HO062937

EST Overview


Name	HO062937
Unique Name	HO062937
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	504

Libraries


Library Name	Type
LIBEST_026409 Chickpea drought stressed cDNA SSH library AB2	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO062937 vs. SwissProt
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.350e-12
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   74 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125

HSP 2 Score: 27.7202 bits (60), Expect = 3.350e-12
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   57 SLPFQQCKHHISTVDC 72

[Close]

BLAST of HO062937 vs. TrEMBL
Match: C6TFP4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.713e-14
Identity = 35/52 (67.31%), Postives = 37/52 (71.15%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P GVNAGMLV V G  QLAGEQH  KF + F LIP PQGS+YV  DIF  NY
Sbjct:   71 PSGVNAGMLVFVSGNLQLAGEQHTLKFSQMFHLIPTPQGSYYVLNDIFRLNY 122

HSP 2 Score: 33.113 bits (74), Expect = 1.713e-14
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+CHHS +TVDC
Sbjct:   54 SLPFQQCHHSISTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: B7FLL8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.398e-13
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G N GMLV V G  QLAGEQ+A KF + F L+P PQGS+YV  DIF  NY
Sbjct:   71 PSGANGGMLVFVSGNLQLAGEQYALKFSQMFHLMPTPQGSYYVMNDIFRLNY 122

HSP 2 Score: 35.039 bits (79), Expect = 1.398e-13
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = -3

Query:  440 TFPFQRCHHSFTTVDCHLWGS 502
            + PFQ+CHHS TTVDC   G+
Sbjct:   54 SLPFQQCHHSITTVDCQPSGA 74

[Close]

BLAST of HO062937 vs. TrEMBL
Match: A5BM29_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001831 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.924e-12
Identity = 33/52 (63.46%), Postives = 35/52 (67.31%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G   GMLV V G  QLAGEQHA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 122

HSP 2 Score: 31.5722 bits (70), Expect = 1.924e-12
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C HS TTVDC
Sbjct:   54 SLPFQQCQHSITTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: B9RMD1_RICCO (Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_1079720 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.564e-11
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G   GMLV V G  +L GEQHA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPAGGMLVFVSGNLKLTGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 122

HSP 2 Score: 31.5722 bits (70), Expect = 1.564e-11
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C HS TTVDC
Sbjct:   54 SLPFQQCQHSITTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: B3TLR5_ELAGV (Nuclear transport factor 2 OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.641e-11
Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G   GMLV V G  QLAGEQH+ KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPAGGMLVFVSGSLQLAGEQHSLKFSQMFHLMPTPQGSFYVLNDIFRLNY 122

HSP 2 Score: 28.4906 bits (62), Expect = 2.641e-11
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   54 SLPFQQCQHQISTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: A1YN06_BRACM (Putative nuclear transport factor 2 OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.641e-11
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 122

HSP 2 Score: 28.4906 bits (62), Expect = 2.641e-11
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H+ +TVDC
Sbjct:   54 SLPFQQCKHNISTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: A8MS55_ARATH (Uncharacterized protein At1g27970.2 OS=Arabidopsis thaliana GN=At1g27970 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.292e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = -2

Query:  303 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVW 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF W
Sbjct:   74 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFSW 123

HSP 2 Score: 27.7202 bits (60), Expect = 3.292e-11
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   57 SLPFQQCKHHISTVDC 72

[Close]

BLAST of HO062937 vs. TrEMBL
Match: Q8LC75_ARATH (Nuclear transport factor 2, putative OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.458e-11
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 122

HSP 2 Score: 27.7202 bits (60), Expect = 4.458e-11
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   54 SLPFQQCKHHISTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: A9PDH2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_554771 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.776e-11
Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G   GMLV V G  QLAGEQHA KF + F L+P PQGS+YV  DIF  NY
Sbjct:   71 PSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSYYVYNDIFRLNY 122

HSP 2 Score: 26.9498 bits (58), Expect = 9.776e-11
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = -3

Query:  455 PFQRCHHSFTTVDC 496
            PF +C H  TTVDC
Sbjct:   56 PFHQCKHHITTVDC 69

[Close]

BLAST of HO062937 vs. TrEMBL
Match: D7KBV8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472998 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.270e-10
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G  +GMLV V G  QLAGE+H  KF + F L+P PQGSFYV  DIF  NY
Sbjct:   71 PSGPASGMLVFVSGNLQLAGEEHTLKFSQMFHLMPTPQGSFYVFNDIFRLNY 122

HSP 2 Score: 27.7202 bits (60), Expect = 1.270e-10
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   54 SLPFQQCKHHISTVDC 69

[Close]

BLAST of HO062937 vs. TAIR peptide
Match: AT1G27970.2 (| Symbols: NTF2B | nuclear transport factor 2B | chr1:9746921-9748306 FORWARD LENGTH=134)

HSP 1 Score: 63.929 bits (154), Expect = 2.784e-13
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = -2

Query:  303 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVW 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF W
Sbjct:   74 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFSW 123

HSP 2 Score: 27.7202 bits (60), Expect = 2.784e-13
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   57 SLPFQQCKHHISTVDC 72

[Close]

BLAST of HO062937 vs. TAIR peptide
Match: AT1G27970.1 (| Symbols: NTF2B | nuclear transport factor 2B | chr1:9746921-9747787 FORWARD LENGTH=126)

HSP 1 Score: 63.5438 bits (153), Expect = 3.632e-13
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G  +GMLV V G  QLAGE+HA KF + F L+P PQGSFYV  DIF  NY
Sbjct:   74 PSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125

HSP 2 Score: 27.7202 bits (60), Expect = 3.632e-13
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3

Query:  455 TFPFQRCHHSFTTVDC 502
            + PFQ+C H  +TVDC
Sbjct:   57 SLPFQQCKHHISTVDC 72

[Close]

BLAST of HO062937 vs. TAIR peptide
Match: AT1G27310.1 (| Symbols: NTF2A | nuclear transport factor 2A | chr1:9484615-9485790 REVERSE LENGTH=122)

HSP 1 Score: 52.373 bits (124), Expect = 1.909e-10
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = -2

Query:  297 PLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 452
            P G   GMLV V G  QLAGEQHA KF + F LI   QG++YV  DIF  NY
Sbjct:   71 PSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

HSP 2 Score: 29.6462 bits (65), Expect = 1.909e-10
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = -3

Query:  455 PFQRCHHSFTTVDC 496
            PFQ+C H+ TTVDC
Sbjct:   56 PFQQCKHNITTVDC 69

[Close]

BLAST of HO062937 vs. TAIR peptide
Match: AT1G11570.2 (| Symbols: NTL | NTF2-like | chr1:3883280-3883956 FORWARD LENGTH=132)

HSP 1 Score: 46.2098 bits (108), Expect = 2.726e-7
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = -2

Query:  297 SPLGVNAGMLVLVRGIFQLAGEQHAFKFIRRFLLIPPPQGSFYV*KDIFVWNY 455
            S  G   G+LV V G  QL GE H  +F + F LIP  QGSF+V  ++F  NY
Sbjct:   79 SMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRLNY 131

HSP 2 Score: 25.0238 bits (53), Expect = 2.726e-7
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = -3

Query:  458 PFQRCHHSFTTVD 496
            PF +CHH  +TVD
Sbjct:   62 PFDQCHHLISTVD 74

The following BLAST results are available for this feature:

BLAST of HO062937 vs. SwissProt
BLAST of HO062937 vs. TrEMBL
BLAST of HO062937 vs. TAIR peptide

BLAST of HO062937 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
NTF2_ARATH	3.350e-12	61.54	Nuclear transport factor 2 OS=Arabidopsis thaliana...	[more]

BLAST of HO062937 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TFP4_SOYBN	1.713e-14	67.31	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FLL8_MEDTR	1.398e-13	61.54	Putative uncharacterized protein OS=Medicago trunc...	[more]
A5BM29_VITVI	1.924e-12	63.46	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9RMD1_RICCO	1.564e-11	59.62	Nuclear transport factor, putative OS=Ricinus comm...	[more]
B3TLR5_ELAGV	2.641e-11	61.54	Nuclear transport factor 2 OS=Elaeis guineensis va...	[more]
A1YN06_BRACM	2.641e-11	61.54	Putative nuclear transport factor 2 OS=Brassica ca...	[more]
A8MS55_ARATH	3.292e-11	62.00	Uncharacterized protein At1g27970.2 OS=Arabidopsis...	[more]
Q8LC75_ARATH	4.458e-11	61.54	Nuclear transport factor 2, putative OS=Arabidopsi...	[more]
A9PDH2_POPTR	9.776e-11	61.54	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7KBV8_ARALY	1.270e-10	59.62	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of HO062937 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT1G27970.2	2.784e-13	62.00	\| Symbols: NTF2B \| nuclear transport factor 2B \| c...	[more]
AT1G27970.1	3.632e-13	61.54	\| Symbols: NTF2B \| nuclear transport factor 2B \| c...	[more]
AT1G27310.1	1.909e-10	57.69	\| Symbols: NTF2A \| nuclear transport factor 2A \| c...	[more]
AT1G11570.2	2.726e-7	47.17	\| Symbols: NTL \| NTF2-like \| chr1:3883280-3883956 ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 16..21 score
IPR018222	Nuclear transport factor 2, Eukaryote	PROFILE	PS50177	NTF2_DOMAIN	coord: 22..60 score: 9

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO062937 ID=HO062937; Name=HO062937; organism=Cicer arietinum; type=EST; length=504bp
GCATAAAATCAAATACTCCTCCAGCATAATAAAAATATTGATACACGCAT
AAACCAAATTTTAAATGTAAATTGAATGGGATGTTTGGAGCCCATACATT
GAAGTTTTCAACCCACAATGTTCATTGATTTTTAACAATTTTTCTTTCAA
AGAGTTTTAAACACAAAATTCCAAACAGGAGGCACACGATTAAGAATTAA
CACAAAACAAAAGAACCCATTTTTAATTAAAAATGTCTGAAGCAAAACAG
CTGCCGGGAAACTTCTACATTTCACAGTCTATCTTCTTCTTCATGGATAA
TTCCAAACGAAAATGTCCTTTCACACATAAAAACTTCCCTGGGGGGGTGG
GATCAAAAGAAACCTCCGAATGAACTTAAAGGCATGTTGTTCCCCCGCCA
ACTGGAAAATACCCCTGACCAAAACCAACATGCCCGCGTTGACCCCCAAA
GGTGACAATCCACGGTGGTGAAGGAGTGATGGCACCGCTGGAAAGGGAAA
GTGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR018222	Nuclear_transport_factor_2_euk

Search form