTQSKEPLYIDDLE+++DE MLS N  I+DGSVEEVAE+LMIMHEECL+GN+SS+++L++      A+ HV++ V
Sbjct:   12 FSQIGSVKQLTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYIDDLESIMDEAMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMGAHQHVKQAV 145          
BLAST of GR397180 vs. TrEMBL
Match: C6TNP4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.214e-42
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 2
Query:  182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMD 655
            M  S+ L+G SI +F+EGIGL+L RWS L TAVE EWGG  S +KA QLA+D+LSWFTQSKEPLYIDDLE +LD+GMLS N+E++DGS+EEVAE+LM+M+EE L+ NFSS E  ++A+    A   V ++VN +             +  D NS+NM+
Sbjct:    1 MEGSRRLRGHSIGVFSEGIGLVLFRWSTLLTAVENEWGGHESRVKADQLASDILSWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSIEEVAEKLMVMYEEFLEDNFSSFENFRKANLEHAARPPVPQIVNDDEDDTDEDVGNDENMIVDDNSSNMN 158          
BLAST of GR397180 vs. TrEMBL
Match: B9REU3_RICCO (Pre-rRNA-processing protein TSR2, putative OS=Ricinus communis GN=RCOM_1428870 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.019e-40
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  185 SSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVDITKPESK 682
            S +K L  +S+ LF EGI LILSRWSAL+ AVE EWGGR S   A Q+  D+ SWFTQSKEPLYIDDLE +LDEGM+S N  I+DGSVEEVAE+LMIMHEECL+GN+ ++E+L++A      + H+ +  NG+                D N +NM +D  K +SK
Sbjct:   14 SLTKQLPPESVPLFQEGIFLILSRWSALQLAVENEWGGRGSRQLADQIGFDIFSWFTQSKEPLYIDDLENILDEGMISLNTMIEDGSVEEVAEKLMIMHEECLEGNYHTIEQLRQARPTAGVHQHIRQAANGDDDEDDDSSDDDDNSMGD-NRSNMMMDAPKFQSK 178          
BLAST of GR397180 vs. TrEMBL
Match: D7TUQ4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_30.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021882001 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.750e-35
Identity = 76/154 (49.35%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGNXXXXXXXXXXXXXITEDGNSANMDVD 661
            L  ++     +GI ++LS+WSAL+ AV  EWGGR S   A QLA D+ SWFT S+EPLYIDDLE +LDE MLS N   +DGS+EEVAE+LM MHEECL+GN+ S+E+L+EA   P  + H+ + VN +                + NS+NM VD
Sbjct:   10 LSEEATHHLQQGIVMLLSQWSALQMAVHNEWGGRQSSQLADQLALDIFSWFTHSREPLYIDDLENILDEAMLSLNTMTEDGSIEEVAEKLMTMHEECLEGNYQSIEKLREAGSRPAVH-HIRQAVNEDNDDDDDDDDDNDENMGNDNSSNMIVD 162          
BLAST of GR397180 vs. TrEMBL
Match: A5BU28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019040 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.414e-34
Identity = 70/124 (56.45%), Postives = 92/124 (74.19%), Query Frame = 2
Query:  200 LQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKV 571
            L  ++     +GI ++LS+WSAL+ AV+ EWGGR S   A QLA D+ SWFT S+EPLYIDDLE +LDE MLS N   +DGS+EEVAE+LM MHEECL+GN+ S+E+L+EAS  P  + H+ +V
Sbjct:   10 LSEEATHHLQQGIVMLLSQWSALQMAVQXEWGGRQSSQLADQLALDIFSWFTHSREPLYIDDLENILDEAMLSLNTMTEDGSIEEVAEKLMTMHEECLEGNYQSIEKLREASSRPAVH-HIRQV 132          
BLAST of GR397180 vs. TrEMBL
Match: Q6JJ66_IPOTF (Putative uncharacterized protein OS=Ipomoea trifida PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.091e-30
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  230 EGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLS-FNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEAS 535
            EGI L+LSRW++L+ AV  EWGGR SH K+Q+L+  + S+FTQSKE +YIDDLE +LDE MLS FN E+ DGS+EEVAE++MIMHE+C +GNF S+  LK  +
Sbjct:   21 EGINLVLSRWASLQMAVANEWGGRGSHQKSQELSERIFSFFTQSKEQVYIDDLEEILDEFMLSDFNTEVGDGSIEEVAEKMMIMHEQCTEGNFESINELKRTN 123          
BLAST of GR397180 vs. TrEMBL
Match: C6JT21_9MYRT (Putative uncharacterized protein (Fragment) OS=Sonneratia alba PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.945e-29
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 2
Query:  287 EWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVN 577
            EWGGRNS  +A +L  ++ +WFTQSKEPLYIDDLE  LDEG++S N E  DGS+ EVAE+LMIMHEEC +GN+ SVE+L+EAS + + ++HV++VV+
Sbjct:    2 EWGGRNSLARANELCEEIFNWFTQSKEPLYIDDLEDKLDEGLISLNTEALDGSIGEVAEKLMIMHEECAEGNYISVEKLREASAHRIVHSHVKQVVS 98          
BLAST of GR397180 vs. TAIR peptide
Match: AT5G27990.1 (| Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr5:10017358-10018265 FORWARD LENGTH=184)

HSP 1 Score: 103.605 bits (257), Expect = 1.043e-22
Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 2
Query:  182 MSSSKVLQGQSIQLFNEGIGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLY-IDDLEALLDEGMLSFNLEIQDGSVEEVAEELMIMHEECLDGNFSSVERLKEASRNPVAYAHVEKVVNGN 583
            M+ +  L  ++  +  EGIGLIL RW+A+R AVE  WGGR+S  KA +  A V  +F QSK+P+  I+ L  LLD+G+   N   +DGSV+EVA  L+ ++E+C +GN+  +E L+         A V KV NG+
Sbjct:    1 MNQNATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDPVKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQ--TSASVVKVSNGD 133          
BLAST of GR397180 vs. TAIR peptide
Match: AT3G22510.1 (| Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr3:7973544-7974087 FORWARD LENGTH=124)

HSP 1 Score: 85.8853 bits (211), Expect = 2.251e-17
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  236 IGLILSRWSALRTAVEREWGGRNSHLKAQQLAADVLSWFTQSKEPLYIDDLEALLDEGML-SFNLEIQDGSVEEVAEELMIMHEECLDG 499
            IG +LSRW  L+ AV+ +WGG +S  K+Q+LA ++    +QS   + ++++E LL E +L SFN EI+DGS+EEVAE+LMI+HEE L G
Sbjct:   35 IGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSNV-ITVEEIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122          
The following BLAST results are available for this feature:
BLAST of GR397180 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
TSR2_YEAST1.890e-727.42Pre-rRNA-processing protein TSR2 OS=Saccharomyces ... [more]
TSR2_DANRE9.381e-728.30Pre-rRNA-processing protein TSR2 homolog OS=Danio ... [more]
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BLAST of GR397180 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T0A1_SOYBN2.768e-4657.83Putative uncharacterized protein OS=Glycine max PE... [more]
C6THB7_SOYBN6.818e-4555.42Putative uncharacterized protein OS=Glycine max PE... [more]
B9MZI7_POPTR6.381e-4362.14Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I8A2_POPTR1.422e-4262.69Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6TNP4_SOYBN9.214e-4254.43Putative uncharacterized protein OS=Glycine max PE... [more]
B9REU3_RICCO1.019e-4053.01Pre-rRNA-processing protein TSR2, putative OS=Rici... [more]
D7TUQ4_VITVI3.750e-3549.35Whole genome shotgun sequence of line PN40024, sca... [more]
A5BU28_VITVI5.414e-3456.45Putative uncharacterized protein OS=Vitis vinifera... [more]
Q6JJ66_IPOTF8.091e-3061.17Putative uncharacterized protein OS=Ipomoea trifid... [more]
C6JT21_9MYRT8.945e-2960.82Putative uncharacterized protein (Fragment) OS=Son... [more]
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BLAST of GR397180 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G27990.11.043e-2242.22| Symbols: | Pre-rRNA-processing protein TSR2, co... [more]
AT3G22510.12.251e-1750.56| Symbols: | Pre-rRNA-processing protein TSR2, co... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2, conserved regionPFAMPF10273WGGcoord: 28..107
score: 1.4
NoneNo IPR availablePANTHERPTHR21250UNCHARACTERIZEDcoord: 26..167
score: 1.6
NoneNo IPR availableSEGsegsegcoord: 148..160
score
NoneNo IPR availableSEGsegsegcoord: 23..42
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR397180 ID=GR397180; Name=GR397180; organism=Cicer arietinum; type=EST; length=685bp
GGAAACCAATACCTTATAATTGCTTCTAATAAGCTCCAAATAAGCACTTA
TAATAAAGAAAAACGAAATTGAGTTTGAGAGAGGGAACACTCACCCCACA
CAGCGTCTTGTCTTTGTATTGTCTCCGATACATAAACCCTAATTCTCATT
CTCACCTCTTCCTACTTCTATATTCACAGAGATGTCGAGTTCTAAAGTGC
TCCAAGGACAATCAATCCAACTATTCAACGAAGGTATTGGTTTGATTTTG
AGCCGTTGGTCGGCGCTCCGAACTGCCGTTGAACGCGAGTGGGGTGGCCG
TAACTCTCACCTTAAAGCTCAACAACTCGCCGCCGACGTACTTTCTTGGT
TCACTCAATCCAAAGAGCCGCTTTATATTGATGACCTAGAAGCCTTACTC
GATGAAGGCATGCTTTCTTTCAATTTAGAGATTCAAGATGGAAGCGTTGA
AGAGGTAGCTGAAGAACTAATGATTATGCACGAAGAATGCTTAGATGGTA
ATTTTAGTTCTGTCGAGCGTCTCAAGGAAGCGAGCCGTAATCCAGTTGCT
TATGCTCATGTGGAAAAGGTGGTGAATGGTAATGAAGACGATGACGATGA
GGATGACGATTCTGATGAAAGCATTACAGAGGATGGTAATTCGGCAAACA
TGGATGTGGACATTACAAAACCCGAATCTAAGCGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2