GR399502

EST Overview
NameGR399502
Unique NameGR399502
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length384
Libraries
Library NameType
LIBEST_024783 ICC4958 Slow drought stresses root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of GR399502 vs. SwissProt
Match: PM14_ARATH (Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.753e-23
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAK AVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKK EDEI +++EKYGV+TK+K
Sbjct:   67 IYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124          
BLAST of GR399502 vs. SwissProt
Match: PM14_MOUSE (Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.806e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTT 166
            I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG+ T
Sbjct:   67 IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121          
BLAST of GR399502 vs. SwissProt
Match: PM14_HUMAN (Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.806e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTT 166
            I+DAK A DHLSGFNV NRYL+VLYY   +  +K D KKKE+++  ++EKYG+ T
Sbjct:   67 IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121          
BLAST of GR399502 vs. SwissProt
Match: PM14_DROME (Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.819e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKE 172
            I+DAK A DHLSGFNV NRYL+VLYYQ  K  K+ D  KK++E+  ++ KY + T E
Sbjct:   63 IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119          
BLAST of GR399502 vs. SwissProt
Match: PM14_CAEEL (Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.480e-11
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGV 160
            I+DAKTA +HLSG+NV+NRYL+VLYYQ  K  K+ D +K   ++  ++E+YG+
Sbjct:   67 IFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119          
BLAST of GR399502 vs. TrEMBL
Match: B7FGI3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.453e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKKKEDEIARM+EKYGV+TK+K
Sbjct:   67 IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124          
BLAST of GR399502 vs. TrEMBL
Match: B9SXX1_RICCO (Pre-mRNA branch site protein p14, putative OS=Ricinus communis GN=RCOM_0974800 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.098e-22
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKMSKKFDQ+KKE+EIA+M+EKYGV+TK+K
Sbjct:   67 IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQRKKEEEIAKMQEKYGVSTKDK 124          
BLAST of GR399502 vs. TrEMBL
Match: D7M4G9_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_909193 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.579e-22
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAK AVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKK EDEI +++EKYGV+TK+K
Sbjct:   67 IYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124          
BLAST of GR399502 vs. TrEMBL
Match: B9HNI9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_649901 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.579e-22
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKE 172
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKKKE+EI +M+EKYGVTTK+
Sbjct:   68 IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEIVKMQEKYGVTTKD 124          
BLAST of GR399502 vs. TrEMBL
Match: B9GG60_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_706505 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.579e-22
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KKFDQKKKE+EIA+M+EKYGV+TK+K
Sbjct:   68 IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEEIAKMQEKYGVSTKDK 125          
BLAST of GR399502 vs. TrEMBL
Match: B3TLZ0_ELAGV (RNA binding protein OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.041e-21
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKMSKK DQKKKEDE+ARM+EKYG+++K+K
Sbjct:   67 IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKVDQKKKEDELARMQEKYGLSSKDK 124          
BLAST of GR399502 vs. TrEMBL
Match: A5AES3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037629 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.168e-21
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVT 163
            IYDAKTAVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKKKEDE+A+M+EKYGV+
Sbjct:   67 IYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDELAKMQEKYGVS 120          
BLAST of GR399502 vs. TrEMBL
Match: D5A9T1_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.714e-20
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAK AVDHLSGFNVANRYLIVLYYQ +KM+KK D KKKED++A+M+EKYGV+TK+K
Sbjct:   66 IYDAKNAVDHLSGFNVANRYLIVLYYQQSKMTKKVDHKKKEDDLAKMQEKYGVSTKDK 123          
BLAST of GR399502 vs. TrEMBL
Match: D7L2R9_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899711 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.318e-19
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IY+AK AVDHLSGFN+ANRYLIV YYQHAKMSKK D KK+E+EI +++EKYGV+TK+K
Sbjct:   68 IYEAKEAVDHLSGFNIANRYLIVQYYQHAKMSKKLDLKKEEEEITKLQEKYGVSTKDK 125          
BLAST of GR399502 vs. TrEMBL
Match: C5WVZ7_SORBI (Putative uncharacterized protein Sb01g003790 OS=Sorghum bicolor GN=Sb01g003790 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.838e-18
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTK 169
            IYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKK D KKKEDEI R++EKYG+ +K
Sbjct:   67 IYDAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDVKKKEDEITRLQEKYGIGSK 122          
BLAST of GR399502 vs. TAIR peptide
Match: AT5G12190.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3940731-3941105 REVERSE LENGTH=124)

HSP 1 Score: 107.842 bits (268), Expect = 1.694e-24
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 2
Query:    2 IYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEDEIARMREKYGVTTKEK 175
            IYDAK AVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKK EDEI +++EKYGV+TK+K
Sbjct:   67 IYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124          
The following BLAST results are available for this feature:
BLAST of GR399502 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
PM14_ARATH1.753e-2386.21Pre-mRNA branch site p14-like protein OS=Arabidops... [more]
PM14_MOUSE2.806e-1358.18Pre-mRNA branch site protein p14 OS=Mus musculus G... [more]
PM14_HUMAN2.806e-1358.18Pre-mRNA branch site protein p14 OS=Homo sapiens G... [more]
PM14_DROME1.819e-1256.14Pre-mRNA branch site p14-like protein OS=Drosophil... [more]
PM14_CAEEL4.480e-1152.83Pre-mRNA branch site p14-like protein OS=Caenorhab... [more]
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BLAST of GR399502 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FGI3_MEDTR1.453e-2393.10Putative uncharacterized protein OS=Medicago trunc... [more]
B9SXX1_RICCO2.098e-2287.93Pre-mRNA branch site protein p14, putative OS=Rici... [more]
D7M4G9_ARALY3.579e-2286.21RNA recognition motif-containing protein OS=Arabid... [more]
B9HNI9_POPTR3.579e-2289.47Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GG60_POPTR3.579e-2287.93Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B3TLZ0_ELAGV1.041e-2186.21RNA binding protein OS=Elaeis guineensis var. tene... [more]
A5AES3_VITVI5.168e-2190.74Putative uncharacterized protein OS=Vitis vinifera... [more]
D5A9T1_PICSI5.714e-2079.31Putative uncharacterized protein OS=Picea sitchens... [more]
D7L2R9_ARALY6.318e-1975.86Putative uncharacterized protein OS=Arabidopsis ly... [more]
C5WVZ7_SORBI1.838e-1882.14Putative uncharacterized protein Sb01g003790 OS=So... [more]
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BLAST of GR399502 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G12190.11.694e-2486.21| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22630PRE-MRNA BRANCH SITE PROTEINcoord: 1..58
score: 1.6
NoneNo IPR availableSEGsegsegcoord: 65..82
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR399502 ID=GR399502; Name=GR399502; organism=Cicer arietinum; type=EST; length=384bp
TATTTACGACGCTAAGACCGCCGTCGATCATCTCTCTGGTTTCAACGTCG
CTAATCGTTATCTCATCGTTCTTTATTATCAGCATGCTAAGATGAGTAAG
AAGTTTGATCAGAAGAAGAAGGAAGATGAGATTGCTCGTATGCGGGAGAA
GTATGGTGTTACTACTAAAGAGAAGTAGTTCATGACACGCGCGCTCTTCT
TTCTGAAACTCCTTTTGATTTATTTTGCTAATTTCTAGGGTTTCTTCGGT
TGTGTTAGGGTTTTGTGGTAATTCACTATGTATAACTTGTTGATGGATGT
TTGGATTCGCAATTGAATAGTTTTATTGATATATCAATGTAAAGCAGGAT
TATGATGTATGATATTGTTACTTTTCCGCTAACT
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