GR399871

EST Overview


Name	GR399871
Unique Name	GR399871
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	685

Libraries


Library Name	Type
LIBEST_024783 ICC4958 Slow drought stresses root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR399871 vs. TrEMBL
Match: B9RRN3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1648660 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.072e-9
Identity = 30/41 (73.17%), Postives = 30/41 (73.17%), Query Frame = 1

Query:   37 RWVHESDEVALTTEPCLSVGVNWMIGPRAAPSSPHSPLPKI 159
            RWV ES EVAL TEPCL VG NWMIGPR   S PHSP P I
Sbjct:   12 RWVDESAEVALPTEPCLPVGANWMIGPRTGLSFPHSPFPNI 52

[Close]

BLAST of GR399871 vs. TrEMBL
Match: B9RPV9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1542210 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.125e-7
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = -3

Query:   12 QFTPTDRHGSVVKATSSLSCTHRTAALSGLP 104
            QFTPTDRHGSVVKATSSLSCT+RT ALSG+P
Sbjct:   57 QFTPTDRHGSVVKATSSLSCTYRTIALSGVP 87

The following BLAST results are available for this feature:

BLAST of GR399871 vs. TrEMBL

BLAST of GR399871 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
B9RRN3_RICCO	2.072e-9	73.17	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9RPV9_RICCO	1.125e-7	90.32	Putative uncharacterized protein OS=Ricinus commun...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 13..30 score
None	No IPR available	SEG	seg	seg	coord: 32..47 score
None	No IPR available	SEG	seg	seg	coord: 6..18 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR399871 ID=GR399871; Name=GR399871; organism=Cicer arietinum; type=EST; length=685bp
ATCGGTCCCTAAGGAAGCCCCGAAAGGGCTGCCGTCCGATGGGTACACGA
AAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGTGA
ATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTCTC
CCTAAGATTAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCG
GTCGCCCTACGCGACTGGCGCTTCAAAAGGTAATTTACTTGCTTACTCGT
TAGAGTAGGGGTCGCGAAAGAACANAACGTACCGCCCTGTCATATTTGCG
AATCTGTTTAAAGTCTAGACTGTTTGTAATAGCATCAGTGTATATTCTTT
CTAGATAATATTTTTGTAATATTAAGGTATTATTTACTTGTGTTAATAAC
TTTATCTCTAATATTTCTGTATAAATATTTTAATTATTCTATTATTTTTT
TATCATATTTTTATTTAATTAGTTATTTTTTATAATCATCATACGTATTT
AACTTAAATTATATTATAAATTCTTATGTTATATCAAATCTTATATTAAG
TATATTTTTCTATACATTTCTTAAGGTATATATTATTATTATTTTTTATA
TTATTAAATTAACACATTATATTATATTTCTTATATTAATTACACTTTAT
TGATTTTTTAATACTTTCTATGAAATTTTTTTTAA

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