GR396892

EST Overview


Name	GR396892
Unique Name	GR396892
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	462

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28

Homology

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.472e-19
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKH GFGLGFERMILFATGL+NIRDVIPFPRYPG+ADL
Sbjct:  527 LDLRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRYPGKADL 572

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.325e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKH GFGLGFERMI FATG++NIRDVIPFPRYPG+ADL
Sbjct:  526 LDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYPGKADL 571

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_SOLUE (Asparaginyl-tRNA synthetase OS=Solibacter usitatus (strain Ellin6076) GN=asnS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.249e-14
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            LDLRRFG V+HAGFG+GFERM+++ TG++NIRDVIPFPR PG A+
Sbjct:  416 LDLRRFGGVEHAGFGMGFERMLMYLTGMKNIRDVIPFPRTPGNAE 460

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.249e-14
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            L+LR+FG+V H+GFG GFER++ F TG+ENIRDVIPFPR+PG+AD
Sbjct:  422 LELRKFGSVPHSGFGAGFERLVQFTTGMENIRDVIPFPRHPGKAD 466

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_THEEB (Asparaginyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.541e-14
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            LDLRR+G+V HAGFGLGFER++ F TG++NIRDVIPFPR PG A+
Sbjct:  417 LDLRRYGSVPHAGFGLGFERLVQFMTGMDNIRDVIPFPRTPGNAE 461

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_LEGPL (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Lens) GN=asnS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.237e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2

Query:   11 DLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            DLRR+GTV HAGFGLGFER+I + TG+ N+RDVIPFPR PG AD
Sbjct:  423 DLRRYGTVPHAGFGLGFERLISYVTGVSNVRDVIPFPRTPGHAD 466

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_LEGPC (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Corby) GN=asnS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.237e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2

Query:   11 DLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            DLRR+GTV HAGFGLGFER+I + TG+ N+RDVIPFPR PG AD
Sbjct:  423 DLRRYGTVPHAGFGLGFERLISYVTGVSNVRDVIPFPRTPGHAD 466

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_LEGPA (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=asnS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.237e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2

Query:   11 DLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            DLRR+GTV HAGFGLGFER+I + TG+ N+RDVIPFPR PG AD
Sbjct:  423 DLRRYGTVPHAGFGLGFERLISYVTGVSNVRDVIPFPRTPGHAD 466

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_PARD8 (Asparaginyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=asnS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.612e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            LD RRFGTV H+GFGLGFER++LF TG+ NIRDVIPFPR P  A+
Sbjct:  423 LDTRRFGTVPHSGFGLGFERLLLFVTGMANIRDVIPFPRTPNNAE 467

[Close]

BLAST of GR396892 vs. SwissProt
Match: SYN_LAWIP (Asparaginyl-tRNA synthetase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=asnS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.750e-13
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPG 133
            LDLRRFGTV HAGFGLGFER+++  TG+ NIRDV+PFPR PG
Sbjct:  410 LDLRRFGTVPHAGFGLGFERLVMLLTGVSNIRDVLPFPRTPG 451

[Close]

BLAST of GR396892 vs. TrEMBL
Match: Q93WM3_ORYSJ (Os01g0372700 protein OS=Oryza sativa subsp. japonica GN=B1039D07.28 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.346e-18
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATGLENIRDVIPFPRYPGRADL
Sbjct:  514 LDLRRFGSVKHSGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 559

[Close]

BLAST of GR396892 vs. TrEMBL
Match: C6TJZ3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.346e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKHAGFGLGFERMI FATGLENIRDVIPFPRYPGRADL
Sbjct:  176 LDLRRYGTVKHAGFGLGFERMIFFATGLENIRDVIPFPRYPGRADL 221

[Close]

BLAST of GR396892 vs. TrEMBL
Match: A2ZT90_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_01810 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.346e-18
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATGLENIRDVIPFPRYPGRADL
Sbjct:  515 LDLRRFGSVKHSGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 560

[Close]

BLAST of GR396892 vs. TrEMBL
Match: A2WQ40_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01974 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.346e-18
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATGLENIRDVIPFPRYPGRADL
Sbjct:  514 LDLRRFGSVKHSGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 559

[Close]

BLAST of GR396892 vs. TrEMBL
Match: C5WPG5_SORBI (Putative uncharacterized protein Sb01g039570 OS=Sorghum bicolor GN=Sb01g039570 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.001e-18
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATG+ENIRDVIPFPRYPGRADL
Sbjct:  516 LDLRRFGSVKHSGFGLGFERMILFATGMENIRDVIPFPRYPGRADL 561

[Close]

BLAST of GR396892 vs. TrEMBL
Match: C5WN03_SORBI (Putative uncharacterized protein Sb01g010060 OS=Sorghum bicolor GN=Sb01g010060 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.001e-18
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATG+ENIRDVIPFPRYPGRADL
Sbjct:  516 LDLRRFGSVKHSGFGLGFERMILFATGMENIRDVIPFPRYPGRADL 561

[Close]

BLAST of GR396892 vs. TrEMBL
Match: C0P5B0_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.001e-18
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATG+ENIRDVIPFPRYPGRADL
Sbjct:  516 LDLRRFGSVKHSGFGLGFERMILFATGMENIRDVIPFPRYPGRADL 561

[Close]

BLAST of GR396892 vs. TrEMBL
Match: B6SVS6_MAIZE (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.001e-18
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFG+VKH+GFGLGFERMILFATG+ENIRDVIPFPRYPGRADL
Sbjct:  516 LDLRRFGSVKHSGFGLGFERMILFATGMENIRDVIPFPRYPGRADL 561

[Close]

BLAST of GR396892 vs. TrEMBL
Match: Q677D3_HYAOR (Asparaginyl-tRNA synthetase (Fragment) OS=Hyacinthus orientalis PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.226e-18
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRRFGTVKH+GFGLGFERMI+FATG++NIRDVIPFPRYPGRADL
Sbjct:   43 LDLRRFGTVKHSGFGLGFERMIMFATGIDNIRDVIPFPRYPGRADL 88

[Close]

BLAST of GR396892 vs. TrEMBL
Match: D7TBC3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015254001 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.914e-18
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKH GFGLGFERMILFATG++NIRDVIPFPRYPGRADL
Sbjct:  472 LDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 517

[Close]

BLAST of GR396892 vs. TAIR peptide
Match: AT5G56680.1 (| Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr5:22936645-22938841 FORWARD LENGTH=572)

HSP 1 Score: 92.8189 bits (229), Expect = 8.711e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKH GFGLGFERMILFATGL+NIRDVIPFPRYPG+ADL
Sbjct:  527 LDLRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRYPGKADL 572

[Close]

BLAST of GR396892 vs. TAIR peptide
Match: AT1G70980.1 (| Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr1:26762339-26764394 FORWARD LENGTH=571)

HSP 1 Score: 89.7373 bits (221), Expect = 7.375e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 145
            LDLRR+GTVKH GFGLGFERMI FATG++NIRDVIPFPRYPG+ADL
Sbjct:  526 LDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYPGKADL 571

[Close]

BLAST of GR396892 vs. TAIR peptide
Match: AT4G17300.1 (| Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:9681558-9684833 FORWARD LENGTH=567)

HSP 1 Score: 74.3294 bits (181), Expect = 3.206e-14
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            LDLRR+G+V HAGFGLGFER++ F TG++NIRDVIPFPR P  A+
Sbjct:  522 LDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPRTPASAE 566

[Close]

BLAST of GR396892 vs. TAIR peptide
Match: AT3G07420.1 (| Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | asparaginyl-tRNA synthetase 2 | chr3:2374179-2376644 REVERSE LENGTH=638)

HSP 1 Score: 62.003 bits (149), Expect = 1.647e-10
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 2

Query:    8 LDLRRFGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRAD 142
            LDLRR GTVKH+G  L  E+M+L+ATGL +I+D IPFPR  G+A+
Sbjct:  593 LDLRRHGTVKHSGISLSMEQMLLYATGLPDIKDAIPFPRSWGKAN 637

The following BLAST results are available for this feature:

BLAST of GR396892 vs. SwissProt
BLAST of GR396892 vs. TrEMBL
BLAST of GR396892 vs. TAIR peptide

BLAST of GR396892 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
SYNC1_ARATH	7.472e-19	91.30	Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab...	[more]
SYNC3_ARATH	6.325e-18	86.96	Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab...	[more]
SYN_SOLUE	3.249e-14	73.33	Asparaginyl-tRNA synthetase OS=Solibacter usitatus...	[more]
SYN_PARUW	3.249e-14	71.11	Asparaginyl-tRNA synthetase OS=Protochlamydia amoe...	[more]
SYN_THEEB	5.541e-14	73.33	Asparaginyl-tRNA synthetase OS=Thermosynechococcus...	[more]
SYN_LEGPL	7.237e-14	75.00	Asparaginyl-tRNA synthetase OS=Legionella pneumoph...	[more]
SYN_LEGPC	7.237e-14	75.00	Asparaginyl-tRNA synthetase OS=Legionella pneumoph...	[more]
SYN_LEGPA	7.237e-14	75.00	Asparaginyl-tRNA synthetase OS=Legionella pneumoph...	[more]
SYN_PARD8	1.612e-13	73.33	Asparaginyl-tRNA synthetase OS=Parabacteroides dis...	[more]
SYN_LAWIP	2.750e-13	76.19	Asparaginyl-tRNA synthetase OS=Lawsonia intracellu...	[more]

BLAST of GR396892 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q93WM3_ORYSJ	2.346e-18	95.65	Os01g0372700 protein OS=Oryza sativa subsp. japoni...	[more]
C6TJZ3_SOYBN	2.346e-18	95.65	Putative uncharacterized protein OS=Glycine max PE...	[more]
A2ZT90_ORYSJ	2.346e-18	95.65	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2WQ40_ORYSI	2.346e-18	95.65	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5WPG5_SORBI	4.001e-18	93.48	Putative uncharacterized protein Sb01g039570 OS=So...	[more]
C5WN03_SORBI	4.001e-18	93.48	Putative uncharacterized protein Sb01g010060 OS=So...	[more]
C0P5B0_MAIZE	4.001e-18	93.48	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B6SVS6_MAIZE	4.001e-18	93.48	Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Zea ...	[more]
Q677D3_HYAOR	5.226e-18	91.30	Asparaginyl-tRNA synthetase (Fragment) OS=Hyacinth...	[more]
D7TBC3_VITVI	8.914e-18	91.30	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of GR396892 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G56680.1	8.711e-20	91.30	\| Symbols: SYNC1, EMB2755, SYNC1 ARATH \| Class II ...	[more]
AT1G70980.1	7.375e-19	86.96	\| Symbols: SYNC3 \| Class II aminoacyl-tRNA and bio...	[more]
AT4G17300.1	3.206e-14	71.11	\| Symbols: NS1, OVA8, ATNS1 \| Class II aminoacyl-t...	[more]
AT3G07420.1	1.647e-10	62.22	\| Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 \| aspara...	[more]

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR396892 ID=GR396892; Name=GR396892; organism=Cicer arietinum; type=EST; length=462bp
GCGGGACCTTGATCTGAGGCGGTTTGGAACAGTGAAACATGCTGGATTTG
GTCTTGGCTTTGAAAGGATGATTCTTTTTGCCACTGGCCTGGAAAATATT
AGAGACGTGATTCCCTTCCCACGATATCCAGGCAGAGCAGATCTATGATA
TTTATGACCGATTTCTTTAAATGGCTTTCACAATTCCCTTACTAAAGTAG
TTGAGTCGAAAATGGAAAAATCGTTTTCTTGTAGATCATAAACATCCGTC
TTTGTTTCTTGGGTTACACTCTTTTACCGACTATTTATTACTTTTGATAG
AATGCTGGGTTTTTTGTTTCTGCGTTTATGTTTTATATCATTCATTATAT
AGCATTTAAACAACTTGTCCTTAAAGGACCTGGTAGTCACATTCCATTTT
ATTTTCCAGGCACACGATTGATTCAATATACGATTAATCTTGTGGAGACA
TGGTTTTTAGTG

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