GR399936

EST Overview


Name	GR399936
Unique Name	GR399936
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	523

Libraries


Library Name	Type
LIBEST_024783 ICC4958 Slow drought stresses root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR399936 vs. SwissProt
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.442e-36
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELW+VS+GR+APFHGTF +YKK+L
Sbjct:  633 FAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLL 711

[Close]

BLAST of GR399936 vs. SwissProt
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.317e-17
Identity = 36/76 (47.37%), Postives = 60/76 (78.95%), Query Frame = 3

Query:    6 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIV-SEGRVAPFHGTFSEYK 230
            A++ + +PHI+LLDEP+NHLD+DA+EAL +G+  F GG++++SH++HLI+   E++W+V  +G +  + GTF +YK
Sbjct: 1053 AELAWAEPHILLLDEPTNHLDIDAIEALAEGINAFTGGVVLISHNQHLINLIAEQIWVVKKDGTIYLYPGTFMDYK 1128

[Close]

BLAST of GR399936 vs. SwissProt
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.790e-16
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE-----LWIVSEGRVAPFHGTFSEYKKIL 239
            F  I+  KPHI+LLDEP+NHLD+ +++AL   L  F GG+++VSHD  LIS    E     +W+V +G V  F GTF EYK+ L
Sbjct:  630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713

[Close]

BLAST of GR399936 vs. SwissProt
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.105e-15
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYK 230
            FA +    PHI++LDEPSNHLD   ++AL++ L  F GG+LMVSHD  +I    +E+W+  +G V  F GT  +Y+
Sbjct:  661 FAALCLNNPHILVLDEPSNHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVKRFEGTIYDYR 736

[Close]

BLAST of GR399936 vs. SwissProt
Match: YHES_ECOLI (Uncharacterized ABC transporter ATP-binding protein yheS OS=Escherichia coli (strain K12) GN=yheS PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.296e-15
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 3

Query:    6 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            A I +++P+++LLDEP+NHLDLD  +AL + L+ F+G +++VSHD HL+  + ++L++V + +V PF G   +Y++ L
Sbjct:  442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWL 519

[Close]

BLAST of GR399936 vs. SwissProt
Match: YHES_ECO57 (Uncharacterized ABC transporter ATP-binding protein yheS OS=Escherichia coli O157:H7 GN=yheS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.296e-15
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 3

Query:    6 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            A I +++P+++LLDEP+NHLDLD  +AL + L+ F+G +++VSHD HL+  + ++L++V + +V PF G   +Y++ L
Sbjct:  442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWL 519

[Close]

BLAST of GR399936 vs. SwissProt
Match: Y658_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI_0658 OS=Haemophilus influenzae GN=HI_0658 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.916e-15
Identity = 35/78 (44.87%), Postives = 57/78 (73.08%), Query Frame = 3

Query:    6 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            A I +++P+++LLDEP+NHLDLD  +AL + LV ++G +++VSHD HL+  +VEE ++V + +V  F G   +Y+K L
Sbjct:  446 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHDKKVEEFKGDLEDYQKWL 523

HSP 2 Score: 53.5286 bits (127), Expect = 6.932e-7
Identity = 24/66 (36.36%), Postives = 43/66 (65.15%), Query Frame = 3

Query:   33 IILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYK 230
            ++LLDEP+NHLDLDAV  L + LV +QG ++++SHD   +   V ++  +   ++  + G +S ++
Sbjct:  170 LLLLDEPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFE 235

[Close]

BLAST of GR399936 vs. SwissProt
Match: YJQ1_SCHPO (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.541e-14
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FA +   +PHI+LLDEP+N LD+D ++AL   L  F GG++ ++HD  LI    EE+WIV  G V  F G   +YK +L
Sbjct:  723 FAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAEEIWIVQNGTVKEFDGEIRDYKMML 801

[Close]

BLAST of GR399936 vs. SwissProt
Match: ABCF3_MOUSE (ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.012e-14
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FA++T   P+  +LDEP+NHLD++ +EAL Q L  F+GG+++VSHDE  I    +ELW+   G V    G F +Y+ +L
Sbjct:  621 FAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFIRLVCKELWVCENGSVTRVEGGFDQYRALL 699

[Close]

BLAST of GR399936 vs. SwissProt
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.855e-14
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKK 233
            FA +  + PHI++LDEP+NHLD+++++AL + +  FQGG+++VSHD   +  +   +W      V+ F GT S+YKK
Sbjct:  647 FACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCTSIWQCDHNVVSKFDGTISQYKK 723

[Close]

BLAST of GR399936 vs. TrEMBL
Match: D7TVM3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019609001 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.715e-36
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG+LMVSHDEHLISGSVEELW+VSEG+V+PFHGTF +YKKIL
Sbjct:  635 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVEELWVVSEGKVSPFHGTFHDYKKIL 713

[Close]

BLAST of GR399936 vs. TrEMBL
Match: B9RYQ3_RICCO (ATP-dependent transporter, putative OS=Ricinus communis GN=RCOM_1312550 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.715e-36
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW+VSEGR  PFHGTF +YKKIL
Sbjct:  302 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRATPFHGTFQDYKKIL 380

[Close]

BLAST of GR399936 vs. TrEMBL
Match: B9GL16_POPTR (ABC transporter family protein OS=Populus trichocarpa GN=POPTRDRAFT_815018 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.081e-35
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV+ELW+VS+GRV PFHGTF +YKKIL
Sbjct:  635 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVDELWVVSQGRVTPFHGTFLDYKKIL 713

[Close]

BLAST of GR399936 vs. TrEMBL
Match: D7KS83_ARALY (ATGCN3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474891 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.007e-35
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELW+VS+GR+APFHGTF +YKK+L
Sbjct:  633 FAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLL 711

[Close]

BLAST of GR399936 vs. TrEMBL
Match: B4FC32_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.747e-34
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELW+VSEGRV PF GTF +YKK+L
Sbjct:  185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLIFQGGVLMVSHDEHLITGSVDELWVVSEGRVTPFSGTFKDYKKML 263

[Close]

BLAST of GR399936 vs. TrEMBL
Match: Q6K7R5_ORYSJ (Putative non-transporter ABC protein AbcF1 OS=Oryza sativa subsp. japonica GN=P0452F04.18-2 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.012e-33
Identity = 68/79 (86.08%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELW+VSEGRV+PF GTF +YKK+L
Sbjct:  302 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLVFQGGVLMVSHDEHLITGSVDELWVVSEGRVSPFAGTFKDYKKML 380

[Close]

BLAST of GR399936 vs. TrEMBL
Match: C5XWM3_SORBI (Putative uncharacterized protein Sb04g037970 OS=Sorghum bicolor GN=Sb04g037970 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.012e-33
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELW+VSEGRV PF GTF +YKK+L
Sbjct:  641 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLVFQGGVLMVSHDEHLITGSVDELWVVSEGRVTPFSGTFKDYKKML 719

[Close]

BLAST of GR399936 vs. TrEMBL
Match: B9F4M2_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_08959 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.012e-33
Identity = 68/79 (86.08%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELW+VSEGRV+PF GTF +YKK+L
Sbjct:  642 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLVFQGGVLMVSHDEHLITGSVDELWVVSEGRVSPFAGTFKDYKKML 720

[Close]

BLAST of GR399936 vs. TrEMBL
Match: B8AF60_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09528 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.012e-33
Identity = 68/79 (86.08%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELW+VSEGRV+PF GTF +YKK+L
Sbjct:  628 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLVFQGGVLMVSHDEHLITGSVDELWVVSEGRVSPFAGTFKDYKKML 706

[Close]

BLAST of GR399936 vs. TrEMBL
Match: A9S4D8_PHYPA (ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 OS=Physcomitrella patens subsp. patens GN=ppabcf1 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.845e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITF KPHI+LLDEPSNHLDLDAVEALIQGL LFQGG+LMVSHDEHLISGSV+ELW VS+G+  PFHGTF+EYKK L
Sbjct:  646 FAKITFNKPHILLLDEPSNHLDLDAVEALIQGLALFQGGVLMVSHDEHLISGSVDELWCVSDGKATPFHGTFAEYKKTL 724

[Close]

BLAST of GR399936 vs. TAIR peptide
Match: AT1G64550.1 (| Symbols: ATGCN3, GCN3 | general control non-repressible 3 | chr1:23968850-23973369 FORWARD LENGTH=715)

HSP 1 Score: 150.214 bits (378), Expect = 6.011e-37
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELW+VS+GR+APFHGTF +YKK+L
Sbjct:  633 FAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLL 711

[Close]

BLAST of GR399936 vs. TAIR peptide
Match: AT3G54540.1 (| Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723)

HSP 1 Score: 83.9593 bits (206), Expect = 5.290e-17
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE-----LWIVSEGRVAPFHGTFSEYKKIL 239
            F  I+  KPHI+LLDEP+NHLD+ +++AL   L  F GG+++VSHD  LIS    E     +W+V +G V  F GTF EYK+ L
Sbjct:  630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713

[Close]

BLAST of GR399936 vs. TAIR peptide
Match: AT5G60790.1 (| Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595)

HSP 1 Score: 70.8626 bits (172), Expect = 4.634e-13
Identity = 28/79 (35.44%), Postives = 55/79 (69.62%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKIL 239
            FA + +K+P+++LLDEP+NHLD++ +++L + L  + GG+++VSHD  LI+    E+W+  +  +  ++G   ++K+ L
Sbjct:  509 FAWLAYKQPNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHL 587

[Close]

BLAST of GR399936 vs. TAIR peptide
Match: AT5G64840.1 (| Symbols: GCN5, ATGCN5 | general control non-repressible 5 | chr5:25916956-25919693 REVERSE LENGTH=692)

HSP 1 Score: 51.2174 bits (121), Expect = 3.800e-7
Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEY 227
            F K       +++LDEP+NHLD+ + E L + +  +QG ++ VSHD + I   V  +  V +G +  + G ++ Y
Sbjct:  554 FCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIVNRVIEVEDGCLEDYAGDYNYY 628

[Close]

BLAST of GR399936 vs. TAIR peptide
Match: AT5G09930.1 (| Symbols: ATGCN2, GCN2 | ABC transporter family protein | chr5:3097643-3100241 REVERSE LENGTH=678)

HSP 1 Score: 50.447 bits (119), Expect = 6.482e-7
Identity = 23/75 (30.67%), Postives = 43/75 (57.33%), Query Frame = 3

Query:    3 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEY 227
            F K   K   +++LDEP+NHLD+ + E L + +  ++G ++ VSHD + I   V  +  V +G +  + G ++ +
Sbjct:  540 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSHDRYFIKQIVNRVIEVRDGGLMDYAGDYNYF 614

The following BLAST results are available for this feature:

BLAST of GR399936 vs. SwissProt
BLAST of GR399936 vs. TrEMBL
BLAST of GR399936 vs. TAIR peptide

BLAST of GR399936 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
AB3F_ARATH	5.442e-36	87.34	ABC transporter F family member 3 OS=Arabidopsis t...	[more]
ABCF4_DICDI	3.317e-17	47.37	ABC transporter F family member 4 OS=Dictyostelium...	[more]
AB4F_ARATH	4.790e-16	48.81	ABC transporter F family member 4 OS=Arabidopsis t...	[more]
GCN20_YEAST	3.105e-15	46.05	Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20...	[more]
YHES_ECOLI	5.296e-15	42.31	Uncharacterized ABC transporter ATP-binding protei...	[more]
YHES_ECO57	5.296e-15	42.31	Uncharacterized ABC transporter ATP-binding protei...	[more]
Y658_HAEIN	6.916e-15	44.87	Uncharacterized ABC transporter ATP-binding protei...	[more]
YJQ1_SCHPO	1.541e-14	45.57	Uncharacterized ABC transporter ATP-binding protei...	[more]
ABCF3_MOUSE	2.012e-14	44.30	ATP-binding cassette sub-family F member 3 OS=Mus ...	[more]
YB89_SCHPO	5.855e-14	41.56	Uncharacterized ABC transporter ATP-binding protei...	[more]

BLAST of GR399936 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7TVM3_VITVI	3.715e-36	92.41	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RYQ3_RICCO	3.715e-36	93.67	ATP-dependent transporter, putative OS=Ricinus com...	[more]
B9GL16_POPTR	1.081e-35	92.41	ABC transporter family protein OS=Populus trichoca...	[more]
D7KS83_ARALY	7.007e-35	87.34	ATGCN3 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
B4FC32_MAIZE	7.747e-34	86.08	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
Q6K7R5_ORYSJ	1.012e-33	86.08	Putative non-transporter ABC protein AbcF1 OS=Oryz...	[more]
C5XWM3_SORBI	1.012e-33	86.08	Putative uncharacterized protein Sb04g037970 OS=So...	[more]
B9F4M2_ORYSJ	1.012e-33	86.08	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8AF60_ORYSI	1.012e-33	86.08	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A9S4D8_PHYPA	3.845e-33	84.81	ATP-binding cassette transporter, subfamily F, mem...	[more]

BLAST of GR399936 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G64550.1	6.011e-37	87.34	\| Symbols: ATGCN3, GCN3 \| general control non-repr...	[more]
AT3G54540.1	5.290e-17	48.81	\| Symbols: ATGCN4, GCN4 \| general control non-repr...	[more]
AT5G60790.1	4.634e-13	35.44	\| Symbols: ATGCN1, GCN1 \| ABC transporter family p...	[more]
AT5G64840.1	3.800e-7	32.00	\| Symbols: GCN5, ATGCN5 \| general control non-repr...	[more]
AT5G09930.1	6.482e-7	30.67	\| Symbols: ATGCN2, GCN2 \| ABC transporter family p...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007406	Prokaryotic chromosome segregation/condensation protein MukB, N-terminal	GENE3D	3.40.1140.10	no description	coord: 5..77 score: 9.3
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 1..81 score: 4.7
None	No IPR available	PANTHER	PTHR19211:SF18	ATP-DEPENDENT TRANSPORTER (ABCF1) PLANT	coord: 1..81 score: 4.7
None	No IPR available	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..65 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 20..32 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR399936 ID=GR399936; Name=GR399936; organism=Cicer arietinum; type=EST; length=523bp
CCTTTGCAAAGATAACATTTAAGAAGCCACACATAATATTGCTTGATGAG
CCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCT
TGTGTTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCA
TATCTGGAAGCGTGGAGGAGCTATGGATTGTATCCGAGGGAAGAGTGGCA
CCATTCCATGGCACCTTCTCAGAGTATAAGAAGATACTACATTCATCTTA
GGAAAGTGAGTTGTAGTTAACATACTTTTTGGATAGAGAATACCCTTCTA
TGGTAACGGGTAGAAGATATATGGATGACATTTTTCTGTTGCTCATCTTA
CCCGACCTAGATGGTAACATACATTTTTGCAATTTATCAAAACTATGTAT
AAGTAATAGACAACAATAATTGGCAGTCCACAGTGTATCTTTTTTTTGTT
GTAACTTACACCGTTAGATTTGAAGTCCTATCATATCTAATTGTGCATTA
GTATCATTTTTTTTCCGAAAAAN

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007059	chromosome segregation
GO:0030261	chromosome condensation

Vocabulary: **Cellular Component**
Term	Definition
GO:0009295	nucleoid

Vocabulary: **INTERPRO**
Term	Definition
IPR007406	Prokaryotic chromosome segregation/condensation protein MukB, N-terminal

Search form