GR397948

EST Overview


Name	GR397948
Unique Name	GR397948
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	559

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.260e-32
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD+YLD LQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+LEK D S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_ARATH (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.491e-32
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVD 278
            MI+PVRCFTCGKVIGNKWD+YL+ LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN++EK D
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.732e-28
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIP+RCFTCGKVIGNKW+SYL  LQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLLNY  LEK
Sbjct:    1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.366e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIPVRCFTCGK++GNKW++YL  LQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLLNY  LEK
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.366e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIPVRCFTCGK++GNKW++YL  LQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLLNY  LEK
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.366e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIPVRCFTCGK++GNKW++YL  LQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLLNY  LEK
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.366e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIPVRCFTCGK++GNKW++YL  LQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLLNY  LEK
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=rpb-10 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.418e-27
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIP+RCFTCGKVIG+KW++YL FLQ++Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY+ LEK
Sbjct:    1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_CAEBR (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis briggsae GN=rpb-10 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.418e-27
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEK 272
            MIIP+RCFTCGKVIG+KW++YL FLQ++Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY+ LEK
Sbjct:    1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLEK 67

[Close]

BLAST of GR397948 vs. SwissProt
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.159e-27
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSL 266
            MIIPVRCFTCGKVIGNKWD+YL  LQ DYTEGDALDAL L RYCCRRML+THVDLIEKLLNY  L
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLLNYTPL 65

[Close]

BLAST of GR397948 vs. TrEMBL
Match: D7TDI5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_127.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013776001 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.122e-32
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LEK + S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKSETS 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: A9PF10_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_712584 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.122e-32
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LEK + S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKSEGS 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: Q1EP53_MUSBA (DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative OS=Musa balbisiana GN=MBP_81C12.48 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.690e-32
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDA 281
            MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LEK ++
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTES 70

[Close]

BLAST of GR397948 vs. TrEMBL
Match: Q53LH8_ORYSJ (DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed OS=Oryza sativa subsp. japonica GN=Os11g0194800 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.737e-32
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS*G 290
            MIIPVRCFTCGKVIGNKWD YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LEK + + G
Sbjct:    1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETTAG 73

[Close]

BLAST of GR397948 vs. TrEMBL
Match: Q0IPN4_ORYSJ (Os12g0180400 protein OS=Oryza sativa subsp. japonica GN=Os12g0180400 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.490e-31
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LEK + +
Sbjct:    1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETA 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: A9NJU8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.542e-31
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD+YLD LQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+LE+ + +
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETN 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: C6T2Z9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.320e-31
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD+YLD LQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+L+K D S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPS 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: Q8LFJ6_ARATH (At1g11475 OS=Arabidopsis thaliana GN=At1g11475 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.262e-30
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD YLD LQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+LEK D S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71

[Close]

BLAST of GR397948 vs. TrEMBL
Match: D7KVG8_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_675207 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.262e-30
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVD 278
            MI+PVRCFTCGKVIGNKWD+YL+ LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN++EK D
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69

[Close]

BLAST of GR397948 vs. TrEMBL
Match: D7KMF1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471284 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.262e-30
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD YLD LQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+LEK D S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71

[Close]

BLAST of GR397948 vs. TAIR peptide
Match: AT1G61700.1 (| Symbols: | RNA polymerases N / 8 kDa subunit | chr1:22787105-22788112 FORWARD LENGTH=71)

HSP 1 Score: 136.346 bits (342), Expect = 1.018e-32
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVD 278
            MI+PVRCFTCGKVIGNKWD+YL+ LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN++EK D
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69

[Close]

BLAST of GR397948 vs. TAIR peptide
Match: AT1G11475.1 (| Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases N / 8 kDa subunit | chr1:3862520-3863805 FORWARD LENGTH=71)

HSP 1 Score: 136.346 bits (342), Expect = 1.018e-32
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 3

Query:   72 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSLEKVDAS 284
            MIIPVRCFTCGKVIGNKWD YLD LQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+LEK D S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71

The following BLAST results are available for this feature:

BLAST of GR397948 vs. SwissProt
BLAST of GR397948 vs. TrEMBL
BLAST of GR397948 vs. TAIR peptide

BLAST of GR397948 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RPAB5_BRANA	4.260e-32	90.14	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_ARATH	9.491e-32	88.41	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_DROME	3.732e-28	85.07	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_MOUSE	6.366e-28	82.09	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_HUMAN	6.366e-28	82.09	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_CHILA	6.366e-28	82.09	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_BOVIN	6.366e-28	82.09	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_CAEEL	1.418e-27	80.60	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_CAEBR	1.418e-27	80.60	DNA-directed RNA polymerases I, II, and III subuni...	[more]
RPAB5_DICDI	3.159e-27	86.15	DNA-directed RNA polymerases I, II, and III subuni...	[more]

BLAST of GR397948 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7TDI5_VITVI	5.122e-32	91.55	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9PF10_POPTR	5.122e-32	91.55	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q1EP53_MUSBA	6.690e-32	91.43	DNA-directed RNA polymerase II 8.2 kDa polypeptide...	[more]
Q53LH8_ORYSJ	8.737e-32	89.04	DNA-directed RNA polymerase II 8.2 kDa polypeptide...	[more]
Q0IPN4_ORYSJ	1.490e-31	90.14	Os12g0180400 protein OS=Oryza sativa subsp. japoni...	[more]
A9NJU8_PICSI	2.542e-31	88.73	Putative uncharacterized protein OS=Picea sitchens...	[more]
C6T2Z9_SOYBN	3.320e-31	88.73	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q8LFJ6_ARATH	1.262e-30	90.14	At1g11475 OS=Arabidopsis thaliana GN=At1g11475 PE=...	[more]
D7KVG8_ARALY	1.262e-30	88.41	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
D7KMF1_ARALY	1.262e-30	90.14	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of GR397948 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G61700.1	1.018e-32	88.41	\| Symbols: \| RNA polymerases N / 8 kDa subunit \| ...	[more]
AT1G11475.1	1.018e-32	90.14	\| Symbols: NRPB10, NRPD10, NRPE10 \| RNA polymerase...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	RNA polymerases, N/8kDa subunit	HAMAP	MF_00250	RNApol_arch_N	coord: 9..71 score: 19
IPR000268	RNA polymerases, N/8kDa subunit	PIR	PIRSF005653	DNA-directed RNA polymerase II, RPB10/RpoN subunit type	coord: 9..79 score: 1.5
IPR000268	RNA polymerases, N/8kDa subunit	PANTHER	PTHR23413:SF2	DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 14..75 score: 2.5
IPR000268	RNA polymerases, N/8kDa subunit	PFAM	PF01194	RNA_pol_N	coord: 9..68 score: 7.8
IPR000268	RNA polymerases, N/8kDa subunit	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 9..72 score: 2.7
IPR012287	Homeodomain-related	GENE3D	1.10.10.60	no description	coord: 9..75 score: 1.9
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 10..19 score
None	No IPR available	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 14..75 score: 2.5

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR397948 ID=GR397948; Name=GR397948; organism=Cicer arietinum; type=EST; length=559bp
GAAACAAAACTCTTCAAAGAAGTTTCTAGCATTCTGGTGTGGCGTGAGCA
GAGAACAACACAGAGAGAAAGATGATTATCCCCGTTCGCTGTTTCACCTG
TGGAAAGGTCATTGGAAACAAATGGGATTCATATCTTGACTTTCTGCAAG
CAGATTACACTGAAGGAGATGCACTCGATGCTTTGGGCCTGGTTCGATAC
TGTTGCAGACGCATGCTTATGACCCATGTCGACCTTATTGAGAAGCTACT
GAATTACAATAGTTTGGAAAAGGTTGATGCCAGTTAAGGTTTCTTAAGGA
ACTACAGATGACCAAGACGAGTCAGTTGCGCCGCAAGTCCTGTGTGTCAA
TGCTTTGCTTTTGTTTTAGTCCTTTTCCTAAAGCAGTTTTAGTTTGTGGT
TATTGAGACTGATTGTAAGGTGTAGCTTGTTGTTAATTACTTTTTTAATT
TTAGAATGTGCTATCTTTCATTGATATGAACCGAAGTGCAGAAGACTAAC
AAGTTTTTATAAAAATGTGGTTATTAGGAATGTAAGAATTGATAAATTTT
ATTTATATC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045449	regulation of transcription

Vocabulary: **INTERPRO**
Term	Definition
IPR000268	RPABC5/Rpb10
IPR012287	Homeodomain-related
IPR020789	RNA_pol_suN_Zn-BS

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