GR915945

EST Overview
NameGR915945
Unique NameGR915945
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length424
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
[Close]
BLAST of GR915945 vs. TAIR peptide
Match: AT3G45980.1 (| Symbols: H2B, HTB9 | Histone superfamily protein | chr3:16897492-16897944 REVERSE LENGTH=150)

HSP 1 Score: 50.8322 bits (120), Expect = 3.194e-7
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 2 
Query:   32 DNKPAGMEQDADKPAAIEQDANNKPAVER---NSTVGMHVDAVDKGKKTMKKRWTLKFDEYIYEVLKQVHPDIAISGKAL 262
            + KPA  +  A+KP   +  A   PA ++      +     A    KK MKK+    +  YI++VLKQVHPDI IS KA+
Sbjct:    6 EKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAM 85
[Close]
BLAST of GR915945 vs. TAIR peptide
Match: AT5G59910.1 (| Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150)

HSP 1 Score: 49.6766 bits (117), Expect = 7.115e-7
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 2 
Query:   32 DNKPAGMEQDADKPAAIEQDANNKPAVER---NSTVGMHVDAVDKGKKTMKKRWTLKFDEYIYEVLKQVHPDIAISGKAL 262
            + KPA  +  ++KP   +  A   PA ++      +     A    KK MKK+    +  YI++VLKQVHPDI IS KA+
Sbjct:    6 EKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAM 85
The following BLAST results are available for this feature:
BLAST of GR915945 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G45980.13.194e-737.50| Symbols: H2B, HTB9 | Histone superfamily protein... [more]
AT5G59910.17.115e-736.25| Symbols: HTB4 | Histone superfamily protein | ch... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 58..76
score: 1.3e-06coord: 77..93
score: 1.3
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 2..91
score: 3.3
IPR009072Histone-foldGENE3D1.10.20.10no descriptioncoord: 33..91
score: 8.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 39..91
score: 5.3
NoneNo IPR availablePANTHERPTHR23428:SF1HISTONE H2Bcoord: 2..91
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 82..91
score
NoneNo IPR availableSEGsegsegcoord: 17..28
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR915945 ID=GR915945; Name=GR915945; organism=Cicer arietinum; type=EST; length=424bp
TAGCGTGTCGCGGCCGAGGTAACTGGATGAAGATAACAAGCCCGCCGGGA
TGGAACAGGATGCAGATAAGCCCGCCGCGATTGAACAGGATGCAAATAAC
AAGCCTGCAGTGGAGAGGAATTCGACGGTGGGGATGCATGTAGATGCCGT
CGACAAAGGGAAGAAAACGATGAAGAAGCGGTGGACGTTGAAGTTCGATG
AATACATCTATGAGGTTCTGAAGCAGGTGCACCCTGATATTGCTATATCC
GGAAAGGCCTTGGATATGATGAACAATATCATAAACAAGATGATGTTGCT
ATAAAACCTACTACTAAACTAGTCACAACCTACACACGAAATTGATTTTG
TAATAACATTACAATTAGATTGACTGACTATTTAAAGATTTTGATATGAT
ACAAATGAGGTCAAGAGGACTTTT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR009072Histone-fold