GR393147

EST Overview
NameGR393147
Unique NameGR393147
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length263
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of GR393147 vs. SwissProt
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.223e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.220e-24
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.948e-22
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.109e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.109e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.109e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.109e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 3.109e-20
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. SwissProt
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.910e-18
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKD-VVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSL
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSL 61          
BLAST of GR393147 vs. SwissProt
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.910e-18
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct:    1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: D7U1W4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_102.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010854001 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.533e-25
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2
Query:   80 TMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            T PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:   27 TPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSL 87          
BLAST of GR393147 vs. TrEMBL
Match: D7SPL7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019051001 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.533e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:   59 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118          
BLAST of GR393147 vs. TrEMBL
Match: C6T0S7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.533e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: A9PDL5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.615e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDTEKADKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: C6SWA8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: C5YH95_SORBI (Putative uncharacterized protein Sb07g025470 OS=Sorghum bicolor GN=Sb07g025470 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: B9T6H4_RICCO (60S ribosomal protein L38, putative OS=Ricinus communis GN=RCOM_1205980 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:   28 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 87          
BLAST of GR393147 vs. TrEMBL
Match: B6SPK5_MAIZE (60S ribosomal protein L38 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: B4FHI7_MAIZE (60S ribosomal protein L38 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD EKA+KLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSL 60          
BLAST of GR393147 vs. TrEMBL
Match: A9P978_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_567190 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.416e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60          
BLAST of GR393147 vs. TAIR peptide
Match: AT3G59540.1 (| Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69)

HSP 1 Score: 117.472 bits (293), Expect = 1.738e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60          
BLAST of GR393147 vs. TAIR peptide
Match: AT2G43460.1 (| Symbols: | Ribosomal L38e protein family | chr2:18046285-18047292 REVERSE LENGTH=69)

HSP 1 Score: 117.472 bits (293), Expect = 1.738e-27
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query:   83 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSL 262
            MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60          
The following BLAST results are available for this feature:
BLAST of GR393147 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL38_ARATH2.223e-2695.0060S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC1.220e-2490.0060S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE1.948e-2285.0060S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_RAT3.109e-2078.3360S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_MOUSE3.109e-2078.3360S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_MACFA3.109e-2078.3360S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_HUMAN3.109e-2078.3360S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN3.109e-2078.3360S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_ORNPR2.910e-1875.4160S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_LYSTE2.910e-1871.6760S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
back to top
BLAST of GR393147 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7U1W4_VITVI1.533e-2596.72Whole genome shotgun sequence of line PN40024, sca... [more]
D7SPL7_VITVI1.533e-2598.33Whole genome shotgun sequence of line PN40024, sca... [more]
C6T0S7_SOYBN1.533e-2598.33Putative uncharacterized protein OS=Glycine max PE... [more]
A9PDL5_POPTR2.615e-2596.67Putative uncharacterized protein OS=Populus tricho... [more]
C6SWA8_SOYBN3.416e-2596.67Putative uncharacterized protein OS=Glycine max PE... [more]
C5YH95_SORBI3.416e-2596.67Putative uncharacterized protein Sb07g025470 OS=So... [more]
B9T6H4_RICCO3.416e-2596.6760S ribosomal protein L38, putative OS=Ricinus com... [more]
B6SPK5_MAIZE3.416e-2596.6760S ribosomal protein L38 OS=Zea mays PE=3 SV=1[more]
B4FHI7_MAIZE3.416e-2596.6760S ribosomal protein L38 OS=Zea mays PE=3 SV=1[more]
A9P978_POPTR3.416e-2596.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
back to top
BLAST of GR393147 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G59540.11.738e-2795.00| Symbols: | Ribosomal L38e protein family | chr3... [more]
AT2G43460.11.738e-2795.00| Symbols: | Ribosomal L38e protein family | chr2... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 19..77
score: 2.2
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 19..77
score: 3.6
NoneNo IPR availableSEGsegsegcoord: 21..38
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR393147 ID=GR393147; Name=GR393147; organism=Cicer arietinum; type=EST; length=263bp
TAGTTTATCAACCCTAAATTCTCAACATTGAAGGTTGAGCGTGCCGTTTG
TTATTTGGGAGGAAATTGTAGCGAAACCAACAATGCCTAAGCAAATTCAC
GAGATTAAAGACTTCCTCCTTACAGCCCGGAGGAAGGATGCACGCTCCGT
TAAAATCAAGAGGAGTAAAGATGTGGTTAAGTTCAAGGTCAGATGCTCCA
AGTATTTGTACACACTTTGTGTGTTTGATGTTGAGAAAGCTGATAAGTTG
AAGCAATCACTTC
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_eL38