GR404090

EST Overview


Name	GR404090
Unique Name	GR404090
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	344

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR404090 vs. TrEMBL
Match: D7UCJ9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027032001 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.511e-52
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSNTLS  TAPGLLDVLMAADKFEVASCMR+CSRLLRN++MTPESALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  107 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNTLSTSTAPGLLDVLMAADKFEVASCMRHCSRLLRNLSMTPESALLYLELPSSVLMAEAVQPLTDAAKQ 220

[Close]

BLAST of GR404090 vs. TrEMBL
Match: B9RE12_RICCO (Atpob1, putative OS=Ricinus communis GN=RCOM_1617290 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.246e-51
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN+LS  TAPGLLDVLMAADKFEVASCMRYCSR LRN++MTPESALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  155 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNSLSTNTAPGLLDVLMAADKFEVASCMRYCSRQLRNMSMTPESALLYLELPSSVLMAEAVQPLTDAAKQ 268

[Close]

BLAST of GR404090 vs. TrEMBL
Match: Q9M309_ARATH (Putative uncharacterized protein F2A19.200 OS=Arabidopsis thaliana GN=F2A19.200 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.184e-51
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN +S+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA AVQPLTDAAK+
Sbjct:  147 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQ 260

[Close]

BLAST of GR404090 vs. TrEMBL
Match: Q9FPW6_ARATH (At3g61600 OS=Arabidopsis thaliana GN=At3g61600 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.184e-51
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN +S+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA AVQPLTDAAK+
Sbjct:  163 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQ 276

[Close]

BLAST of GR404090 vs. TrEMBL
Match: D7LSC0_ARALY (BTB/POZ domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486647 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.184e-51
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN +S+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA AVQPLTDAAK+
Sbjct:  164 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQ 277

[Close]

BLAST of GR404090 vs. TrEMBL
Match: C5ICE0_NICBE (BTB/POZ protein (Fragment) OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.069e-50
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE R VTLRINASEEAALMELLNFMYSNTL+  TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA+AVQPLTD AK+
Sbjct:  158 LAAKSPFFYKLFSNGMRESEQRQVTLRINASEEAALMELLNFMYSNTLTTSTAPALLDVLMAADKFEVASCMRYCSRLLRNLPMTPESALLYLELPSSVLMAEAVQPLTDTAKQ 271

[Close]

BLAST of GR404090 vs. TrEMBL
Match: B9I8T4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_834770 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.235e-50
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMEL+NFMYSNTL+   AP LLDVLMAADKFEVASCMRYCSR LRN++MTPESALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  153 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELMNFMYSNTLTASQAPQLLDVLMAADKFEVASCMRYCSRQLRNLSMTPESALLYLELPSSVLMAEAVQPLTDAAKQ 266

[Close]

BLAST of GR404090 vs. TrEMBL
Match: Q8LG00_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.837e-50
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRI+A EE ALMELLNFMYSN+LS+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTP+SALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  146 LAAKSPFFYKLFSNGMRESEQRHVTLRISAQEEGALMELLNFMYSNSLSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPDSALLYLELPSSVLMAEAVQPLTDAAKQ 259

[Close]

BLAST of GR404090 vs. TrEMBL
Match: O82343_ARATH (Expressed protein OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 6.837e-50
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRI+A EE ALMELLNFMYSN+LS+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTP+SALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  161 LAAKSPFFYKLFSNGMRESEQRHVTLRISAQEEGALMELLNFMYSNSLSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPDSALLYLELPSSVLMAEAVQPLTDAAKQ 274

[Close]

BLAST of GR404090 vs. TrEMBL
Match: D7LDY0_ARALY (BTB/POZ domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483774 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.837e-50
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRI+A EE ALMELLNFMYSN+LS+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTP+SALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  161 LAAKSPFFYKLFSNGMRESEQRHVTLRISAQEEGALMELLNFMYSNSLSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPDSALLYLELPSSVLMAEAVQPLTDAAKQ 274

[Close]

BLAST of GR404090 vs. TAIR peptide
Match: AT3G61600.2 (| Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22798069 FORWARD LENGTH=561)

HSP 1 Score: 203.371 bits (516), Expect = 2.392e-53
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN +S+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA AVQPLTDAAK+
Sbjct:  163 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQ 276

[Close]

BLAST of GR404090 vs. TAIR peptide
Match: AT3G61600.1 (| Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22797953 FORWARD LENGTH=561)

HSP 1 Score: 203.371 bits (516), Expect = 2.392e-53
Identity = 104/114 (91.23%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRINASEEAALMELLNFMYSN +S+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTPESALLYLELPSSVLMA AVQPLTDAAK+
Sbjct:  163 LAAKSPFFYKLFSNGMRESEQRHVTLRINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMAKAVQPLTDAAKQ 276

[Close]

BLAST of GR404090 vs. TAIR peptide
Match: AT2G46260.1 (| Symbols: | BTB/POZ/Kelch-associated protein | chr2:18996111-18998463 FORWARD LENGTH=561)

HSP 1 Score: 199.904 bits (507), Expect = 2.644e-52
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGMRESE RHVTLRI+A EE ALMELLNFMYSN+LS+ TAP LLDVLMAADKFEVASCMRYCSRLLRN+ MTP+SALLYLELPSSVLMA+AVQPLTDAAK+
Sbjct:  161 LAAKSPFFYKLFSNGMRESEQRHVTLRISAQEEGALMELLNFMYSNSLSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPDSALLYLELPSSVLMAEAVQPLTDAAKQ 274

[Close]

BLAST of GR404090 vs. TAIR peptide
Match: AT4G01160.1 (| Symbols: | BTB/POZ/Kelch-associated protein | chr4:494976-497006 REVERSE LENGTH=505)

HSP 1 Score: 159.844 bits (403), Expect = 3.033e-40
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 3

Query:    3 LAAKSPFFYKLFSNGMRESELRHVTLRINASEEAALMELLNFMYSNTLSIKTAPGLLDVLMAADKFEVASCMRYCSRLLRNITMTPESALLYLELPSSVLMADAVQPLTDAAKR 344
            LAAKSPFFYKLFSNGM ESE + +TL+I+ASEE A+MELL FMYSN+LS+  +  LLDVLM ADKFEVASCM+YCS+LL  + MT ES+LL L+LPSS+LMAD+V+PLT+AA++
Sbjct:  107 LAAKSPFFYKLFSNGMLESEQKQMTLKIDASEETAVMELLKFMYSNSLSVTASSALLDVLMVADKFEVASCMKYCSQLLLKMPMTLESSLLLLDLPSSLLMADSVKPLTNAARQ 220

The following BLAST results are available for this feature:

BLAST of GR404090 vs. TrEMBL
BLAST of GR404090 vs. TAIR peptide

BLAST of GR404090 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7UCJ9_VITVI	2.511e-52	92.98	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RE12_RICCO	1.246e-51	92.11	Atpob1, putative OS=Ricinus communis GN=RCOM_16172...	[more]
Q9M309_ARATH	6.184e-51	91.23	Putative uncharacterized protein F2A19.200 OS=Arab...	[more]
Q9FPW6_ARATH	6.184e-51	91.23	At3g61600 OS=Arabidopsis thaliana GN=At3g61600 PE=...	[more]
D7LSC0_ARALY	6.184e-51	91.23	BTB/POZ domain-containing protein OS=Arabidopsis l...	[more]
C5ICE0_NICBE	3.069e-50	90.35	BTB/POZ protein (Fragment) OS=Nicotiana benthamian...	[more]
B9I8T4_POPTR	5.235e-50	89.47	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q8LG00_ARATH	6.837e-50	88.60	Putative uncharacterized protein OS=Arabidopsis th...	[more]
O82343_ARATH	6.837e-50	88.60	Expressed protein OS=Arabidopsis thaliana GN=At2g4...	[more]
D7LDY0_ARALY	6.837e-50	88.60	BTB/POZ domain-containing protein OS=Arabidopsis l...	[more]

BLAST of GR404090 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G61600.2	2.392e-53	91.23	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-prot...	[more]
AT3G61600.1	2.392e-53	91.23	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-prot...	[more]
AT2G46260.1	2.644e-52	88.60	\| Symbols: \| BTB/POZ/Kelch-associated protein \| c...	[more]
AT4G01160.1	3.033e-40	70.18	\| Symbols: \| BTB/POZ/Kelch-associated protein \| c...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000210	BTB/POZ-like	PROFILE	PS50097	BTB	coord: 1..52 score: 12
IPR011333	BTB/POZ fold	GENE3D	3.30.710.10	no description	coord: 1..79 score: 2.2
IPR011333	BTB/POZ fold	SUPERFAMILY	54695	POZ domain	coord: 1..81 score: 1.5
IPR013069	BTB/POZ	PFAM	PF00651	BTB	coord: 1..80 score: 1
IPR013089	Kelch-related	PANTHER	PTHR23230	KELCH-RELATED PROTEIN	coord: 1..114 score: 8
None	No IPR available	PANTHER	PTHR23230:SF37	ATPOB1	coord: 1..114 score: 8

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR404090 ID=GR404090; Name=GR404090; organism=Cicer arietinum; type=EST; length=344bp
TCTTGGCTGCAAAAAGCCCTTTCTTCTATAAGCTTTTCTCGAATGGGATG
AGGGAATCAGAGCTGAGACATGTCACCCTCAGAATTAATGCCTCTGAAGA
AGCTGCTCTCATGGAGCTACTTAATTTTATGTATAGTAATACATTGAGCA
TTAAGACAGCTCCTGGTTTGCTGGATGTCTTGATGGCTGCTGATAAATTT
GAAGTTGCTTCATGCATGAGATATTGTAGCCGGTTGCTGCGAAACATAAC
CATGACACCTGAATCTGCATTGCTTTATCTGGAGCTTCCTTCTAGTGTCT
TAATGGCAGATGCTGTCCAACCATTGACTGATGCAGCAAAGCGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000210	BTB/POZ_dom
IPR011333	SKP1/BTB/POZ_sf
IPR013069	BTB/POZ
IPR013089	Kelch-related

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