GR407084

EST Overview
NameGR407084
Unique NameGR407084
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length180
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
[Close]
BLAST of GR407084 vs. TrEMBL
Match: B9RZ59_RICCO (RNA polymerase-associated protein RTF1, putative OS=Ricinus communis GN=RCOM_0935630 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.587e-20
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRLDPTERDDD GSQ+E D DDG S REGDSSD S++G+DLYK+EDDRRKL
Sbjct:   59 PSGSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKL 118
[Close]
BLAST of GR407084 vs. TrEMBL
Match: B9HYK9_POPTR (PAF1 complex component OS=Populus trichocarpa GN=PAFD902 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.395e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ERDD+ GSQEE D DDG S REG+SSD S+IGDDLYKDEDDR+KL
Sbjct:   60 PSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKL 119
[Close]
BLAST of GR407084 vs. TrEMBL
Match: B9H268_POPTR (PAF1 complex component OS=Populus trichocarpa GN=PAFD901 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.017e-16
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ERD + GSQ+E D D G S REG SSDES+IGDDLYKDEDDR+KL
Sbjct:   60 PSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKL 119
[Close]
BLAST of GR407084 vs. TrEMBL
Match: Q9C950_ARATH (Putative uncharacterized protein T7P1.17 OS=Arabidopsis thaliana GN=At1g61040 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.170e-10
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ER+D   ++ E    DG S REGDSS+ES+ GDDLYK+E+DR+KL
Sbjct:   56 PSGSQVPLKKRLE-AEREDR-AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113
[Close]
BLAST of GR407084 vs. TrEMBL
Match: Q8RWR3_ARATH (At1g61040/T7P1_17 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.170e-10
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ER+D   ++ E    DG S REGDSS+ES+ GDDLYK+E+DR+KL
Sbjct:   56 PSGSQVPLKKRLE-AEREDR-AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113
[Close]
BLAST of GR407084 vs. TrEMBL
Match: D7KW58_ARALY (At1g61040/T7P1_17 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475221 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.170e-10
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ER+D   ++ E    DG S REGDSS+ES+ GDDLYK+E+DR+KL
Sbjct:   56 PSGSQVPLKKRLE-AEREDR-AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113
[Close]
BLAST of GR407084 vs. TAIR peptide
Match: AT1G61040.1 (| Symbols: VIP5 | plus-3 domain-containing protein | chr1:22483817-22485748 FORWARD LENGTH=643)

HSP 1 Score: 68.1662 bits (165), Expect = 1.206e-12
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = -1 
Query:    1 PFGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSAREGDSSDESNIGDDLYKDEDDRRKL 180
            P GSQVPLKKRL+  ER+D   ++ E    DG S REGDSS+ES+ GDDLYK+E+DR+KL
Sbjct:   56 PSGSQVPLKKRLE-AEREDR-AARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113
The following BLAST results are available for this feature:
BLAST of GR407084 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
B9RZ59_RICCO2.587e-2080.00RNA polymerase-associated protein RTF1, putative O... [more]
B9HYK9_POPTR5.395e-1876.67PAF1 complex component OS=Populus trichocarpa GN=P... [more]
B9H268_POPTR1.017e-1673.33PAF1 complex component OS=Populus trichocarpa GN=P... [more]
Q9C950_ARATH3.170e-1061.67Putative uncharacterized protein T7P1.17 OS=Arabid... [more]
Q8RWR3_ARATH3.170e-1061.67At1g61040/T7P1_17 OS=Arabidopsis thaliana PE=2 SV=... [more]
D7KW58_ARALY3.170e-1061.67At1g61040/T7P1_17 OS=Arabidopsis lyrata subsp. lyr... [more]
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BLAST of GR407084 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G61040.11.206e-1261.67| Symbols: VIP5 | plus-3 domain-containing protein... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..19
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR407084 ID=GR407084; Name=GR407084; organism=Cicer arietinum; type=EST; length=180bp
AAGCTTCCTCCTGTCATCTTCATCTTTATAGAGATCATCACCGATATTTG
ATTCATCACTGCTATCGCCTTCACGGGCACTTCGCCCATCATCATCGTCT
GCTTCTTCCTGACTGCCTAAATCGTCGTCTCTTTCTGTTGGATCTAATCT
CTTCTTCAAAGGAACTTGTGATCCAAATGG
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