GR408952

EST Overview
NameGR408952
Unique NameGR408952
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length766
Libraries
Library NameType
LIBEST_024777 ICC1882 dehydration stressed root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of GR408952 vs. SwissProt
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.366e-12
Identity = 42/75 (56.00%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H K I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of GR408952 vs. SwissProt
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.991e-12
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H   I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of GR408952 vs. SwissProt
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.991e-12
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H   I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of GR408952 vs. SwissProt
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.462e-11
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H K+I  S   K CPK KAIKRF VRNI  + A  DV  ACV+D Y L KLYAK    +SC IH+H
Sbjct:   17 HVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82          
BLAST of GR408952 vs. SwissProt
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.535e-8
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = -3
Query:  279 KNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHS 485
            KN  H  FI  +  G+ CPK KAIK+F+VRNI    A  D+  A  Y QY L KLY K    ++C IHS
Sbjct:   13 KNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHS 81          
BLAST of GR408952 vs. SwissProt
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.909e-7
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = -3
Query:  279 QTQGRGAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHS 515
            +  GRG    K   H K+I  +   +  PK KAIK+F++RNI    A  D+  A VY+ Y L KLYAK    +SC IHS
Sbjct:    6 RNNGRG---KKGRGHVKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHS 81          
BLAST of GR408952 vs. SwissProt
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.105e-7
Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = -3
Query:  279 QGRGAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHS 509
            +GRG ++   C        +  G+  PK KAIK+F+VRNI    A  D+  A  YD Y L KLY K    +SC IHS
Sbjct:   13 KGRGHVRPIRC--------TNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHS 81          
BLAST of GR408952 vs. TrEMBL
Match: Q9ZT03_MEDSA (Clone MS56 unknown mRNA OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.646e-14
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = -3
Query:  276 EHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 476
            +H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVYDQYTL KLY K Q  +SC IHSH
Sbjct:   10 DHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLHKLYVKMQYCVSCAIHSH 76          
BLAST of GR408952 vs. TrEMBL
Match: Q9SWS9_PEA (Ribosomal protein S26 OS=Pisum sativum GN=RPS26 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.513e-14
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVYDQYTL KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: D7T4E4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_67.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032696001 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.894e-14
Identity = 48/83 (57.83%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  276 VIQTQGRGAIKNKNCE-HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 521
            V+  + R   +NK+   H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVYD YTL KLYAK Q  +SC IHSH
Sbjct:   26 VMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSH 108          
BLAST of GR408952 vs. TrEMBL
Match: D7SJK1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024576001 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.698e-14
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVYD YTL KLYAK Q  +SC IHSH
Sbjct:   45 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSH 110          
BLAST of GR408952 vs. TrEMBL
Match: C6TAV9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-13
Identity = 43/66 (65.15%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVY+QYTL KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: C6SXR4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-13
Identity = 43/66 (65.15%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVY+QYTL KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: C6SXI6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-13
Identity = 43/66 (65.15%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVY+QYTL KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: C6SWA5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-13
Identity = 43/66 (65.15%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVY+QYTL KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: C6T4K2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.240e-13
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  276 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  ACVY+QYT+ KLY K Q  +SC IHSH
Sbjct:   17 HVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTIPKLYVKMQYCVSCAIHSH 82          
BLAST of GR408952 vs. TrEMBL
Match: A9PJB6_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.229e-11
Identity = 40/65 (61.54%), Postives = 43/65 (66.15%), Query Frame = -3
Query:  279 HRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHS 473
            H KFI  S  GK CPK KAIKRFLVRNI  + A  DV  +CVYD Y L KLY K Q  +SC IHS
Sbjct:   17 HTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQESCVYDGYVLPKLYVKMQYCVSCAIHS 81          
BLAST of GR408952 vs. TAIR peptide
Match: AT3G56340.1 (| Symbols: | Ribosomal protein S26e family protein | chr3:20892309-20893343 REVERSE LENGTH=130)

HSP 1 Score: 72.7886 bits (177), Expect = 2.341e-13
Identity = 42/75 (56.00%), Postives = 46/75 (61.33%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H K I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of GR408952 vs. TAIR peptide
Match: AT2G40590.1 (| Symbols: | Ribosomal protein S26e family protein | chr2:16945215-16946345 REVERSE LENGTH=131)

HSP 1 Score: 70.8626 bits (172), Expect = 8.894e-13
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H   I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
BLAST of GR408952 vs. TAIR peptide
Match: AT2G40510.1 (| Symbols: | Ribosomal protein S26e family protein | chr2:16918506-16919623 FORWARD LENGTH=133)

HSP 1 Score: 70.8626 bits (172), Expect = 8.894e-13
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = -3
Query:  276 GAIKNKNCEHRKFI*GSGYGKKCPKIKAIKRFLVRNIGARTAFGDVH*ACVYDQYTLLKLYAKKQ*FLSCVIHSH 500
            G     N  H   I  S  GK CPK KAIKRF+VRNI  + A  DV  A VY+ YTL KLYAK Q  +SC IHSH
Sbjct:    8 GGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSH 82          
The following BLAST results are available for this feature:
BLAST of GR408952 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
RS263_ARATH2.366e-1256.0040S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH8.991e-1254.6740S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH8.991e-1254.6740S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ4.462e-1156.0640S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_CAEEL3.535e-847.8340S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_OCTVU3.909e-743.0440S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_BRUPA5.105e-741.5640S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
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BLAST of GR408952 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9ZT03_MEDSA2.646e-1465.67Clone MS56 unknown mRNA OS=Medicago sativa PE=2 SV... [more]
Q9SWS9_PEA4.513e-1466.67Ribosomal protein S26 OS=Pisum sativum GN=RPS26 PE... [more]
D7T4E4_VITVI5.894e-1457.83Whole genome shotgun sequence of line PN40024, sca... [more]
D7SJK1_VITVI7.698e-1466.67Whole genome shotgun sequence of line PN40024, sca... [more]
C6TAV9_SOYBN1.313e-1365.15Putative uncharacterized protein OS=Glycine max PE... [more]
C6SXR4_SOYBN1.313e-1365.15Putative uncharacterized protein OS=Glycine max PE... [more]
C6SXI6_SOYBN1.313e-1365.15Putative uncharacterized protein OS=Glycine max PE... [more]
C6SWA5_SOYBN1.313e-1365.15Putative uncharacterized protein OS=Glycine max PE... [more]
C6T4K2_SOYBN2.240e-1363.64Putative uncharacterized protein OS=Glycine max PE... [more]
A9PJB6_9ROSI1.229e-1161.54Putative uncharacterized protein OS=Populus tricho... [more]
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BLAST of GR408952 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G56340.12.341e-1356.00| Symbols: | Ribosomal protein S26e family protei... [more]
AT2G40590.18.894e-1354.67| Symbols: | Ribosomal protein S26e family protei... [more]
AT2G40510.18.894e-1354.67| Symbols: | Ribosomal protein S26e family protei... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 32..48
score
NoneNo IPR availableSEGsegsegcoord: 10..34
score: NAcoord: 40..56
score
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 2..31
score: 1.3

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR408952 ID=GR408952; Name=GR408952; organism=Cicer arietinum; type=EST; length=766bp
GCAAGTATTGCCCAAGAACTAAAGCAATAAAGCAACAATATATTGTGTCT
ACATGAAACCAAAAATTTAAAAACAAGCAAAGGAAACTGAATTTGGGACA
TAAAAAATCAAAAATCTTGAAATTATCTCAGGTACGGGCAGGAACAGCTC
CAGCTACGGCAGGGCGAGGTGCTTGACCAGGCTGACTCAAGCCTTGGGGT
ATCATCCCTGCCCCTGACCAAACGCTTAAGAAGGTCACGCTTCCTCCTAT
CAGTGCGAGATCTAACCCTCACCACATGTGAATGGATAACACATGAAAGA
AATTACTGCTTTTTCGCATACAACTTAAGAAGCGTGTATTGATCATACAC
ACAAGCTTAATGAACATCTCCAAATGCGGTCCGCGCCCCAATGTTCCTTA
CAAGAAATCTCTTGATTGCCTTAATCTTGGGGCATTTTTTACCGTACCCC
GATCCCTAGATGAATTTCCTATGTTCACAGTTTTTATTTTTTATCGCCCC
CCTTCCTTGCGTTTGTATGACAAGTTTTAACTTTGATATGGATTTCTCTT
ATAGGTCCCTCCACATTGGATATTAGTGTTTCTCCCCCCATACTTTTTCT
TTAACTCTATTTCTCTATCCCCAAAGCAATTCATTTTAATCGTTATATAA
CCTCATTTTATTACTTTTTTATTTTTTTTTATTAATATTTTCCCCTTCTA
TACTTCAACATATTTTTTTGTTTTAATCTATGGTACTAATTTTTCAATAT
NAAGGNCGGTCCCTTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_eS26