GR403990
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR403990 vs. TrEMBL
Match: B9SY46_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0986930 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.780e-8 Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 PRGL RLF T A AR+ AEPNTNLFVSGLSKRTTTE L++ F KFG Sbjct: 15 PRGLLRLFSTTTTPSDLSIFSSQANT--APSAREQAEPNTNLFVSGLSKRTTTEGLKQAFSKFG 76
BLAST of GR403990 vs. TrEMBL
Match: Q9FIU6_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g54580 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 4.936e-8 Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 P GLRRLFC+N PAR AEP+TNLFVSGLSKRTT+E LR F +FG Sbjct: 21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80
BLAST of GR403990 vs. TrEMBL
Match: D7MUB5_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_918594 PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 4.936e-8 Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 P GLRRLFC+N PAR AEP+TNLFVSGLSKRTT+E LR F +FG Sbjct: 21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80
BLAST of GR403990 vs. TrEMBL
Match: A9PGS0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_663318 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.100e-7 Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 3 Query: 246 PARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 PAR+ AEPNTNLFVSGLSKRTTTE L+E F KFG Sbjct: 45 PAREQAEPNTNLFVSGLSKRTTTEGLQEAFSKFG 78
BLAST of GR403990 vs. TrEMBL
Match: A5B311_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024164 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 2.450e-7 Identity = 34/64 (53.12%), Postives = 37/64 (57.81%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 PR LRRLF T+ A PA AEP+TNLFVSGLSKRTT+E L E F KFG Sbjct: 10 PRSLRRLFSTSTFIPPPIT--------AATPATPPAEPSTNLFVSGLSKRTTSEGLHEAFSKFG 65
BLAST of GR403990 vs. TrEMBL
Match: B9I063_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823031 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 3.200e-7 Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 3 Query: 246 PARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 PAR+ AEPNTNLFVSGLSKRTT+E L+E F KFG Sbjct: 46 PAREQAEPNTNLFVSGLSKRTTSEGLQEAFSKFG 79
BLAST of GR403990 vs. TAIR peptide
Match: AT5G54580.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156) HSP 1 Score: 60.8474 bits (146), Expect = 1.911e-10 Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347 P GLRRLFC+N PAR AEP+TNLFVSGLSKRTT+E LR F +FG Sbjct: 21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80
BLAST of GR403990 vs. TAIR peptide
Match: AT2G07750.1 (| Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:3576483-3580396 FORWARD LENGTH=845) HSP 1 Score: 49.6766 bits (117), Expect = 4.406e-7 Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 3 Query: 156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTER 320 P GLRRLFC+N + PAR+ AEP+TNLF SGLSKR T+ER Sbjct: 21 PVGLRRLFCSNASRFSFL----------SPPARRQAEPSTNLFHSGLSKRITSER 65 The following BLAST results are available for this feature:
BLAST of GR403990 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 6
BLAST of GR403990 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR403990 ID=GR403990; Name=GR403990; organism=Cicer arietinum; type=EST; length=349bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|