GR408393

EST Overview


Name	GR408393
Unique Name	GR408393
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	682

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.921e-36
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.774e-35
Identity = 71/86 (82.56%), Postives = 72/86 (83.72%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGGKARLTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.006e-34
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGGKA+LTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.232e-34
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            MVLQNDIDLL+PP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARL EGCSFRKK
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.509e-30
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVL +DIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFR+K D
Sbjct:    1 MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.526e-25
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 2

Query:   92 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            +DLLNP              VQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C +VLCQPTGGKARL EGCSFR+K
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.687e-24
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 2

Query:   92 IDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            +DLLNP              V +P SFFMDVKC GCF ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.203e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 2

Query:   95 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.203e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 2

Query:   95 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of GR408393 vs. SwissProt
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.203e-24
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 2

Query:   95 DLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            DLL+P              VQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C TVLCQPTGGKARLTEGCSFR+K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82

[Close]

BLAST of GR408393 vs. TrEMBL
Match: B7FN54_MEDTR (Ribosomal protein S27 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.383e-36
Identity = 74/86 (86.05%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: C6SWV6_SOYBN (Ribosomal protein S27 OS=Glycine max PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.765e-36
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: B7FHA3_MEDTR (Ribosomal protein S27 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.765e-36
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: B9RG16_RICCO (Ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.175e-35
Identity = 72/86 (83.72%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: C6SYW6_SOYBN (Ribosomal protein S27 OS=Glycine max PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.841e-35
Identity = 72/86 (83.72%), Postives = 73/86 (84.88%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFRKKGD
Sbjct:    1 MVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: D7LS57_ARALY (ARS27A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486581 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.329e-35
Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: A5APU3_VITVI (Ribosomal protein S27 OS=Vitis vinifera GN=VITISV_040920 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-34
Identity = 71/86 (82.56%), Postives = 73/86 (84.88%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVL NDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLPNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: A1YMY0_BRACM (Ribosomal protein S27 OS=Brassica campestris PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-34
Identity = 72/84 (85.71%), Postives = 72/84 (85.71%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 84

[Close]

BLAST of GR408393 vs. TrEMBL
Match: Q3HVK9_SOLTU (Ribosomal protein S27 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.410e-34
Identity = 70/86 (81.40%), Postives = 73/86 (84.88%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVL ND+DLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARLTEGCSFR+KGD
Sbjct:    1 MVLPNDVDLLNPPAEQEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. TrEMBL
Match: D7SVF6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032964001 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-34
Identity = 73/96 (76.04%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   44 VSRVLRFHHTMVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            VS   +    MVL NDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+ARLTEGCSFRKKGD
Sbjct:   65 VSASAKVSTKMVLPNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQLVLCQPTGGRARLTEGCSFRKKGD 160

[Close]

BLAST of GR408393 vs. TAIR peptide
Match: AT3G61110.1 (| Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86)

HSP 1 Score: 152.525 bits (384), Expect = 1.943e-37
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGGKA+LTEGCSFR+KGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of GR408393 vs. TAIR peptide
Match: AT2G45710.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr2:18831243-18831999 FORWARD LENGTH=84)

HSP 1 Score: 144.821 bits (364), Expect = 4.052e-35
Identity = 68/84 (80.95%), Postives = 71/84 (84.52%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            MVLQNDIDLLNPPA            VQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGGKA+LTEGCSFRKK
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of GR408393 vs. TAIR peptide
Match: AT5G47930.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr5:19406423-19407329 REVERSE LENGTH=84)

HSP 1 Score: 144.436 bits (363), Expect = 5.292e-35
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKK 325
            MVLQNDIDLL+PP             VQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARL EGCSFRKK
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of GR408393 vs. TAIR peptide
Match: AT3G61111.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr3:22613230-22613919 REVERSE LENGTH=86)

HSP 1 Score: 125.561 bits (314), Expect = 2.544e-29
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 2

Query:   74 MVLQNDIDLLNPPAXXXXXXXXXXXXVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 331
            MVLQNDIDLLNPPA            V SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGGKA+LT GCSFRK  D
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGKCQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of GR408393 vs. SwissProt
BLAST of GR408393 vs. TrEMBL
BLAST of GR408393 vs. TAIR peptide

BLAST of GR408393 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS272_ARATH	1.921e-36	82.56	40S ribosomal protein S27-2 OS=Arabidopsis thalian...	[more]
RS27_HORVU	2.774e-35	82.56	40S ribosomal protein S27 OS=Hordeum vulgare GN=RP...	[more]
RS271_ARATH	4.006e-34	80.95	40S ribosomal protein S27-1 OS=Arabidopsis thalian...	[more]
RS273_ARATH	5.232e-34	82.14	40S ribosomal protein S27-3 OS=Arabidopsis thalian...	[more]
RS27_CHLRE	3.509e-30	72.09	40S ribosomal protein S27 OS=Chlamydomonas reinhar...	[more]
RS27_SCHPO	1.526e-25	67.95	40S ribosomal protein S27 OS=Schizosaccharomyces p...	[more]
RS27_NEUCR	1.687e-24	66.67	40S ribosomal protein S27 OS=Neurospora crassa GN=...	[more]
RS27_XENLA	2.203e-24	67.53	40S ribosomal protein S27 OS=Xenopus laevis GN=rps...	[more]
RS27_RAT	2.203e-24	67.53	40S ribosomal protein S27 OS=Rattus norvegicus GN=...	[more]
RS27_MOUSE	2.203e-24	67.53	40S ribosomal protein S27 OS=Mus musculus GN=Rps27...	[more]

BLAST of GR408393 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FN54_MEDTR	4.383e-36	86.05	Ribosomal protein S27 OS=Medicago truncatula PE=3 ...	[more]
C6SWV6_SOYBN	9.765e-36	84.88	Ribosomal protein S27 OS=Glycine max PE=3 SV=1	[more]
B7FHA3_MEDTR	9.765e-36	84.88	Ribosomal protein S27 OS=Medicago truncatula PE=3 ...	[more]
B9RG16_RICCO	2.175e-35	83.72	Ribosomal protein S27 OS=Ricinus communis GN=RCOM_...	[more]
C6SYW6_SOYBN	2.841e-35	83.72	Ribosomal protein S27 OS=Glycine max PE=3 SV=1	[more]
D7LS57_ARALY	6.329e-35	81.40	ARS27A OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
A5APU3_VITVI	1.080e-34	82.56	Ribosomal protein S27 OS=Vitis vinifera GN=VITISV_...	[more]
A1YMY0_BRACM	1.080e-34	85.71	Ribosomal protein S27 OS=Brassica campestris PE=3 ...	[more]
Q3HVK9_SOLTU	1.410e-34	81.40	Ribosomal protein S27 OS=Solanum tuberosum PE=3 SV...	[more]
D7SVF6_VITVI	1.842e-34	76.04	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of GR408393 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G61110.1	1.943e-37	82.56	\| Symbols: ARS27A, RS27A \| ribosomal protein S27 \|...	[more]
AT2G45710.1	4.052e-35	80.95	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT5G47930.1	5.292e-35	82.14	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT3G61111.1	2.544e-29	69.77	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 31..110 score: 5.6
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 54..108 score: 5.3
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 62..94 score
IPR011332	Ribosomal protein, zinc-binding domain	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 54..108 score: 5.1
None	No IPR available	GENE3D	2.20.25.100	no description	coord: 54..108 score: 7.5
None	No IPR available	SEG	seg	seg	coord: 39..50 score
None	No IPR available	SEG	seg	seg	coord: 4..16 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR408393 ID=GR408393; Name=GR408393; organism=Cicer arietinum; type=EST; length=682bp
GCTTTCGGATTTTCGCAGTCGCAGCACCCTTCCAACCACAACAGTTTCTA
GGGTTTTGCGATTTCATCACACAATGGTTCTTCAAAACGACATTGATCTG
TTGAATCCACCAGCCGAACTCGAGAAGAGGAAGCACAAGCTCAAGCGCCT
CGTTCAATCCCCCAATTCATTCTTCATGGATGTCAAATGTCAAGGTTGCT
TCAATATAACTACTGTATTTAGTCACTCCCAAACTGTCGTGGTTTGCGGT
AATTGCCAGACAGTTTTGTGCCAGCCAACTGGTGGCAAAGCAAGGCTAAC
TGAGGGATGCTCTTTCAGGAAGAAGGGAGATTAGTGTTGATTTCTAATAA
TGAAATTGAAATTTTGTCTTATTGGATAATATTATGTTTTTATATATTAA
GTAGTTTGTGTTGTGCTGAATGAAACTGTAATGCATTTGTTCTCTTCTCG
ATGAGAAGATACTTAAGTTAATGGTATTTATTTAATTTGGTTGTATGACA
TTATATCATTACCTCTAATTTAAAGTTTAGCAATTTATTTGATATGTTGG
TTTTTGCCTTGTTTGATACTGTATTTTATTTTTGTTGGGAAGCCTCTGAT
CCAGCACGGGCTGTGTATGGCTGCATGTGTCATATCTTGTTTGTATAGAT
GCTAGCCTTATGGCTTTTTGAGGATATGTCAT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_eS27
IPR011332	Ribosomal_zn-bd

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