GR408434

EST Overview


Name	GR408434
Unique Name	GR408434
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	514

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR408434 vs. TrEMBL
Match: B9I3P9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_662137 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.121e-24
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            G+PAPAL GS DIR LNM DFK AH+QVCASVSSESVNMTELLQWNELYGEGGSR KKALSYFM
Sbjct:  380 GKPAPALSGSADIRPLNMVDFKDAHEQVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 443

[Close]

BLAST of GR408434 vs. TrEMBL
Match: B9RAH6_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1506560 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.076e-24
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            G+PAPAL GS DIR LNM+DF++AH++VCASVSSESVNMTELLQWNELYGEGGSR KKALSYFM
Sbjct: 1177 GKPAPALSGSGDIRPLNMDDFRYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1240

[Close]

BLAST of GR408434 vs. TrEMBL
Match: D7SGX0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008524001 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.186e-23
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GS DIR LN++DFK+AH++VCASVSSESVNMTEL+QWNELYGEGGSR KKALSYFM
Sbjct: 1153 GRPPPALSGSADIRPLNIDDFKYAHERVCASVSSESVNMTELIQWNELYGEGGSRRKKALSYFM 1216

[Close]

BLAST of GR408434 vs. TrEMBL
Match: A5AZC6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007346 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.186e-23
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GS DIR LN++DFK+AH++VCASVSSESVNMTEL+QWNELYGEGGSR KKALSYFM
Sbjct:  568 GRPPPALSGSADIRPLNIDDFKYAHERVCASVSSESVNMTELIQWNELYGEGGSRRKKALSYFM 631

[Close]

BLAST of GR408434 vs. TrEMBL
Match: B9IF94_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_666645 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.686e-23
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            G+PAPAL  S D+R LNM DFK AH++VCASVSSESVNMTELLQWNELYGEGGSR KKALSYFM
Sbjct:  383 GKPAPALSRSSDVRPLNMVDFKDAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 446

[Close]

BLAST of GR408434 vs. TrEMBL
Match: Q2R029_ORYSJ (AAA-type ATPase family protein, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g43970 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.236e-22
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GSEDIR L ++DFK AH+QVCASVSS+S NM ELLQWN+LYGEGGSR KKALSYFM
Sbjct:  629 GRPEPALYGSEDIRPLTLDDFKSAHEQVCASVSSDSANMNELLQWNDLYGEGGSRKKKALSYFM 692

[Close]

BLAST of GR408434 vs. TrEMBL
Match: Q0IR92_ORYSJ (Os11g0661400 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os11g0661400 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.236e-22
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GSEDIR L ++DFK AH+QVCASVSS+S NM ELLQWN+LYGEGGSR KKALSYFM
Sbjct:  178 GRPEPALYGSEDIRPLTLDDFKSAHEQVCASVSSDSANMNELLQWNDLYGEGGSRKKKALSYFM 241

[Close]

BLAST of GR408434 vs. TrEMBL
Match: C5Y7H4_SORBI (Putative uncharacterized protein Sb05g026170 OS=Sorghum bicolor GN=Sb05g026170 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.236e-22
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GSEDIR L+++DFK AH+QVCASVSS+S NM ELLQWN+LYGEGGSR KKALSYFM
Sbjct: 1142 GRPEPALYGSEDIRPLSIDDFKSAHEQVCASVSSDSANMNELLQWNDLYGEGGSRKKKALSYFM 1205

[Close]

BLAST of GR408434 vs. TrEMBL
Match: B9G8Q8_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_34736 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.236e-22
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GSEDIR L ++DFK AH+QVCASVSS+S NM ELLQWN+LYGEGGSR KKALSYFM
Sbjct: 1143 GRPEPALYGSEDIRPLTLDDFKSAHEQVCASVSSDSANMNELLQWNDLYGEGGSRKKKALSYFM 1206

[Close]

BLAST of GR408434 vs. TrEMBL
Match: B8BLP9_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36923 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.236e-22
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GRP PAL GSEDIR L ++DFK AH+QVCASVSS+S NM ELLQWN+LYGEGGSR KKALSYFM
Sbjct: 1128 GRPEPALYGSEDIRPLTLDDFKSAHEQVCASVSSDSANMNELLQWNDLYGEGGSRKKKALSYFM 1191

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT4G02480.1 (| Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265)

HSP 1 Score: 93.5893 bits (231), Expect = 6.510e-20
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 1

Query:   52 RPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            RP P L    D+RSL M DFK AH QVCASVSS+S NM EL QWNELYGEGGSR K +LSYFM
Sbjct: 1203 RPTPPLYSCTDVRSLTMNDFKAAHDQVCASVSSDSSNMNELQQWNELYGEGGSRKKTSLSYFM 1265

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G02890.2 (| Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1218)

HSP 1 Score: 91.2781 bits (225), Expect = 3.231e-19
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1

Query:   52 RPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            R  P L  S D+R LNM DFK AH QVCASV+S+S NM EL QWNELYGEGGSR K +LSYFM
Sbjct: 1156 RAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSYFM 1218

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G02890.1 (| Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1246)

HSP 1 Score: 91.2781 bits (225), Expect = 3.231e-19
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1

Query:   52 RPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            R  P L  S D+R LNM DFK AH QVCASV+S+S NM EL QWNELYGEGGSR K +LSYFM
Sbjct: 1184 RAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSYFM 1246

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT4G24860.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12801580-12808190 REVERSE LENGTH=1122)

HSP 1 Score: 76.2554 bits (186), Expect = 1.076e-14
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYF 237
            G+  P L GS D+R+LN+EDF+ AH+ V ASVSSES  MT L QWN+L+GEGGS  +++ S++
Sbjct: 1059 GKVPPPLSGSSDLRALNVEDFRDAHKWVSASVSSESATMTALQQWNKLHGEGGSGKQQSFSFY 1121

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G62130.1 (| Symbols: | AAA-type ATPase family protein | chr1:22962365-22968920 REVERSE LENGTH=1043)

HSP 1 Score: 70.8626 bits (172), Expect = 4.519e-13
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1

Query:   49 GRPAPALRGSEDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            GR  PA  G  D+R L MEDF++A + V  S+SS+SVNMT L QWNE YGEGGSR  ++ S ++
Sbjct:  980 GRVPPAGSGGSDLRVLKMEDFRNALELVSMSISSKSVNMTALRQWNEDYGEGGSRRNESFSQYV 1043

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G64110.3 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:23796887-23801255 REVERSE LENGTH=827)

HSP 1 Score: 67.781 bits (164), Expect = 3.825e-12
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1

Query:   61 PALRGSED---------IRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            P   G ED         +R LN +DFK A  QV AS ++E   M EL QWNELYGEGGSR K+ L+YF+
Sbjct:  759 PTKAGEEDEGKEERVITLRPLNRQDFKEAKNQVAASFAAEGAGMGELKQWNELYGEGGSRKKEQLTYFL 827

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G64110.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:23796887-23801240 REVERSE LENGTH=824)

HSP 1 Score: 67.781 bits (164), Expect = 3.825e-12
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1

Query:   61 PALRGSED---------IRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            P   G ED         +R LN +DFK A  QV AS ++E   M EL QWNELYGEGGSR K+ L+YF+
Sbjct:  756 PTKAGEEDEGKEERVITLRPLNRQDFKEAKNQVAASFAAEGAGMGELKQWNELYGEGGSRKKEQLTYFL 824

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT1G64110.2 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:23796887-23801255 REVERSE LENGTH=829)

HSP 1 Score: 67.781 bits (164), Expect = 3.825e-12
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1

Query:   61 PALRGSED---------IRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            P   G ED         +R LN +DFK A  QV AS ++E   M EL QWNELYGEGGSR K+ L+YF+
Sbjct:  761 PTKAGEEDEGKEERVITLRPLNRQDFKEAKNQVAASFAAEGAGMGELKQWNELYGEGGSRKKEQLTYFL 829

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT5G52882.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21434155-21438362 REVERSE LENGTH=829)

HSP 1 Score: 67.3958 bits (163), Expect = 4.996e-12
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   85 IRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            +R LNMED + A  QV AS +SE   M EL QWN+LYGEGGSR K+ L+YF+
Sbjct:  778 LRPLNMEDMRKAKTQVAASFASEGAGMNELKQWNDLYGEGGSRKKEQLTYFL 829

[Close]

BLAST of GR408434 vs. TAIR peptide
Match: AT4G28000.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13925456-13929280 FORWARD LENGTH=830)

HSP 1 Score: 66.2402 bits (160), Expect = 1.113e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   85 IRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 240
            +R L+MED K A  QV AS ++E   M EL QWN+LYGEGGSR K+ LSYF+
Sbjct:  779 LRPLSMEDMKVAKSQVAASFAAEGAGMNELKQWNDLYGEGGSRKKEQLSYFL 830

The following BLAST results are available for this feature:

BLAST of GR408434 vs. TrEMBL
BLAST of GR408434 vs. TAIR peptide

BLAST of GR408434 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9I3P9_POPTR	3.121e-24	87.50	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RAH6_RICCO	4.076e-24	84.38	ATP binding protein, putative OS=Ricinus communis ...	[more]
D7SGX0_VITVI	1.186e-23	82.81	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5AZC6_VITVI	1.186e-23	82.81	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9IF94_POPTR	7.686e-23	82.81	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q2R029_ORYSJ	2.236e-22	79.69	AAA-type ATPase family protein, putative, expresse...	[more]
Q0IR92_ORYSJ	2.236e-22	79.69	Os11g0661400 protein (Fragment) OS=Oryza sativa su...	[more]
C5Y7H4_SORBI	2.236e-22	79.69	Putative uncharacterized protein Sb05g026170 OS=So...	[more]
B9G8Q8_ORYSJ	2.236e-22	79.69	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BLP9_ORYSI	2.236e-22	79.69	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of GR408434 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT4G02480.1	6.510e-20	71.43	\| Symbols: \| AAA-type ATPase family protein \| chr...	[more]
AT1G02890.2	3.231e-19	69.84	\| Symbols: \| AAA-type ATPase family protein \| chr...	[more]
AT1G02890.1	3.231e-19	69.84	\| Symbols: \| AAA-type ATPase family protein \| chr...	[more]
AT4G24860.1	1.076e-14	55.56	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT1G62130.1	4.519e-13	54.69	\| Symbols: \| AAA-type ATPase family protein \| chr...	[more]
AT1G64110.3	3.825e-12	50.72	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT1G64110.1	3.825e-12	50.72	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT1G64110.2	3.825e-12	50.72	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT5G52882.1	4.996e-12	59.62	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT4G28000.1	1.113e-11	59.62	\| Symbols: \| P-loop containing nucleoside triphos...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23074	AAA ATPASE	coord: 1..67 score: 1.2
None	No IPR available	PANTHER	PTHR23074:SF20	AAA-FAMILY ATPASE	coord: 1..67 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 3..16 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR408434 ID=GR408434; Name=GR408434; organism=Cicer arietinum; type=EST; length=514bp
GAGATATTAGAAAAGGAAAAAAAGGAACTTGCTGCCGCTCTAGAAGAGGG
TAGACCTGCTCCTGCATTACGTGGAAGTGAAGATATCCGATCTTTAAACA
TGGAAGACTTCAAACATGCTCACCAACAGGTATGCGCAAGTGTTTCCTCT
GAATCGGTAAATATGACGGAGCTTTTACAATGGAATGAACTCTATGGTGA
AGGTGGTTCAAGAGTTAAAAAAGCACTCAGCTATTTCATGTGAGTTTCTC
CTTTGTACAAATATTCCCTTCATCGCTGCCTTCTTCCGGAGCCTGCGTAT
TTGTAGTTTTACTTGTCCATTGAGGCTTGCAGTGCAGGGCTTGCTGTTGA
GCCATTTCGTCTGTAAAATGAAATATAGGTTTTCTAAGTTATTTTTTGTT
ACCCGTGGGATGGTGGGTTTTGAAAGGAGTGTAAAGCTTTTGTGAAATTT
AGCAAGGCTCTGCTTCTTTTGTTTTGTTCCTTATCCCCTGGCCATCACCG
CATAAGATGTATTT

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