GR404480

EST Overview
NameGR404480
Unique NameGR404480
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length454
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
[Close]
BLAST of GR404480 vs. SwissProt
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.155e-9
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            VTLLLR+NVDK EA             I+DGGI+LET+  +IA K   ++ D +APLSEQT++QA
Sbjct:   99 VTLLLRSNVDKREALDNLDLIFLSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQA 163
[Close]
BLAST of GR404480 vs. SwissProt
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.148e-8
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V ++LRNNVDK  A             IVDGGI+LET G +IAEKV +H ++    L+EQT+ QA
Sbjct:   99 VDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQA 163
[Close]
BLAST of GR404480 vs. SwissProt
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.828e-7
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLRNNV+K EA             +VD G++LET+  +IA KV   + +A   LSEQTLTQA
Sbjct:  103 VALLLRNNVEKMEALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQA 167
[Close]
BLAST of GR404480 vs. TrEMBL
Match: Q5QQ32_MEDTR (Coatomer zeta1 subunit OS=Medicago truncatula GN=copz1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.395e-18
Identity = 51/66 (77.27%), Postives = 52/66 (78.79%), Query Frame = -3 
Query:  255 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQAW 452
            VTLLLR+NVDKSEA             IVDGGIILETNGPLIAEKV SHNMDADAPLSEQTLTQAW
Sbjct:  102 VTLLLRSNVDKSEALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAW 167
[Close]
BLAST of GR404480 vs. TrEMBL
Match: B7FGX1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.395e-18
Identity = 51/66 (77.27%), Postives = 52/66 (78.79%), Query Frame = -3 
Query:  255 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQAW 452
            VTLLLR+NVDKSEA             IVDGGIILETNGPLIAEKV SHNMDADAPLSEQTLTQAW
Sbjct:  102 VTLLLRSNVDKSEALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHNMDADAPLSEQTLTQAW 167
[Close]
BLAST of GR404480 vs. TrEMBL
Match: Q9MAZ9_SOYBN (Nonclathrin coat protein zeta1-COP OS=Glycine max GN=copz1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.998e-17
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = -3 
Query:  255 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQAW 452
            VTLLLR+NVDK EA             IVDGG+ILETNGPLIAEKV SH++DADAPLSEQTLTQAW
Sbjct:  102 VTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAW 167
[Close]
BLAST of GR404480 vs. TrEMBL
Match: Q9MAZ7_SOLLC (Nonclathrin coat protein zeta1-COP OS=Solanum lycopersicum GN=copz1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.265e-11
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            VTLLLRNNVD+ EA             IVDGG++LET+G  IA KV SHNMD  APLSEQT+TQA
Sbjct:  106 VTLLLRNNVDQREALENLDLILLCLDEIVDGGMVLETDGNTIAGKVSSHNMDDGAPLSEQTITQA 170
[Close]
BLAST of GR404480 vs. TrEMBL
Match: D7TZW4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016804001 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.069e-10
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLRNN+DK EA             IVDGG+ILET+  +I  KV +H++DA APLSEQTLTQA
Sbjct:  105 VALLLRNNIDKREALENLDLILLCLDEIVDGGMILETDASVIEGKVAAHSIDAGAPLSEQTLTQA 169
[Close]
BLAST of GR404480 vs. TrEMBL
Match: Q9MAZ6_SOLLC (Nonclathrin coat protein zeta2-COP OS=Solanum lycopersicum GN=copz2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.314e-10
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            VTLLLR+NV++ EA             IVDGG+ILET+G +IA KV SHNMD  +P+SEQT++QA
Sbjct:  105 VTLLLRSNVEQREALENLDLILLCLDEIVDGGMILETDGSVIAGKVASHNMDDGSPISEQTISQA 169
[Close]
BLAST of GR404480 vs. TrEMBL
Match: D7TJZ9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021391001 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.019e-9
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLR NVDK EA             I+DGGI+LET+  +IA KV SH++D+ APLSEQT++QA
Sbjct:  122 VGLLLRGNVDKKEALENLDLILLCLDEIIDGGIVLETDANVIAGKVASHSLDSGAPLSEQTISQA 186
[Close]
BLAST of GR404480 vs. TrEMBL
Match: Q9MAZ1_SOYBN (Nonclathrin coat protein zeta2-COP OS=Glycine max GN=copz2 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLR NVDK EA             IVDGGIILET+  +IA KV S+++D+ APLSEQTL+QA
Sbjct:  101 VGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQA 165
[Close]
BLAST of GR404480 vs. TrEMBL
Match: C6T321_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLR NVDK EA             IVDGGIILET+  +IA KV S+++D+ APLSEQTL+QA
Sbjct:  101 VGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQA 165
[Close]
BLAST of GR404480 vs. TrEMBL
Match: C6SYI1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLR NVDK EA             IVDGGIILET+  +IA KV S+++D+ APLSEQTL+QA
Sbjct:  100 VGLLLRGNVDKKEALENLDLILLCIDEIVDGGIILETDPNVIAGKVASNSIDSGAPLSEQTLSQA 164
[Close]
BLAST of GR404480 vs. TAIR peptide
Match: AT1G60970.1 (| Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177)

HSP 1 Score: 60.077 bits (144), Expect = 6.071e-10
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            VTLLLR+NVDK EA             I+DGGI+LET+  +IA K   ++ D +APLSEQT++QA
Sbjct:   99 VTLLLRSNVDKREALDNLDLIFLSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQA 163
[Close]
BLAST of GR404480 vs. TAIR peptide
Match: AT4G08520.1 (| Symbols: | SNARE-like superfamily protein | chr4:5417887-5420295 FORWARD LENGTH=181)

HSP 1 Score: 54.299 bits (129), Expect = 3.331e-8
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLRNNV+K EA             +VD G++LET+  +IA KV   + +A   LSEQTLTQA
Sbjct:  103 VALLLRNNVEKMEALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQA 167
[Close]
BLAST of GR404480 vs. TAIR peptide
Match: AT3G09800.1 (| Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179)

HSP 1 Score: 52.373 bits (124), Expect = 1.266e-7
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = -3 
Query:  258 VTLLLRNNVDKSEAXXXXXXXXXXXXXIVDGGIILETNGPLIAEKVPSHNMDADAPLSEQTLTQA 452
            V LLLR+NV+K EA             +VD G++LET+  +IA KV   + +A   LSEQTLTQA
Sbjct:  101 VALLLRSNVEKMEALENLDLIFLCLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQA 165
The following BLAST results are available for this feature:
BLAST of GR404480 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
COPZ1_ARATH5.155e-950.77Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ1_ORYSJ1.148e-847.69Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ3_ARATH2.828e-747.69Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
back to top
BLAST of GR404480 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q5QQ32_MEDTR1.395e-1877.27Coatomer zeta1 subunit OS=Medicago truncatula GN=c... [more]
B7FGX1_MEDTR1.395e-1877.27Putative uncharacterized protein OS=Medicago trunc... [more]
Q9MAZ9_SOYBN9.998e-1771.21Nonclathrin coat protein zeta1-COP OS=Glycine max ... [more]
Q9MAZ7_SOLLC1.265e-1161.54Nonclathrin coat protein zeta1-COP OS=Solanum lyco... [more]
D7TZW4_VITVI4.069e-1056.92Whole genome shotgun sequence of line PN40024, sca... [more]
Q9MAZ6_SOLLC5.314e-1055.38Nonclathrin coat protein zeta2-COP OS=Solanum lyco... [more]
D7TJZ9_VITVI2.019e-953.85Whole genome shotgun sequence of line PN40024, sca... [more]
Q9MAZ1_SOYBN1.002e-856.92Nonclathrin coat protein zeta2-COP OS=Glycine max ... [more]
C6T321_SOYBN1.002e-856.92Putative uncharacterized protein OS=Glycine max PE... [more]
C6SYI1_SOYBN1.002e-856.92Putative uncharacterized protein OS=Glycine max PE... [more]
back to top
BLAST of GR404480 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G60970.16.071e-1050.77| Symbols: | SNARE-like superfamily protein | chr... [more]
AT4G08520.13.331e-847.69| Symbols: | SNARE-like superfamily protein | chr... [more]
AT3G09800.11.266e-746.15| Symbols: | SNARE-like superfamily protein | chr... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 28..38
score
NoneNo IPR availableGENE3D3.30.450.60no descriptioncoord: 7..47
score: 4.2
NoneNo IPR availablePANTHERPTHR11043ZETA-COAT PROTEINcoord: 1..79
score: 3.9
NoneNo IPR availableSEGsegsegcoord: 15..28
score
IPR011012Longin-likeSUPERFAMILY64356SNARE-likecoord: 7..53
score: 3.4
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 7..49
score: 0.0

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR404480 ID=GR404480; Name=GR404480; organism=Cicer arietinum; type=EST; length=454bp
TGGTAATGGTGGTCATAACAAAGTAACTTGAATTCAGGAAAGCAATTCCA
GATCTTAGTAAAAGACTGGATTTAGTATATTGTTTTTCCATTTTGTGAAA
AAATACAAATTAAAATGGGGGGATAAAATAAAACAACTCTTGTTAACAAA
AAAACTTAACTACTAAAATTAATATAAGCAACAACACATTTAAGTACATC
ATCATAAGAAAATCATGTCAAAAGAGTTCTTGTAAAAGTGTCTCTGGCTG
TAGCCCATGCCTGAGTTAGTGTCTGCTCTGACAAGGGGGCATCAGCATCC
ATGTTATGGGAGGGCACTTTTTCGGCTATAAGAGGTCCATTTGTTTCAAG
TATAATCCCTCCATCAACAATCTCATCAAGGCATAAAAGAATGAGATCCA
AGTTCTCAAGAGCCTCACTTTTGTCAACATTGTTCCTCAGCAAAAGGGTG
ACTG
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR022775AP_mu_sigma_su