GR395026

EST Overview


Name	GR395026
Unique Name	GR395026
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	741

Libraries


Library Name	Type
LIBEST_024780 ICC1882 PEG induced drought cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR395026 vs. SwissProt
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.072e-57
Identity = 102/164 (62.20%), Postives = 129/164 (78.66%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M SEEVLK VFPLLEG DLASCM VCKQW++IA+DDF+WKC CAK+WPS+CKR  PPT TYYK+Y+TF KR+  R L PPR+SF++LEFFIDIW+E  L+FS ++PG  L++G ++   G+ ++L+ HL   +YKM  P EPRFTIP   NQ+VSVSV+V R D
Sbjct:    1 MFSEEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYKMYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISNVLRTHLGRPDYKMVVPAEPRFTIP--LNQSVSVSVLVARND 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: B7FID8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 3.542e-85
Identity = 150/164 (91.46%), Postives = 157/164 (95.73%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            MESEEVLKAVFPLLEGVDLASCMAVCKQW +IAKDDFFWKC+CA RWPSICKRPNP T TYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAE++LLFSE V GSVLQSGF+SP+SGVCDLLK+HLE SEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD
Sbjct:    1 MESEEVLKAVFPLLEGVDLASCMAVCKQWNDIAKDDFFWKCMCANRWPSICKRPNPLTETYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAEDILLFSEAVSGSVLQSGFRSPASGVCDLLKYHLESSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 164

[Close]

BLAST of GR395026 vs. TrEMBL
Match: C6TIC7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 4.330e-83
Identity = 147/164 (89.63%), Postives = 154/164 (93.90%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M SEEVLKAVFP L+GVDLASCMAV KQWK+IA DDF WKCLCAKRWPSICK+PNP TLTYYK YKTFHKRQ RRTLLPPRISFDDLEFFIDIWAEN LLFSEVVPGSVLQ+GFK+P+SGVCD+LKF LEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD
Sbjct:    1 MASEEVLKAVFPFLDGVDLASCMAVDKQWKDIASDDFLWKCLCAKRWPSICKQPNPSTLTYYKFYKTFHKRQHRRTLLPPRISFDDLEFFIDIWAENTLLFSEVVPGSVLQAGFKAPASGVCDMLKFQLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 164

[Close]

BLAST of GR395026 vs. TrEMBL
Match: B9SJD7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.934e-68
Identity = 121/164 (73.78%), Postives = 140/164 (85.37%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  +EVLKAVFPLL+GVDLASCM V KQW++ A+DD+FWKCLCAKRWPSICKRPNPPT+TY KLY+TF+KRQ R+TLLPPR+SFDDLEFFIDIW+E  L+FSEVVPG VL  G K P  G+CD+L+FHLEG +YKMT PVEPR  IP   +Q VSVSV+VGRKD
Sbjct:    1 MSYDEVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVTYCKLYQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPGICDILRFHLEGPDYKMTLPVEPRVKIP--LSQTVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: A0ELU9_PETIN (Non-S-locus F-box protein 23 (Fragment) OS=Petunia integrifolia subsp. inflata GN=FBP23 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 4.350e-67
Identity = 115/164 (70.12%), Postives = 138/164 (84.15%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  EE+LKAVFP LEG DL +CM VCKQW++IA+DD+FWKCLC+K+WPSICKRP+PPT+TYYKL++ FHKRQ RRT+LPP +SF+DLEF+IDIW E  ++FS+VVPG VLQ G   P  G+CD+L+FHLEG EYKMT PVEPRFTIP    Q VSVSV+VGRKD
Sbjct:    6 MACEEILKAVFPFLEGTDLVTCMGVCKQWRDIARDDYFWKCLCSKKWPSICKRPSPPTITYYKLFQNFHKRQYRRTVLPPSLSFNDLEFYIDIWTEEKIIFSDVVPGPVLQKGIWIPPPGICDVLRFHLEGPEYKMTLPVEPRFTIP--LCQTVSVSVLVGRKD 167

[Close]

BLAST of GR395026 vs. TrEMBL
Match: B9H0J7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_556407 PE=4 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.266e-66
Identity = 116/164 (70.73%), Postives = 140/164 (85.37%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  EE+LK VFPLLEG DLASCMAVCKQW+++A+DD+FWKC+CAKRWPSICKR +PPT+TYYKLY+TF+KRQ R+ LLPPR+SFD+LEFFIDIW ++ L+FSEVVPG VL +G KSP  G+CD L+F LEG + KMT PVEPRF +P G  + VSVSV+VGRKD
Sbjct:    1 MSYEEILKVVFPLLEGADLASCMAVCKQWRDMAQDDYFWKCVCAKRWPSICKRSDPPTVTYYKLYQTFYKRQHRQILLPPRLSFDNLEFFIDIWTDDKLIFSEVVPGPVLHTGIKSPPPGICDRLRFQLEGPDCKMTLPVEPRFKVPLG--ETVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: B9NF06_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_596221 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.387e-65
Identity = 116/164 (70.73%), Postives = 137/164 (83.54%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M   E+LKAVFPLLEG DLASC+AVCKQW++IA+DD+ WKCLCAKRWPSICKRPNPPT+TYYKLY+TF+K Q+++TLLPPR+SFD+LEFFIDIW  + L+FSEVV G VLQ+G K P   +CD L FHLEG +YKM  PVEPRF  P G  + VSVSV+VGRKD
Sbjct:    1 MSYVEILKAVFPLLEGADLASCVAVCKQWRDIAQDDYLWKCLCAKRWPSICKRPNPPTVTYYKLYQTFYKHQRQQTLLPPRLSFDNLEFFIDIWTRDKLIFSEVVSGPVLQTGIKCPPPRICDRLGFHLEGPDYKMILPVEPRFKAPLG--ETVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: B9IK67_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_577740 PE=4 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 4.071e-65
Identity = 116/164 (70.73%), Postives = 137/164 (83.54%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M   E+LKAVFPLLEG DLASC+AVCKQW++IA+DD+ WKCLCAKRWPSICKRPNPPT+TYYKLY+TF+K Q+++TLLPPR+SFD+LEFFIDIW  + L+FSEVV G VLQ+G K P   +CD L FHLEG +YKM  PVEPRF  P G  + VSVSV+VGRKD
Sbjct:    1 MSYVEILKAVFPLLEGADLASCVAVCKQWRDIAQDDYLWKCLCAKRWPSICKRPNPPTVTYYKLYQTFYKHQRQQTLLPPRLSFDNLEFFIDIWTGDKLIFSEVVSGPVLQTGIKCPPPRICDRLGFHLEGPDYKMILPVEPRFKAPLG--ETVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: Q307Y5_SOLTU (F-box family protein-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.547e-64
Identity = 111/164 (67.68%), Postives = 136/164 (82.93%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  +E+LKAVFP LEG +LA+CM VCKQW++IA+DD+FWKCLC+K+WPSICKR +PPT+TYY L++ FH+R  RRT+LPP++SF DLEF+IDIW E  ++FS+VVPG VLQ G   P  G+CD+LKFHLEG EYKMT PVEPRFTIP    Q VSVSV+VGRKD
Sbjct:    1 MACDEILKAVFPFLEGTELATCMLVCKQWRDIARDDYFWKCLCSKKWPSICKRSSPPTVTYYNLFQNFHRRPYRRTVLPPKLSFSDLEFYIDIWTEEKIIFSDVVPGPVLQKGIWIPPPGICDVLKFHLEGPEYKMTLPVEPRFTIP--LCQTVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: D7SVC8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032932001 PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 4.501e-64
Identity = 116/164 (70.73%), Postives = 135/164 (82.32%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  EEVLKAVFPLLEG DLASCM VCKQW++IA+DD+FWKC+CAKRWPSICKRP+PPT+TYYKL +TF+KRQ  R L PPR+SF+DLEF+IDIW     +FSEVVPG VLQ+G   P  G+CD+L+FHLEG EYKMT  VEPRFT+P      VSVSV+VGRKD
Sbjct:    1 MAYEEVLKAVFPLLEGADLASCMLVCKQWRDIAQDDYFWKCVCAKRWPSICKRPSPPTVTYYKLCQTFYKRQHCRALPPPRLSFNDLEFYIDIWTGERSIFSEVVPGPVLQTGIVVPPPGICDMLRFHLEGPEYKMTLLVEPRFTVP--LMATVSVSVLVGRKD 162

[Close]

BLAST of GR395026 vs. TrEMBL
Match: Q2XTC8_SOLTU (F-box family protein-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 8.785e-60
Identity = 107/164 (65.24%), Postives = 131/164 (79.88%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M  EE+LKAVFP LEG +LA+CM VCKQW++IA+DD+FWK LC+K+WPSICKR +PPT+TYY L++ FHKR  RRT+LPP++SF DLEF+IDIW E  ++FS+VVPG VLQ G   P  G+CD+LKFHLEG EYKMT PVE    I +   Q VSVSV+VGRKD
Sbjct:    1 MACEEILKAVFPFLEGTELATCMIVCKQWRDIAQDDYFWKFLCSKKWPSICKRSSPPTVTYYNLFQNFHKRPYRRTVLPPKLSFSDLEFYIDIWTEEKIIFSDVVPGPVLQKGIWIPPPGICDVLKFHLEGPEYKMTLPVE---QIYNSFVQTVSVSVLVGRKD 161

[Close]

BLAST of GR395026 vs. TAIR peptide
Match: AT5G39250.1 (| Symbols: | F-box family protein | chr5:15724860-15725618 FORWARD LENGTH=252)

HSP 1 Score: 221.09 bits (562), Expect = 5.049e-58
Identity = 102/164 (62.20%), Postives = 129/164 (78.66%), Query Frame = 2

Query:  248 MESEEVLKAVFPLLEGVDLASCMAVCKQWKEIAKDDFFWKCLCAKRWPSICKRPNPPTLTYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAENLLLFSEVVPGSVLQSGFKSPSSGVCDLLKFHLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMVGRKD 739
            M SEEVLK VFPLLEG DLASCM VCKQW++IA+DDF+WKC CAK+WPS+CKR  PPT TYYK+Y+TF KR+  R L PPR+SF++LEFFIDIW+E  L+FS ++PG  L++G ++   G+ ++L+ HL   +YKM  P EPRFTIP   NQ+VSVSV+V R D
Sbjct:    1 MFSEEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYKMYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISNVLRTHLGRPDYKMVVPAEPRFTIP--LNQSVSVSVLVARND 162

The following BLAST results are available for this feature:

BLAST of GR395026 vs. SwissProt
BLAST of GR395026 vs. TrEMBL
BLAST of GR395026 vs. TAIR peptide

BLAST of GR395026 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
FB270_ARATH	5.072e-57	62.20	F-box protein At5g39250 OS=Arabidopsis thaliana GN...	[more]

BLAST of GR395026 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FID8_MEDTR	3.542e-85	91.46	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TIC7_SOYBN	4.330e-83	89.63	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9SJD7_RICCO	3.934e-68	73.78	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0ELU9_PETIN	4.350e-67	70.12	Non-S-locus F-box protein 23 (Fragment) OS=Petunia...	[more]
B9H0J7_POPTR	1.266e-66	70.73	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9NF06_POPTR	2.387e-65	70.73	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9IK67_POPTR	4.071e-65	70.73	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q307Y5_SOLTU	1.547e-64	67.68	F-box family protein-like OS=Solanum tuberosum PE=...	[more]
D7SVC8_VITVI	4.501e-64	70.73	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q2XTC8_SOLTU	8.785e-60	65.24	F-box family protein-like OS=Solanum tuberosum PE=...	[more]

BLAST of GR395026 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G39250.1	5.049e-58	62.20	\| Symbols: \| F-box family protein \| chr5:15724860...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PFAM	PF00646	F-box	coord: 4..41 score: 0.0
IPR001810	F-box domain, cyclin-like	PROFILE	PS50181	FBOX	coord: 1..43 score: 8
IPR022364	F-box domain, Skp2-like	SUPERFAMILY	81383	F-box domain	coord: 5..99 score: 3.2
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 5..74 score: 4.8
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 1..41 score: 0.0
None	No IPR available	PANTHER	PTHR20995:SF2	gb def: MGC80471 protein	coord: 1..41 score: 0.0

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR395026 ID=GR395026; Name=GR395026; organism=Cicer arietinum; type=EST; length=741bp
GCGGGGACTAATCGTTTTATTTTCTCTCCATTTTGGTTTTTCTTTGACTG
TTAGAACAAGATAGATCCCTAATCTTGATCTAGGGTTTACTTCAATTCCA
CCACCAAACCAATCAACAACCTACGCCACACCTCCTCCTACCTTCAGATC
TCTATAATCCATAACTCCACTCTCATTCATCTTCTCAAACAAGCAACGTG
CTTGATCAATAATTCATTCAGATTTTGATTTGAACTCGGAGTAATCAATG
GAATCTGAAGAAGTTTTGAAGGCTGTTTTCCCTTTACTGGAGGGTGTTGA
CCTTGCTTCTTGTATGGCTGTATGTAAGCAGTGGAAAGAGATAGCTAAAG
ACGATTTCTTTTGGAAATGTTTGTGTGCCAAAAGATGGCCATCAATCTGC
AAACGACCTAATCCTCCTACGCTAACCTACTACAAATTGTACAAAACCTT
CCATAAACGCCAGCAACGCAGAACTCTTCTCCCACCAAGAATTTCTTTTG
ATGATTTGGAGTTTTTCATTGACATTTGGGCTGAAAATTTACTTCTCTTC
TCAGAAGTGGTACCTGGCTCTGTCCTGCAATCAGGTTTTAAAAGTCCATC
ATCTGGAGTATGTGACTTGCTCAAATTTCACCTTGAGGGTTCTGAATACA
AGATGACTTTTCCAGTTGAACCTAGGTTTACTATCCCTTCAGGACAAAAT
CAGAATGTTAGCGTCTCTGTGATGGTTGGGCGGAAGGATAC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR022364	F-box domain, Skp2-like

Search form