GR406333

EST Overview
NameGR406333
Unique NameGR406333
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length319
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR406333 vs. TrEMBL
Match: A9ZN14_HEVBR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Hevea brasiliensis GN=HbHDS PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.492e-9
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  180 MAAGTVPASFSSFRKRDSGLGFGKSIDFVRVSDLKRMNSARTKVSI 317
            MA G VPASF+  + RDS LGFGKS+DFVRV DLKR+ S R K+S+
Sbjct:    1 MATGAVPASFTGLKTRDSSLGFGKSMDFVRVCDLKRIKSGRKKISM 46          
BLAST of GR406333 vs. TrEMBL
Match: B9HQ97_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821630 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.662e-9
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  180 MAAGTVPASFSSFRKRDSGLGFGKSIDFVRVSDLKRMNSARTKVSI 317
            MA G VPASFS  + ++SGLGFGKS+DFVR+ D+KR+ S R K+S+
Sbjct:    1 MATGAVPASFSGLQMKESGLGFGKSMDFVRICDIKRIKSGRKKISM 46          
BLAST of GR406333 vs. TrEMBL
Match: B9MZ45_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836719 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.707e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  180 MAAGTVPASFSSFRKRDSGLGFGKSIDFVRVSDLKRMNSARTKVSI 317
            MA G VPASFS  + R+S LGFGKS+DFVR+ D+KR+ S R ++S+
Sbjct:    1 MATGAVPASFSGLKMRESSLGFGKSVDFVRICDIKRIKSGRKRISM 46          
BLAST of GR406333 vs. TrEMBL
Match: Q84XR5_CATRO (GCPE protein OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.229e-8
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  180 MAAGTVPASFSSFRKRDSGLGFGKSIDFVRVSDLKRMNSARTKVSI 317
            MA GTVPASF+  + R++GLGF KS+DFV+VSDL+R+   R KVS+
Sbjct:    1 MATGTVPASFTGLKSRENGLGFAKSMDFVQVSDLRRVKFRRAKVSV 46          
BLAST of GR406333 vs. TrEMBL
Match: Q8GZR6_SOLLC (GcpE OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.486e-8
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  180 MAAGTVPASFSSFRKRDSGLGFGKSIDFVRVSDLKRMNSARTKVSI 317
            MAAGTVPASF+  +  ++GLGF KS++F+RVSDL+R+   RTK S+
Sbjct:    1 MAAGTVPASFTGLKSNENGLGFAKSMNFIRVSDLQRVKFRRTKFSV 46          
The following BLAST results are available for this feature:
BLAST of GR406333 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
A9ZN14_HEVBR4.492e-965.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
B9HQ97_POPTR7.662e-960.87Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9MZ45_POPTR1.707e-858.70Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q84XR5_CATRO2.229e-860.87GCPE protein OS=Catharanthus roseus PE=2 SV=1[more]
Q8GZR6_SOLLC6.486e-858.70GcpE OS=Solanum lycopersicum PE=2 SV=1[more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 14..18
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR406333 ID=GR406333; Name=GR406333; organism=Cicer arietinum; type=EST; length=319bp
TAGTGGTTTTGAATTTTAGTATCTTACAAAAACATGTTCCTTTGTCATGT
TTTGTAGTCAACAAAGTTCATAAGGTTGATTTTAGTTACAAAATTAATCT
TATAAATTAGAGTTAGAAAGAAAACCTTTGAATCTTTGTTTCCATCATCA
TCTTCATCAGGTGTGATTGTGCTTCAAAAATGGCTGCGGGAACTGTGCCA
GCTTCGTTTTCTAGCTTCAGGAAACGCGATTCTGGTTTGGGGTTTGGGAA
AAGTATTGATTTTGTGAGAGTTTCTGATTTGAAAAGAATGAATTCTGCAA
GGACAAAAGTGTCAATTAT
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