GR407998

EST Overview
NameGR407998
Unique NameGR407998
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length437
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
[Close]
BLAST of GR407998 vs. TrEMBL
Match: Q93YH8_SOYBN (HMG I/Y like protein OS=Glycine max GN=AT-1SNBP PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.893e-8
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 2 
Query:  125 VPFAVEPNNHXXXXXXXXXXXXXXXXXXYAEMIYNAIEALKEKNGSSKRAISKYIEQVYKRPP 313
            VPF VEP+NH                  Y EMIY AI ALKEK+GSSKRAI KY+EQVYK  P
Sbjct:   14 VPFTVEPSNHVTPADNTNTNHPP-----YDEMIYTAIGALKEKDGSSKRAIGKYMEQVYKDLP 71
[Close]
BLAST of GR407998 vs. TrEMBL
Match: Q1SN01_MEDTR (High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal OS=Medicago truncatula GN=MtrDRAFT_AC139526g21v2 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.449e-7
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:  209 YAEMIYNAIEALKEKNGSSKRAISKYIEQVYKR--PP 313
            YAEMIY AIEALKEK+GSSKRAI KYIE VYK+  PP
Sbjct:   30 YAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPP 66
The following BLAST results are available for this feature:
BLAST of GR407998 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
Q93YH8_SOYBN2.893e-855.56HMG I/Y like protein OS=Glycine max GN=AT-1SNBP PE... [more]
Q1SN01_MEDTR2.449e-781.08High mobility group proteins HMG-I and HMG-Y; Link... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..21
score: NAcoord: 30..37
score: NAcoord: 53..64
score
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 23..101
score: 2.6
NoneNo IPR availableSEGsegsegcoord: 5..38
score: NAcoord: 52..69
score: NAcoord: 105..116
score
NoneNo IPR availableSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 61..101
score: 3.9
NoneNo IPR availableSEGsegsegcoord: 5..22
score: NAcoord: 24..46
score: NAcoord: 48..71
score
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 8..48
score: 5.5
NoneNo IPR availableSEGsegsegcoord: 8..25
score
NoneNo IPR availableSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 17..48
score: 4.9
NoneNo IPR availableSEGsegsegcoord: 3..19
score: NAcoord: 30..37
score: NAcoord: 45..58
score
NoneNo IPR availableSEGsegsegcoord: 2..18
score
IPR005818Histone H1/H5PFAMPF00538Linker_histonecoord: 66..105
score: 9.9
IPR005818Histone H1/H5SMARTSM00526no descriptioncoord: 64..119
score: 1.7
IPR005818Histone H1/H5PFAMPF00538Linker_histonecoord: 22..49
score: 4.8
IPR005819Histone H5PRINTSPR00624HISTONEH5coord: 53..74
score: 3e-05coord: 80..97
score: 3
IPR011991Winged helix-turn-helix transcription repressor DNA-bindingGENE3D1.10.10.10no descriptioncoord: 63..107
score: 1.4
IPR011991Winged helix-turn-helix transcription repressor DNA-bindingGENE3D1.10.10.10no descriptioncoord: 19..48
score: 1.1

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR407998 ID=GR407998; Name=GR407998; organism=Cicer arietinum; type=EST; length=437bp
GATTTTCCCAAATTTCGAATCTACCCTCTTTCTCTTTCTCTCTCTATCTT
TTCCTTTCTCTCTCCTCATGGACCCATCCTCGATCTCTCCACCACCACCA
CCTCCACCTCCGTCTACCAACGCCGTCCCTTTCGCCGTCGAACCAAACAA
CCACCCTCCACCACCAGCACAGCCACCTCTCTCATCTCCACCTTCAACTC
ACCCTCCATACGCTGAGATGATATACAACGCAATTGAAGCTTTGAAAGAG
AAGAACGGTTCAAGCAAAAGAGCAATATCGAAATACATAGAACAAGTTTA
CAAACGACCACCCTCCACCACCAGCACAGCCACCTCTCTCATCTCCACCT
TCAACTCACCCTCCATACGCTGAGATGATATACAACGCAATTGAAGCTTT
GAAAGAGAAGAACGGTTCAAGCAAAAGAGCAATATCG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR005819H1/H5
IPR011991ArsR-like_HTH