GR392884

EST Overview


Name	GR392884
Unique Name	GR392884
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	627

Libraries


Library Name	Type
LIBEST_024778 ICC1882 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR392884 vs. TrEMBL
Match: D7UAG4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_15.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00014672001 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.614e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = -2

Query:  414 SSPSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 572
            SSPSD +LRNAICEI KEVDFNT TFTDILK LA+QF+ D   +K+ IK +IQ
Sbjct:  429 SSPSDDELRNAICEILKEVDFNTATFTDILKQLARQFETDLTARKSSIKLIIQ 481

[Close]

BLAST of GR392884 vs. TrEMBL
Match: B9S9T4_RICCO (Transporter, putative OS=Ricinus communis GN=RCOM_0522080 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.012e-12
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD +LR+AICEI KEVDFNT TFTDILK LA+QF+ D  P+K+ IK +IQ
Sbjct:  654 PSDDELRDAICEILKEVDFNTATFTDILKQLARQFNTDLTPRKSSIKIIIQ 704

[Close]

BLAST of GR392884 vs. TrEMBL
Match: B9GFL9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_642304 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.012e-12
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = -2

Query:  414 SPSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 569
            +PSD +LR+AIC+I KEVDFNT TFTDILKLLA++F  D  P+K+ IK MIQ
Sbjct:  318 TPSDDELRDAICKILKEVDFNTATFTDILKLLARRFATDLTPRKSSIKLMIQ 369

[Close]

BLAST of GR392884 vs. TrEMBL
Match: B9I1A4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568583 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.976e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD +LR+AICEI K+VDF+T TFTDILKLLA+QFD D   +K+ IK +IQ
Sbjct:  546 PSDDELRDAICEILKKVDFDTATFTDILKLLARQFDTDLTTRKSSIKLVIQ 596

[Close]

BLAST of GR392884 vs. TrEMBL
Match: Q2PEY3_TRIPR (Putative uncharacterized protein (Fragment) OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.511e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = -2

Query:  414 SSPSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 572
            S PSD QLR  IC+IFK VDFNT TF D ++LL K+F+VD  P+KA IK +IQ
Sbjct:  510 SDPSDDQLRKGICDIFKVVDFNTATFKDTVELLGKRFNVDLTPRKASIKTIIQ 562

[Close]

BLAST of GR392884 vs. TrEMBL
Match: Q9SUA1_ARATH (Putative uncharacterized protein AT4g26630 OS=Arabidopsis thaliana GN=AT4g26630 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.083e-8
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD  L+NAI EI K VDF+T TFTDILK LAK+F  D  P+K+ IK +IQ
Sbjct:  677 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQ 727

[Close]

BLAST of GR392884 vs. TrEMBL
Match: Q8RWF6_ARATH (At4g26630 OS=Arabidopsis thaliana GN=At4g26630 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.083e-8
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD  L+NAI EI K VDF+T TFTDILK LAK+F  D  P+K+ IK +IQ
Sbjct:  316 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQ 366

[Close]

BLAST of GR392884 vs. TrEMBL
Match: D7MF76_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492144 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.083e-8
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD  L+NAI EI K VDF+T TFTDILK LAK+F  D  P+K+ IK +IQ
Sbjct:  662 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQ 712

[Close]

BLAST of GR392884 vs. TrEMBL
Match: Q84TZ6_ORYSJ (Putative uncharacterized protein OSJNBa0087M10.17 OS=Oryza sativa subsp. japonica GN=OSJNBa0087M10.17 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.483e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PS  +LR  I EI K+VDFNT TF+DILK L  ++ +D  P+K+ IK MIQ
Sbjct:  607 PSKDELRKTITEILKKVDFNTATFSDILKKLEDRYKIDLTPRKSAIKIMIQ 657

[Close]

BLAST of GR392884 vs. TrEMBL
Match: Q10H93_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=Os03g0596900 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.483e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PS  +LR  I EI K+VDFNT TF+DILK L  ++ +D  P+K+ IK MIQ
Sbjct:  616 PSKDELRKTITEILKKVDFNTATFSDILKKLEDRYKIDLTPRKSAIKIMIQ 666

[Close]

BLAST of GR392884 vs. TAIR peptide
Match: AT4G26630.2 (| Symbols: | DEK domain-containing chromatin associated protein | chr4:13430873-13434877 REVERSE LENGTH=763)

HSP 1 Score: 63.929 bits (154), Expect = 7.856e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD  L+NAI EI K VDF+T TFTDILK LAK+F  D  P+K+ IK +IQ
Sbjct:  677 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQ 727

[Close]

BLAST of GR392884 vs. TAIR peptide
Match: AT4G26630.1 (| Symbols: | DEK domain-containing chromatin associated protein | chr4:13430873-13434877 REVERSE LENGTH=763)

HSP 1 Score: 63.929 bits (154), Expect = 7.856e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD  L+NAI EI K VDF+T TFTDILK LAK+F  D  P+K+ IK +IQ
Sbjct:  677 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQ 727

[Close]

BLAST of GR392884 vs. TAIR peptide
Match: AT5G55660.1 (| Symbols: | DEK domain-containing chromatin associated protein | chr5:22539375-22543142 FORWARD LENGTH=778)

HSP 1 Score: 57.7658 bits (138), Expect = 5.630e-9
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = -2

Query:  414 PSDIQLRNAICEIFKEVDFNTTTFTDILKLLAKQFDVDFNPKKAFIKAMIQ 566
            PSD +L+ AI +I K VDFNT TFTDILK L  +F++    KK+ IK MIQ
Sbjct:  686 PSDEELKTAIIDILKGVDFNTATFTDILKRLDAKFNISLASKKSSIKRMIQ 736

The following BLAST results are available for this feature:

BLAST of GR392884 vs. TrEMBL
BLAST of GR392884 vs. TAIR peptide

BLAST of GR392884 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7UAG4_VITVI	1.614e-12	69.81	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9S9T4_RICCO	8.012e-12	68.63	Transporter, putative OS=Ricinus communis GN=RCOM_...	[more]
B9GFL9_POPTR	8.012e-12	67.31	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9I1A4_POPTR	3.976e-11	66.67	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q2PEY3_TRIPR	1.511e-10	62.26	Putative uncharacterized protein (Fragment) OS=Tri...	[more]
Q9SUA1_ARATH	1.083e-8	62.75	Putative uncharacterized protein AT4g26630 OS=Arab...	[more]
Q8RWF6_ARATH	1.083e-8	62.75	At4g26630 OS=Arabidopsis thaliana GN=At4g26630 PE=...	[more]
D7MF76_ARALY	1.083e-8	62.75	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q84TZ6_ORYSJ	3.483e-7	54.90	Putative uncharacterized protein OSJNBa0087M10.17 ...	[more]
Q10H93_ORYSJ	3.483e-7	54.90	Expressed protein OS=Oryza sativa subsp. japonica ...	[more]

BLAST of GR392884 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G26630.2	7.856e-11	62.75	\| Symbols: \| DEK domain-containing chromatin asso...	[more]
AT4G26630.1	7.856e-11	62.75	\| Symbols: \| DEK domain-containing chromatin asso...	[more]
AT5G55660.1	5.630e-9	56.86	\| Symbols: \| DEK domain-containing chromatin asso...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 22..75 score: 2.3
None	No IPR available	PANTHER	PTHR13468	DEK PROTEIN	coord: 21..101 score: 4.8
None	No IPR available	SEG	seg	seg	coord: 2..18 score: NAcoord: 72..92 score
None	No IPR available	SUPERFAMILY	109715	DEK C-terminal domain	coord: 10..78 score: 7.9

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR392884 ID=GR392884; Name=GR392884; organism=Cicer arietinum; type=EST; length=627bp
AACACACAACAATACAAAGTTACAATATGCATAAAAAGGTGTCAACTTCA
AGGTTAAATATTTATTAAATAAACAGATTGTTGAATCTAAAAAAAAGCCT
AAAAATTATGTTGTGATGTGTACACAATAAACTACATGCTGGCAAACAAC
TGCACTAAATTATAACAAAACACTAGTTTGTTATCTTCAAAATGGAAGGA
TGCTATGAATAAAATACATCCACTTTTACACAAATTTAAAGTGTACATGA
AAAACGTAACTGAGGGTAAAGTATGCATTGCTAAACCTATCACCAATCAA
AAATGTCTAATCCACAGTTAGACTTCAGCCTCCTGGCCAGTGGACCGGGC
CTCAGTCTCCTCTTCTTCCTCGTCTTCATCATCTGCTTCATCGGCTAGTT
TTGTCAGCTCTTCCTGAATCATGGCCTTAATAAATGCCTTCTTCGGGTTG
AAATCCACATCAAATTGTTTAGCAAGTAGCTTCAAAATGTCAGTAAATGT
GGTCGTATTGAAGTCAACTTCTTTAAAAATTTCACATATTGCATTGCGCA
ACTGAATATCACTGGGGCTTGACTTCTCTTTCTTCTTCCCTTTTCCCTTA
ATAACCTTTTCAGTTTTCTCTTTGGCG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR014876	DEK_C

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