GR420770

EST Overview
NameGR420770
Unique NameGR420770
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length400
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Homology
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.112e-9
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            +L +G+DASG+++KG  VYQFVDKYGANV    Y P     DWS +G    GGTT     L  WAVTL G LAG
Sbjct:   56 SLRDGVDASGRKQKGKGVYQFVDKYGANVD--GYSPIYNTDDWSPSGDVYVGGTT----GLAIWAVTLVGILAG 123
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.481e-8
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEPPIK--DWSATGGGTT*RLRWL*GWAVTLAGFLAG 377
            +L +G+DASG++ KG  VY+FVDKYGANV    Y P     +WSA+G      +  L  WAVTLAG LAG
Sbjct:   61 DLRDGVDASGRKGKGYGVYKFVDKYGANVD--GYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAG 128
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.938e-8
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = -3 
Query:  174 LPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEPPI--KDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 374
            L +G+D+SG++  G  VYQFVDKYGANV    Y P    ++W+ TG    GGTT  L     WAVTLAG LAG
Sbjct:   61 LRDGVDSSGRKPTGKGVYQFVDKYGANVD--GYSPIYNEEEWAPTGDVYAGGTTGLLI----WAVTLAGLLAG 127
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.755e-8
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  174 LPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 374
            L +G+DASG++ KG  VYQ+VDKYGANV    Y P     +WS +G    GGTT     L  WAVTL G LAG
Sbjct:   59 LRDGVDASGRKPKGKGVYQYVDKYGANVD--GYSPIYNTDEWSPSGDVYVGGTT----GLAIWAVTLVGILAG 125
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.755e-8
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEPPI--KDWSATGGGTT*RLRWL*GWAVTLAGFLAG 377
            +L +G+DASG++ KG  VY++VDKYGANV    Y P     +WSA+G      +  L  WAVTLAG LAG
Sbjct:   60 DLRDGVDASGRKGKGYGVYKYVDKYGANVD--GYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127
[Close]
BLAST of GR420770 vs. SwissProt
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.013e-7
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  174 LPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 374
            L +G+DASG++ KG  VYQ+VDKYGANV    Y P     +WS +G    GGTT     L  WAVTL G LAG
Sbjct:   59 LRDGVDASGRKPKGKGVYQYVDKYGANVD--GYSPIYNTDEWSPSGDVYVGGTT----GLAIWAVTLLGILAG 125
[Close]
BLAST of GR420770 vs. TrEMBL
Match: Q6V7X5_TRIPR (10 kDa photosystem II polypeptide OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.603e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANV--IQ*WYEPPIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            +LPNGLDASG+++KG  VYQFVDKYGANV      YEP  KDWS TG    GGTT     L  WAVTLAG LAG
Sbjct:   56 DLPNGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYEP--KDWSPTGDVYTGGTT----GLAIWAVTLAGLLAG 123
[Close]
BLAST of GR420770 vs. TrEMBL
Match: Q2PXN6_ARAHY (Chloroplast photosystem II 10 kDa protein (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.603e-9
Identity = 44/74 (59.46%), Postives = 47/74 (63.51%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            NL +GLDASG++ KG  VYQFVDKYGANV    Y P    KDWS TG    GGTT     L  WAVTL G LAG
Sbjct:   49 NLRDGLDASGRKGKGKGVYQFVDKYGANVD--GYSPIYDQKDWSPTGDVYTGGTT----GLAIWAVTLVGLLAG 116
[Close]
BLAST of GR420770 vs. TrEMBL
Match: A9PAP8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_661166 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.439e-9
Identity = 43/74 (58.11%), Postives = 48/74 (64.86%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANV--IQ*WYEPPIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            +L  GLDASG++ KG  VYQFVDKYGANV      Y+P  KDWS +G    GGTT  L     WAVTLAG LAG
Sbjct:   57 DLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDP--KDWSPSGEVYVGGTTGLLI----WAVTLAGLLAG 124
[Close]
BLAST of GR420770 vs. TrEMBL
Match: Q8GV53_9LILI (Photosystem II 10 kDa protein OS=Xerophyta humilis GN=PsbR PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.798e-9
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANV--IQ*WYEPPIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            NLP GLDASG+++KG  VYQFVDKYGANV      Y P   +WS +G    GGTT     L  WA+TLAG L G
Sbjct:   59 NLPAGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYSP--DEWSPSGDVYVGGTT----GLIVWAITLAGLLGG 126
[Close]
BLAST of GR420770 vs. TrEMBL
Match: C6SW43_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.878e-8
Identity = 42/73 (57.53%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  174 LPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 374
            L  G+DASG++ KG  VYQFVDKYGANV    Y P    KDWS TG    GGTT     L  WAVTL G LAG
Sbjct:   60 LREGVDASGRKGKGKGVYQFVDKYGANVD--GYSPIYDTKDWSPTGDVYAGGTT----GLAIWAVTLLGLLAG 126
[Close]
BLAST of GR420770 vs. TrEMBL
Match: C6SWI3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.758e-8
Identity = 42/73 (57.53%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  174 LPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 374
            L +G DASG++ KG  VYQFVDKYGANV    Y P    KDWS TG    GGTT     L  WAVTL G LAG
Sbjct:   59 LRDGTDASGRKGKGKGVYQFVDKYGANVD--GYSPIYDTKDWSPTGDVYAGGTT----GLAIWAVTLLGLLAG 125
[Close]
BLAST of GR420770 vs. TrEMBL
Match: B0L635_CICAR (10 kDa photosystem II polypeptide (Fragment) OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.758e-8
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = -3 
Query:  243 NLPNGLDASGQQEKG*RVYQFVDKYGANV--IQ*WYEPPIKDWSATG 377
            +LPNGLDASG+++KG  VYQFVDKYGANV      YEP  KDWSATG
Sbjct:   56 DLPNGLDASGRKQKGKGVYQFVDKYGANVDGYSPIYEP--KDWSATG 100
[Close]
BLAST of GR420770 vs. TrEMBL
Match: A9PJW8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 41/74 (55.41%), Postives = 46/74 (62.16%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            NL +GLDASG++ KG  VYQ+VDKYGANV    Y P     +WS TG    GG T  L     WAVTLAG LAG
Sbjct:   56 NLRDGLDASGRKPKGKGVYQYVDKYGANVD--GYSPIYNTDEWSPTGDVYAGGKTGLLI----WAVTLAGILAG 123
[Close]
BLAST of GR420770 vs. TrEMBL
Match: A9PH94_POPTR (Putative uncharacterized protein OS=Populus trichocarpa GN=POPTRDRAFT_674736 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 41/74 (55.41%), Postives = 46/74 (62.16%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            NL +GLDASG++ KG  VYQ+VDKYGANV    Y P     +WS TG    GG T  L     WAVTLAG LAG
Sbjct:   57 NLRDGLDASGRKPKGKGVYQYVDKYGANVD--GYSPIYNTDEWSPTGDVYAGGKTGLLI----WAVTLAGILAG 124
[Close]
BLAST of GR420770 vs. TrEMBL
Match: D6BRD6_9ROSI (Chloroplast photosystem II 10 kDa polypeptide OS=Jatropha curcas PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.372e-8
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEP--PIKDWSATG----GGTT*RLRWL*GWAVTLAGFLAG 377
            NL NGLDASG++  G  VYQ+VDKYGANV    Y P     +WS TG    GGTT     L  WAVTL G LAG
Sbjct:   57 NLRNGLDASGRKATGKGVYQYVDKYGANVD--GYSPIYNTDEWSPTGDVYAGGTT----GLAIWAVTLLGILAG 124
[Close]
BLAST of GR420770 vs. TAIR peptide
Match: AT1G79040.1 (| Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140)

HSP 1 Score: 55.8398 bits (133), Expect = 8.397e-9
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = -3 
Query:  174 NLPNGLDASGQQEKG*RVYQFVDKYGANVIQ*WYEPPI--KDWSATGGGTT*RLRWL*GWAVTLAGFLAG 377
            +L +G+DASG++ KG  VY++VDKYGANV    Y P     +WSA+G      +  L  WAVTLAG LAG
Sbjct:   60 DLRDGVDASGRKGKGYGVYKYVDKYGANVD--GYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127
The following BLAST results are available for this feature:
BLAST of GR420770 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
PSBR_TOBAC4.112e-954.05Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM3.481e-851.43Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL5.938e-852.05Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU7.755e-852.05Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_ARATH7.755e-850.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.013e-752.05Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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BLAST of GR420770 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q6V7X5_TRIPR5.603e-1263.5110 kDa photosystem II polypeptide OS=Trifolium pra... [more]
Q2PXN6_ARAHY2.603e-959.46Chloroplast photosystem II 10 kDa protein (Fragmen... [more]
A9PAP8_POPTR4.439e-958.11Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q8GV53_9LILI5.798e-955.41Photosystem II 10 kDa protein OS=Xerophyta humilis... [more]
C6SW43_SOYBN2.878e-857.53Putative uncharacterized protein OS=Glycine max PE... [more]
C6SWI3_SOYBN3.758e-857.53Putative uncharacterized protein OS=Glycine max PE... [more]
B0L635_CICAR3.758e-870.2110 kDa photosystem II polypeptide (Fragment) OS=Ci... [more]
A9PJW8_9ROSI6.410e-855.41Putative uncharacterized protein OS=Populus tricho... [more]
A9PH94_POPTR6.410e-855.41Putative uncharacterized protein OS=Populus tricho... [more]
D6BRD6_9ROSI8.372e-855.41Chloroplast photosystem II 10 kDa polypeptide OS=J... [more]
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BLAST of GR420770 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G79040.18.397e-950.00| Symbols: PSBR | photosystem II subunit R | chr1:... [more]
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Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR420770 ID=GR420770; Name=GR420770; organism=Cicer arietinum; type=EST; length=400bp
GTTTTTTTTCTTTTTTTAAATCCATTTATCATACAACAGGGAAACAGAAA
CTATGTCCACAAGTATTTGATGAATATATCCTTAGGAATGAGTTACATAC
TTAAATTTTACAAATATGAACTTAGCAAAGTCTATTGTGACAGTTGTAAA
GCACTTGTAGTGCACGACAAGACACCAGCCAGAAAACCAGCTAGAGTTAC
TGCCCAACCCTATAGCCAGCGTAAACGTCAAGTCGTACCTCCGCCGGTTG
CAGACCAGTCCTTGATAGGGGGTTCATACCATCACTGTATAACATTAGCA
CCATATTTGTCCACAAACTGGTAAACCCTTCACCCTTTTTCCTGTTGTCC
AGAAGCATCAAGTCCATTGGGAAGGTTCCATATCCATGCCACCACCAGAG
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