GR403990

EST Overview
NameGR403990
Unique NameGR403990
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length349
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR403990 vs. TrEMBL
Match: B9SY46_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0986930 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.780e-8
Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            PRGL RLF T                  A  AR+ AEPNTNLFVSGLSKRTTTE L++ F KFG
Sbjct:   15 PRGLLRLFSTTTTPSDLSIFSSQANT--APSAREQAEPNTNLFVSGLSKRTTTEGLKQAFSKFG 76          
BLAST of GR403990 vs. TrEMBL
Match: Q9FIU6_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g54580 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.936e-8
Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            P GLRRLFC+N                   PAR  AEP+TNLFVSGLSKRTT+E LR  F +FG
Sbjct:   21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80          
BLAST of GR403990 vs. TrEMBL
Match: D7MUB5_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_918594 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.936e-8
Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            P GLRRLFC+N                   PAR  AEP+TNLFVSGLSKRTT+E LR  F +FG
Sbjct:   21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80          
BLAST of GR403990 vs. TrEMBL
Match: A9PGS0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_663318 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.100e-7
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 3
Query:  246 PARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            PAR+ AEPNTNLFVSGLSKRTTTE L+E F KFG
Sbjct:   45 PAREQAEPNTNLFVSGLSKRTTTEGLQEAFSKFG 78          
BLAST of GR403990 vs. TrEMBL
Match: A5B311_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024164 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.450e-7
Identity = 34/64 (53.12%), Postives = 37/64 (57.81%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            PR LRRLF T+                 A PA   AEP+TNLFVSGLSKRTT+E L E F KFG
Sbjct:   10 PRSLRRLFSTSTFIPPPIT--------AATPATPPAEPSTNLFVSGLSKRTTSEGLHEAFSKFG 65          
BLAST of GR403990 vs. TrEMBL
Match: B9I063_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823031 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.200e-7
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 3
Query:  246 PARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            PAR+ AEPNTNLFVSGLSKRTT+E L+E F KFG
Sbjct:   46 PAREQAEPNTNLFVSGLSKRTTSEGLQEAFSKFG 79          
BLAST of GR403990 vs. TAIR peptide
Match: AT5G54580.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156)

HSP 1 Score: 60.8474 bits (146), Expect = 1.911e-10
Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFG 347
            P GLRRLFC+N                   PAR  AEP+TNLFVSGLSKRTT+E LR  F +FG
Sbjct:   21 PVGLRRLFCSNASRFSFLSPQAE----SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFG 80          
BLAST of GR403990 vs. TAIR peptide
Match: AT2G07750.1 (| Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:3576483-3580396 FORWARD LENGTH=845)

HSP 1 Score: 49.6766 bits (117), Expect = 4.406e-7
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 3
Query:  156 PRGLRRLFCTNXXXXXXXXXXXXXXXXGAAPARQMAEPNTNLFVSGLSKRTTTER 320
            P GLRRLFC+N                 + PAR+ AEP+TNLF SGLSKR T+ER
Sbjct:   21 PVGLRRLFCSNASRFSFL----------SPPARRQAEPSTNLFHSGLSKRITSER 65          
The following BLAST results are available for this feature:
BLAST of GR403990 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
B9SY46_RICCO3.780e-854.69RNA binding protein, putative OS=Ricinus communis ... [more]
Q9FIU6_ARATH4.936e-853.13Putative uncharacterized protein OS=Arabidopsis th... [more]
D7MUB5_ARALY4.936e-853.13RNA recognition motif-containing protein OS=Arabid... [more]
A9PGS0_POPTR1.100e-782.35Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5B311_VITVI2.450e-753.13Putative uncharacterized protein OS=Vitis vinifera... [more]
B9I063_POPTR3.200e-779.41Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GR403990 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G54580.11.911e-1053.13| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
AT2G07750.14.406e-750.91| Symbols: | DEA(D/H)-box RNA helicase family pro... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 19..30
score: NAcoord: 43..52
score
NoneNo IPR availablePANTHERPTHR10432RNA-BINDING PROTEINcoord: 69..96
score: 6.2
NoneNo IPR availablePANTHERPTHR10432:SF32RNA-BINDING GLYCINE-RICH PROTEIN-RELATEDcoord: 69..96
score: 6.2
NoneNo IPR availableSEGsegsegcoord: 27..32
score: NAcoord: 44..59
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 31..96
score: 6.9
NoneNo IPR availableSEGsegsegcoord: 2..14
score: NAcoord: 34..49
score: NAcoord: 61..66
score
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 53..96
score: 2

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR403990 ID=GR403990; Name=GR403990; organism=Cicer arietinum; type=EST; length=349bp
GACAACACAAGTATTGTATTTAGCATTTTATATACAAAATCGCAGTAGAC
GATTTCTGATATTCTCCTTCATTGCTTCTCTTTCCACTCACCCAGGGTTT
TACTTTTACCTTAAACCCCATGGCTTTGACGATGAGGGCTGCAGCGGCGG
CGGCTCCCCGCGGTTTGCGCCGCCTTTTCTGCACTAACCCAACCTCTTCT
TCTCCCTCTTTCCCTTTCACTTCAACACCGCCTTCAGGAGCTGCTCCCGC
CCGACAGATGGCTGAGCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCA
AACGTACTACAACAGAGAGGCTGCGGGAAGAATTTCAAAAGTTTGGTGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf