GR390778

EST Overview


Name	GR390778
Unique Name	GR390778
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	360

Libraries


Library Name	Type
LIBEST_024777 ICC1882 dehydration stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR390778 vs. SwissProt
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.714e-7
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +G+ +  R     R+W+YIK +NLQ+PN+K  + CDEKL+ ++LGK   ++ E+ +++  H   EPK
Sbjct:  134 LGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STNMFEMHKILASHM-TEPK 197

[Close]

BLAST of GR390778 vs. TrEMBL
Match: Q1PCH7_SOLCH (SWIb domain-containing protein OS=Solanum chacoense GN=SWIb2 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.905e-25
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQT RL CF RVWSYIK NNLQDPN+KN+VNCDEKLK +LLGKPQV+L ELP LIK HFPK+P+
Sbjct:   34 MGQSQTSRLGCFKRVWSYIKENNLQDPNNKNLVNCDEKLKSVLLGKPQVELTELPTLIKLHFPKQPR 100

[Close]

BLAST of GR390778 vs. TrEMBL
Match: C6T3J2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.713e-25
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CF  +WSYIKTNNLQD N+KNVVNCDEKLK ILLGKPQV+LAELP LIK HFPKEPK
Sbjct:   34 VGQSQISRLGCFKCIWSYIKTNNLQDQNNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]

BLAST of GR390778 vs. TrEMBL
Match: B9ID25_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_575762 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.931e-24
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ   L CFMRVWSYIKTNNLQDPN+KNVVNCDEKLK ILLGK QV+L ELP LIK HFPK+ K
Sbjct:   34 VGQSQISHLGCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKQQVELVELPALIKLHFPKQKK 100

[Close]

BLAST of GR390778 vs. TrEMBL
Match: D7MF52_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_354113 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.999e-24
Identity = 53/67 (79.10%), Postives = 57/67 (85.07%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CFMRVWSYIKTNNLQDP +KNVV CDEKLK ILLGK +V+L ELP LIK HFPKEPK
Sbjct:  254 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVELPSLIKLHFPKEPK 320

[Close]

BLAST of GR390778 vs. TrEMBL
Match: D7T832_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037716001 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.114e-23
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CFMRVWSYIK NNLQDPN+KNVV CD+KL+ ILLGKP+V+LAELP LIK HFPKE K
Sbjct:   34 VGQSQISRLGCFMRVWSYIKANNLQDPNNKNVVICDDKLRSILLGKPRVELAELPALIKLHFPKERK 100

[Close]

BLAST of GR390778 vs. TrEMBL
Match: Q9SZ21_ARATH (At4g26810 OS=Arabidopsis thaliana GN=F10M23.150 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.428e-23
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CFMRVWSYIKTNNLQDP +KNVV CDEKLK ILLGK +V+L +LP LIK HFPKE K
Sbjct:   34 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of GR390778 vs. TrEMBL
Match: Q6K448_ORYSJ (Os09g0133000 protein OS=Oryza sativa subsp. japonica GN=P0406E03.15 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.173e-19
Identity = 43/66 (65.15%), Postives = 57/66 (86.36%), Query Frame = -3

Query:  158 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 355
            GQSQ   LS F+RVWS+IK+NNLQDP+++N+VNCD+KLK +LLG+ +V+L+ELP L+K HFPK PK
Sbjct:   36 GQSQMSHLSFFLRVWSHIKSNNLQDPSNRNIVNCDDKLKTVLLGRSKVELSELPMLVKLHFPKFPK 101

[Close]

BLAST of GR390778 vs. TrEMBL
Match: A2YYP5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30466 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.173e-19
Identity = 43/66 (65.15%), Postives = 57/66 (86.36%), Query Frame = -3

Query:  158 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 355
            GQSQ   LS F+RVWS+IK+NNLQDP+++N+VNCD+KLK +LLG+ +V+L+ELP L+K HFPK PK
Sbjct:   36 GQSQMSHLSFFLRVWSHIKSNNLQDPSNRNIVNCDDKLKTVLLGRSKVELSELPMLVKLHFPKFPK 101

[Close]

BLAST of GR390778 vs. TrEMBL
Match: B6T012_MAIZE (SWIb domain-containing protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.139e-18
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = -3

Query:  158 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 355
            GQSQ   +S F+RVWSYIK N LQDP +KN+V CDEKLK +LLG+ +V L+ELP ++K HFPK PK
Sbjct:   33 GQSQMSHISFFLRVWSYIKDNKLQDPTNKNIVKCDEKLKTVLLGRSKVQLSELPMIVKLHFPKLPK 98

[Close]

BLAST of GR390778 vs. TrEMBL
Match: C5YGC2_SORBI (Putative uncharacterized protein Sb06g016360 OS=Sorghum bicolor GN=Sb06g016360 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.657e-17
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = -3

Query:  158 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 355
            G+SQ   +S F+RVWSYIK N LQDP ++N+V CDEKLK +LLGK +V+L+ELP ++K HFP+ P+
Sbjct:   33 GRSQMSHISFFLRVWSYIKDNKLQDPTNRNIVKCDEKLKTVLLGKSKVELSELPMIVKLHFPRFPR 98

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT4G26810.2 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr4:13492247-13492649 REVERSE LENGTH=106)

HSP 1 Score: 109.768 bits (273), Expect = 3.669e-25
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CFMRVWSYIKTNNLQDP +KNVV CDEKLK ILLGK +V+L +LP LIK HFPKE K
Sbjct:   34 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT4G26810.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr4:13492247-13492649 REVERSE LENGTH=106)

HSP 1 Score: 109.768 bits (273), Expect = 3.669e-25
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = -3

Query:  158 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKEPK 358
            +GQSQ  RL CFMRVWSYIKTNNLQDP +KNVV CDEKLK ILLGK +V+L +LP LIK HFPKE K
Sbjct:   34 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT2G35605.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr2:14946161-14947027 FORWARD LENGTH=109)

HSP 1 Score: 65.0846 bits (157), Expect = 1.036e-11
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = -3

Query:  167 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPK 358
            IG+++  R +   ++W YIK NNLQ+P +K  + CDE+LK I  GK  V   E+ +L+  HFPK
Sbjct:   44 IGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPK 107

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT1G31760.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr1:11372602-11373414 REVERSE LENGTH=112)

HSP 1 Score: 63.929 bits (154), Expect = 2.309e-11
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = -3

Query:  167 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPK 355
            G+ +  R S   +VW Y+K +NLQ+P +K  ++CD+KLK I  GK +V + E+ +L+  HFPK
Sbjct:   48 GERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPK 110

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT4G34290.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr4:16410883-16412122 FORWARD LENGTH=144)

HSP 1 Score: 59.6918 bits (143), Expect = 4.355e-10
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = -3

Query:  173 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHF 358
            +G  +  R     R+W+YIK ++LQDP +K  + CDEKLK I  GK +V   E+ +LI  HF
Sbjct:   82 VGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHF 143

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT2G14880.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr2:6393686-6394841 REVERSE LENGTH=141)

HSP 1 Score: 56.6102 bits (135), Expect = 3.687e-9
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = -3

Query:  173 RLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHF 337
            R     R+W+YIK ++LQDP +K  + CDEKLK I  G+ +V   E+ +LI  HF
Sbjct:   86 RTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHF 140

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT3G03590.1 (| Symbols: | SWIB/MDM2 domain superfamily protein | chr3:865341-866669 REVERSE LENGTH=143)

HSP 1 Score: 55.8398 bits (133), Expect = 6.288e-9
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = -3

Query:  167 IGQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPK 358
            +G  +T R      +W+YIK+++LQ+P  K  + CDE LK I  GK +V   E+ +L+  HF K
Sbjct:   78 LGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of GR390778 vs. TAIR peptide
Match: AT4G22360.1 (| Symbols: | SWIB complex BAF60b domain-containing protein | chr4:11807811-11809660 FORWARD LENGTH=385)

HSP 1 Score: 49.2914 bits (116), Expect = 5.886e-7
Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = -3

Query:  164 GQSQTXRLSCFMRVWSYIKTNNLQDPNSKNVVNCDEKLKGILLGKPQVDLAELPELIKXHFPKE 355
            G+++        RVW YIK NNL+DP +   + CDEKL+  LLG   +    + E+++ H  K+
Sbjct:  322 GETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRD-LLGCESISAVGINEMLRRHMYKQ 384

The following BLAST results are available for this feature:

BLAST of GR390778 vs. SwissProt
BLAST of GR390778 vs. TrEMBL
BLAST of GR390778 vs. TAIR peptide

BLAST of GR390778 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
UAF30_YEAST	8.714e-7	38.81	Upstream activation factor subunit UAF30 OS=Saccha...	[more]

BLAST of GR390778 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q1PCH7_SOLCH	5.905e-25	77.61	SWIb domain-containing protein OS=Solanum chacoens...	[more]
C6T3J2_SOYBN	7.713e-25	80.60	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9ID25_POPTR	2.931e-24	79.10	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7MF52_ARALY	4.999e-24	79.10	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D7T832_VITVI	1.114e-23	77.61	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q9SZ21_ARATH	9.428e-23	76.12	At4g26810 OS=Arabidopsis thaliana GN=F10M23.150 PE...	[more]
Q6K448_ORYSJ	2.173e-19	65.15	Os09g0133000 protein OS=Oryza sativa subsp. japoni...	[more]
A2YYP5_ORYSI	2.173e-19	65.15	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B6T012_MAIZE	3.139e-18	63.64	SWIb domain-containing protein OS=Zea mays PE=4 SV...	[more]
C5YGC2_SORBI	2.657e-17	59.09	Putative uncharacterized protein Sb06g016360 OS=So...	[more]

BLAST of GR390778 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 8


Match Name	E-value	Identity	Description
AT4G26810.2	3.669e-25	76.12	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT4G26810.1	3.669e-25	76.12	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT2G35605.1	1.036e-11	43.75	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT1G31760.1	2.309e-11	42.86	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT4G34290.1	4.355e-10	43.55	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT2G14880.1	3.687e-9	45.45	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT3G03590.1	6.288e-9	39.06	\| Symbols: \| SWIB/MDM2 domain superfamily protein...	[more]
AT4G22360.1	5.886e-7	35.94	\| Symbols: \| SWIB complex BAF60b domain-containin...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	1.10.245.10	no description	coord: 1..65 score: 2.6
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 1..62 score: 6.8
IPR003121	SWIB/MDM2 domain	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 1..64 score: 3.1
IPR019835	SWIB domain	SMART	SM00151	no description	coord: 3..67 score: 0.0
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 (BAF60)	coord: 1..61 score: 2.4

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR390778 ID=GR390778; Name=GR390778; organism=Cicer arietinum; type=EST; length=360bp
TGGCTTCNTAAATACAAAATTTATGAAATGCAAAATCCCGCAGCAATACA
GGACATTTTTAAGTTGGATTACATGTAATAAGATTAATCCATTCATACAG
CAAAAAGATTACTTCCCGATTTAGTGCTTCAACTGCTAGGCTCCTATACT
AATATCACTTTGGCTCTTTCGGAAAATGTANCTTGATAAGTTCTGGAAGT
TCTGCTAAATCAACCTGAGGTTTCCCAAGTAAAATACCTTTCAACTTCTC
ATCACAGTTCACCACATTCTTGCTATTTGGATCCTGGAGATTGTTGGTTT
TGATGTAAGACCAGACACGCATGAAGCAAGATAAACGANAAGTTTGAGAT
TGACCGATGA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

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