GR420839

EST Overview


Name	GR420839
Unique Name	GR420839
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	433

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR420839 vs. SwissProt
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.003e-14
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY 210
            + +NDPY +N WAEKLQAKDAIEFYG F     KSL+L  DLS ALLG RS R      WSA+
Sbjct:  112 VSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHR------WSAF 168

[Close]

BLAST of GR420839 vs. SwissProt
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.891e-13
Identity = 46/93 (49.46%), Postives = 51/93 (54.84%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + +NDP+ +N WAEKL AKDAIEFYG F     KSL L  DLS ALLG RSER      WSAY      KA+        F       ILGQI
Sbjct:  115 VSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSER------WSAYVEDGKVKAVNVEEAPSDFKVTGAEVILGQI 201

[Close]

BLAST of GR420839 vs. TrEMBL
Match: C6T2A9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.047e-18
Identity = 57/93 (61.29%), Postives = 59/93 (63.44%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + INDPYTMNAWAEKLQAKDAIEFYG F     KSLEL TDLSGALLGTRSER      WSAY      KAL              +TILGQI
Sbjct:  111 VAINDPYTMNAWAEKLQAKDAIEFYGDFDGSFHKSLELVTDLSGALLGTRSER------WSAYVVDGKVKALNVEEAPSDVKVSGADTILGQI 197

[Close]

BLAST of GR420839 vs. TrEMBL
Match: C6T073_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.047e-18
Identity = 57/93 (61.29%), Postives = 59/93 (63.44%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + INDPYTMNAWAEKLQAKDAIEFYG F     KSLEL TDLSGALLGTRSER      WSAY      KAL              +TILGQI
Sbjct:  111 VAINDPYTMNAWAEKLQAKDAIEFYGDFDGSFHKSLELVTDLSGALLGTRSER------WSAYVVDGKVKALNVEEAPSDVKVSGADTILGQI 197

[Close]

BLAST of GR420839 vs. TrEMBL
Match: B7FGM0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.285e-18
Identity = 56/93 (60.22%), Postives = 59/93 (63.44%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + +NDPYT+NAWAEKLQAKDAIEFYG F     KSLELTTDLSGALLGTRSER      WSAY      KAL               TILGQI
Sbjct:  113 VSVNDPYTVNAWAEKLQAKDAIEFYGDFDGSFHKSLELTTDLSGALLGTRSER------WSAYVVDGKVKALNVEEAPSDVKVSGAETILGQI 199

[Close]

BLAST of GR420839 vs. TrEMBL
Match: Q6KBB1_PEA (Mitochondrial peroxiredoxin OS=Pisum sativum GN=prx PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.788e-16
Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + INDPYT+NAWAEK+QAKDAIEFYG F     KSLELTTDLS  LLG RSER      WSAY      KAL               TILGQI
Sbjct:  113 VAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSER------WSAYVVDGKVKALNVEESPSDVKVSGAETILGQI 199

[Close]

BLAST of GR420839 vs. TrEMBL
Match: Q5JBR7_IPOBA (Peroxiredoxin OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.880e-15
Identity = 44/65 (67.69%), Postives = 47/65 (72.31%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAYKA 216
            + +NDPYTMN WAEKLQAKDAIEFYG F     KSL+LT DLSGALLG RS R      WSAY A
Sbjct:  107 VAVNDPYTMNGWAEKLQAKDAIEFYGDFDGSFHKSLDLTIDLSGALLGIRSHR------WSAYIA 165

[Close]

BLAST of GR420839 vs. TrEMBL
Match: B9IPE5_POPTR (Type IIF peroxiredoxin OS=Populus trichocarpa GN=PtrcPrxIIF PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.206e-15
Identity = 44/63 (69.84%), Postives = 47/63 (74.60%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY 210
            + +NDPYTMNAWAEKLQAKDAIEFYG F   + KSLEL  DLS ALLG RSER      WSAY
Sbjct:  117 VAVNDPYTMNAWAEKLQAKDAIEFYGDFDGSLHKSLELNKDLSVALLGHRSER------WSAY 173

[Close]

BLAST of GR420839 vs. TrEMBL
Match: D7T6T0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017908001 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.897e-14
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY 210
            + +NDPYT+NAWAEKL+AKDAIEFYG F     KSL+L  DLS ALLG RS R      WSAY
Sbjct:  115 VAVNDPYTLNAWAEKLEAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGPRSHR------WSAY 171

[Close]

BLAST of GR420839 vs. TrEMBL
Match: A9P0A0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.119e-13
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAYKALAPS*H*RRFLAQDVNTILGQI 282
            + +NDPY +N WAEKLQAK+AIEFYG F     KSLEL  DLS ALLG RS+R          K L        F      TILGQI
Sbjct:  107 VSVNDPYVVNGWAEKLQAKEAIEFYGDFDGRFHKSLELDLDLSAALLGHRSQRWSALVDDGKIKTLNVEKVPSEFKVSGAETILGQI 193

[Close]

BLAST of GR420839 vs. TrEMBL
Match: A9NZH6_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.119e-13
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAYKALAPS*H*RRFLAQDVNTILGQI 282
            + +NDPY +N WAEKLQAK+AIEFYG F     KSLEL  DLS ALLG RS+R          K L        F      TILGQI
Sbjct:  107 VSVNDPYVVNGWAEKLQAKEAIEFYGDFDGRFHKSLELDLDLSAALLGHRSQRWSALVDDGKIKTLNVEKVPSEFKVSGAETILGQI 193

[Close]

BLAST of GR420839 vs. TrEMBL
Match: B7E2T3_ORYSJ (cDNA clone:001-015-A12, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.140e-12
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY 210
            + +NDPY +N WAEKLQAKDAIEFYG F     KSL+L  DLS ALLG RS R      WSA+
Sbjct:  112 VSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHR------WSAF 168

[Close]

BLAST of GR420839 vs. TAIR peptide
Match: AT3G06050.1 (| Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | chr3:1826311-1827809 REVERSE LENGTH=201)

HSP 1 Score: 73.559 bits (179), Expect = 4.767e-14
Identity = 46/93 (49.46%), Postives = 51/93 (54.84%), Query Frame = 1

Query:   22 IPINDPYTMNAWAEKLQAKDAIEFYGGFHTLMGKSLELTTDLSGALLGTRSERCGRWKGWSAY------KALAPS*H*RRFLAQDVNTILGQI 282
            + +NDP+ +N WAEKL AKDAIEFYG F     KSL L  DLS ALLG RSER      WSAY      KA+        F       ILGQI
Sbjct:  115 VSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSER------WSAYVEDGKVKAVNVEEAPSDFKVTGAEVILGQI 201

The following BLAST results are available for this feature:

BLAST of GR420839 vs. SwissProt
BLAST of GR420839 vs. TrEMBL
BLAST of GR420839 vs. TAIR peptide

BLAST of GR420839 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
PRX2F_ORYSJ	6.003e-14	60.32	Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su...	[more]
PRX2F_ARATH	3.891e-13	49.46	Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha...	[more]

BLAST of GR420839 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T2A9_SOYBN	4.047e-18	61.29	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T073_SOYBN	4.047e-18	61.29	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FGM0_MEDTR	5.285e-18	60.22	Putative uncharacterized protein OS=Medicago trunc...	[more]
Q6KBB1_PEA	3.788e-16	56.99	Mitochondrial peroxiredoxin OS=Pisum sativum GN=pr...	[more]
Q5JBR7_IPOBA	1.880e-15	67.69	Peroxiredoxin OS=Ipomoea batatas PE=2 SV=1	[more]
B9IPE5_POPTR	3.206e-15	69.84	Type IIF peroxiredoxin OS=Populus trichocarpa GN=P...	[more]
D7T6T0_VITVI	7.897e-14	63.49	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9P0A0_PICSI	5.119e-13	50.57	Putative uncharacterized protein OS=Picea sitchens...	[more]
A9NZH6_PICSI	5.119e-13	50.57	Putative uncharacterized protein OS=Picea sitchens...	[more]
B7E2T3_ORYSJ	1.140e-12	60.32	cDNA clone:001-015-A12, full insert sequence OS=Or...	[more]

BLAST of GR420839 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G06050.1	4.767e-14	49.46	\| Symbols: PRXIIF, ATPRXIIF \| peroxiredoxin IIF \| ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10430	PEROXIREDOXIN-5	coord: 8..60 score: 1.4
None	No IPR available	PANTHER	PTHR10430:SF2	PEROXIREDOXIN	coord: 8..60 score: 1.4

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420839 ID=GR420839; Name=GR420839; organism=Cicer arietinum; type=EST; length=433bp
TGTTGTTTGTGTGGGGGATCGATTCCTATTAATGATCCATATACTATGAA
TGCTTGGGCTGAGAAGCTTCAAGCCAAAGATGCTATTGAATTTTACGGAG
GCTTCCACACTTTGATGGGAAAAAGCTTGGAATTAACTACTGATCTCTCT
GGTGCTTTGCTTGGAACCAGATCTGAAAGATGTGGTAGATGGAAAGGTTG
GTCGGCATATAAGGCTCTAGCTCCGTCTTAACATTGAAGAAGGTTTCTGG
CGCAGGATGTCAACACCATTTTAGGACAGATTTGTGTCTGTTGAAGTTTC
TGAATATAGCAAGTCTTTACTCTTCAATAATTTTATTTTTAGTGTTCATG
ATCAATGACGACCTGATTAAAATGTAGCTTCTTCCAGTTAAGAATTTATG
CTGAGCTGATAGAATGTTATTGTTCAAAAGGTT

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