GR397398

EST Overview
NameGR397398
Unique NameGR397398
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length348
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR397398 vs. TrEMBL
Match: C6TET3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.801e-18
Identity = 49/78 (62.82%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 DLQHIAQVIAINMVIGLSSNXXXXXXXXXXXXXXXXXXXXXXPAWKHESTSIDGRRLFIDSAPMYNLFKITRVPKQWK 234
            DLQHIAQVIA+NMVIGL S                       PAWKHESTS DGRRLFID+APMY LFKI RVPKQWK
Sbjct:  265 DLQHIAQVIALNMVIGLLSTGIDNWGHLGGLVGGVAASWFIGPAWKHESTSSDGRRLFIDTAPMYKLFKIKRVPKQWK 342          
BLAST of GR397398 vs. TrEMBL
Match: D7T014_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_34.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022970001 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.098e-7
Identity = 31/73 (42.47%), Postives = 38/73 (52.05%), Query Frame = 1
Query:    4 LQHIAQVIAINMVIGLSSNXXXXXXXXXXXXXXXXXXXXXXPAWKHESTSIDGRRLFIDSAPMYNLFKITRVP 222
            LQHIA+VI +NMVIG  S                       PAWK+ES S DGRR+F D AP+++L    R P
Sbjct:  258 LQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESLSNDGRRVFADRAPIFHLVNRRRKP 330          
BLAST of GR397398 vs. TrEMBL
Match: A5BYB6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008789 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.098e-7
Identity = 31/73 (42.47%), Postives = 38/73 (52.05%), Query Frame = 1
Query:    4 LQHIAQVIAINMVIGLSSNXXXXXXXXXXXXXXXXXXXXXXPAWKHESTSIDGRRLFIDSAPMYNLFKITRVP 222
            LQHIA+VI +NMVIG  S                       PAWK+ES S DGRR+F D AP+++L    R P
Sbjct:  174 LQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESLSNDGRRVFADRAPIFHLVNRRRKP 246          
BLAST of GR397398 vs. TAIR peptide
Match: AT1G25290.2 (| Symbols: RBL10 | RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=336)

HSP 1 Score: 51.2174 bits (121), Expect = 1.510e-7
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 1
Query:    1 DLQHIAQVIAINMVIGLSSNXXXXXXXXXXXXXXXXXXXXXXPAWKHESTSIDGRRLFIDSAPM 192
            DL  IAQ+IA+NM +GL S                       P WK+E T+ DGRR+F+DSAP+
Sbjct:  260 DLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDSAPI 323          
BLAST of GR397398 vs. TAIR peptide
Match: AT1G25290.1 (| Symbols: ATRBL10, RBL10 | RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=343)

HSP 1 Score: 51.2174 bits (121), Expect = 1.510e-7
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 1
Query:    1 DLQHIAQVIAINMVIGLSSNXXXXXXXXXXXXXXXXXXXXXXPAWKHESTSIDGRRLFIDSAPM 192
            DL  IAQ+IA+NM +GL S                       P WK+E T+ DGRR+F+DSAP+
Sbjct:  267 DLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDSAPI 330          
The following BLAST results are available for this feature:
BLAST of GR397398 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C6TET3_SOYBN1.801e-1862.82Putative uncharacterized protein OS=Glycine max PE... [more]
D7T014_VITVI7.098e-742.47Whole genome shotgun sequence of line PN40024, sca... [more]
A5BYB6_VITVI7.098e-742.47Putative uncharacterized protein OS=Vitis vinifera... [more]
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BLAST of GR397398 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G25290.21.510e-740.63| Symbols: RBL10 | RHOMBOID-like protein 10 | chr1... [more]
AT1G25290.11.510e-740.63| Symbols: ATRBL10, RBL10 | RHOMBOID-like protein ... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 4..43
score: 1.2
NoneNo IPR availableGENE3D1.20.1540.10no descriptioncoord: 8..41
score: 0.0
NoneNo IPR availableSEGsegsegcoord: 21..42
score
NoneNo IPR availableSEGsegsegcoord: 73..83
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR397398 ID=GR397398; Name=GR397398; organism=Cicer arietinum; type=EST; length=348bp
GATCTGCAGCACATTGCACAAGTAATTGCCATCAATATGGTTATTGGTTT
ATCATCAAATGGCATTGACAACGGGGGACACTTAGGAGGTTTGATTGGTG
GAATTGCTGCGTCATGGCTTATTGGACCTGCATGGAAACATGAATCCACC
TCTATAGATGGAAGAAGACTTTTCATTGACAGTGCACCAATGTATAATCT
CTTCAAGATTACAAGAGTACCTAAGCAATGGAAATAGAAACATTTCATTG
TTGTATTGCGTATTACAAATAGTTGCTCATTGTGTTTATTTGTATAATGA
TACAGTGTTGTAAGTTTCCCTTAATAAAACACTTAGATGGTGGTTTCT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom