GR391420

EST Overview


Name	GR391420
Unique Name	GR391420
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	721

Libraries


Library Name	Type
LIBEST_024777 ICC1882 dehydration stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR391420 vs. SwissProt
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.167e-28
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS G D SLEGN I   Q+DQPG IG VGNILGEQN NV+FMSVGRT  R++AIM IGV EEP+   LE +GGV AIEEFVF
Sbjct:  523 ISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 621

[Close]

BLAST of GR391420 vs. TrEMBL
Match: B9HVD9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1092826 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.701e-26
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L  VGS   D SLEGN I   Q+DQPG IG VGNILGEQN NVSFMSVGRT+RRR AIM IGV EEPN  +L+ +G VPAIEEFVF
Sbjct:  532 ISIEGKVKNGIPHLTQVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGRTARRRNAIMAIGVDEEPNLESLKKIGEVPAIEEFVF 630

[Close]

BLAST of GR391420 vs. TrEMBL
Match: D7KFI9_ARALY (3-phosphoglycerate dehydrogenase OS=Arabidopsis lyrata subsp. lyrata GN=PGDH PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.527e-26
Identity = 66/99 (66.67%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS G D SLEGN I   Q+DQPG IG VG+ILGEQN NV+FMSVGRT  R++AIM IGV EEP+   LE +GGV AIEEFVF
Sbjct:  512 ISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGHILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 610

[Close]

BLAST of GR391420 vs. TrEMBL
Match: B9HK69_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1084113 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.527e-26
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +G+ K G P L  VGS   D SLEGN I   Q+DQPG IG VGNILGEQN NVSFMSVGRT +RRKAIM IGV EEPN+  L+ +G VPAIEEFVF
Sbjct:  536 ISIEGRVKYGKPHLTRVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGRTVQRRKAIMAIGVDEEPNQETLKKIGEVPAIEEFVF 634

[Close]

BLAST of GR391420 vs. TrEMBL
Match: D7T447_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_18.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016122001 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.858e-26
Identity = 66/99 (66.67%), Postives = 73/99 (73.74%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS   D SLEGN I   Q+DQPG IG VGNILGE N NVSFMSVGRT +R +AIM IGV EEP+K  L+ +G VPAIEEFVF
Sbjct:  331 ISIEGKVKDGIPRLTCVGSFSVDVSLEGNLILCRQVDQPGMIGRVGNILGECNVNVSFMSVGRTVKRTRAIMAIGVDEEPDKDTLKKIGEVPAIEEFVF 429

[Close]

BLAST of GR391420 vs. TrEMBL
Match: A5C3X6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036580 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.340e-25
Identity = 66/99 (66.67%), Postives = 72/99 (72.73%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS   D SLEGN I   Q+DQPG IG VGNILGE N NVSFMSVGRT +R +AIM IGV EEP K  L+ +G VPAIEEFVF
Sbjct:  509 ISIEGKVKDGIPRLTCVGSFSVDVSLEGNLILCRQVDQPGMIGRVGNILGECNVNVSFMSVGRTVKRTRAIMAIGVDEEPXKDTLKKIGEVPAIEEFVF 607

[Close]

BLAST of GR391420 vs. TrEMBL
Match: C5YLQ3_SORBI (Putative uncharacterized protein Sb07g021980 OS=Sorghum bicolor GN=Sb07g021980 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.355e-24
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            I  +G+ K G P L  VG    D SLEGN I   QIDQPG IG VGNILG++N N+SFMSVGRT R ++AIM IGV EEP+K  LEN+G +PAIEEFVF
Sbjct:  518 IVLEGRVKYGVPHLTLVGPYEVDVSLEGNLILCRQIDQPGMIGKVGNILGQRNVNISFMSVGRTFRGKQAIMAIGVDEEPDKETLENIGAIPAIEEFVF 616

[Close]

BLAST of GR391420 vs. TrEMBL
Match: B9GNT1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1071977 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.606e-24
Identity = 57/100 (57.00%), Postives = 76/100 (76.00%), Query Frame = -2

Query:  253 QISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 552
            +I  +G+ K G P L  VGS G D S+EG+ +   Q+DQPG IG VGNILGE+N NV+FMSVGR + R++A+M+IGV EEP+K AL+ +G +PA+EEFVF
Sbjct:  496 EIKVEGRVKDGKPHLTKVGSFGVDVSMEGSLVLCRQVDQPGMIGSVGNILGEENVNVNFMSVGRIAPRKQAVMIIGVDEEPSKEALKRIGEIPAVEEFVF 595

[Close]

BLAST of GR391420 vs. TrEMBL
Match: A9NXI5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.606e-24
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            I  +GK K G P L  VG+   D SLEG+ I   Q DQPG IG VGNILGE+N NV+FMSVGR + R+KA+M IGV EEP+KGAL+ +G VPAIEEFV+
Sbjct:  521 IKVEGKVKGGIPHLSKVGAFSVDVSLEGSVILCRQTDQPGMIGTVGNILGEENVNVNFMSVGRIAPRKKAVMAIGVDEEPSKGALKKIGDVPAIEEFVY 619

[Close]

BLAST of GR391420 vs. TrEMBL
Match: B9R765_RICCO (D-3-phosphoglycerate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1589250 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.639e-23
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = -2

Query:  253 QISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 552
            +I  +G+ K G P L  VGS G D SLEG+ I   QIDQPG IG VG+ILGE+N NVSFM+VGR + R++A+M IGV EEPNK AL+ +G +P +EEFVF
Sbjct:  496 EIKVEGRVKEGKPHLTMVGSFGVDVSLEGSLILCRQIDQPGMIGKVGSILGEENVNVSFMTVGRIAPRKQAVMTIGVDEEPNKEALKRIGEIPLVEEFVF 595

[Close]

BLAST of GR391420 vs. TrEMBL
Match: B9SG91_RICCO (D-3-phosphoglycerate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1556820 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.227e-23
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +G+ K G P L  VGS   D SLEGN I   Q+DQPG IG VGNILGE N NVSFMSVGRT RR +AIM IGV EEP   AL  +G V AIEEFVF
Sbjct:  532 ISIEGRVKYGIPHLTRVGSFAVDVSLEGNLILCRQVDQPGMIGRVGNILGEHNVNVSFMSVGRTVRRNQAIMAIGVDEEPQGQALVKIGEVSAIEEFVF 630

[Close]

BLAST of GR391420 vs. TAIR peptide
Match: AT1G17745.2 (| Symbols: PGDH | D-3-phosphoglycerate dehydrogenase | chr1:6101157-6104979 FORWARD LENGTH=651)

HSP 1 Score: 124.405 bits (311), Expect = 6.234e-29
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS G D SLEGN I   Q+DQPG IG VGNILGEQN NV+FMSVGRT  R++AIM IGV EEP+   LE +GGV AIEEFVF
Sbjct:  550 ISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 648

[Close]

BLAST of GR391420 vs. TAIR peptide
Match: AT1G17745.1 (| Symbols: PGDH | D-3-phosphoglycerate dehydrogenase | chr1:6101157-6104979 FORWARD LENGTH=624)

HSP 1 Score: 124.405 bits (311), Expect = 6.234e-29
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = -2

Query:  253 ISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 549
            IS +GK K G P L CVGS G D SLEGN I   Q+DQPG IG VGNILGEQN NV+FMSVGRT  R++AIM IGV EEP+   LE +GGV AIEEFVF
Sbjct:  523 ISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 621

[Close]

BLAST of GR391420 vs. TAIR peptide
Match: AT3G19480.1 (| Symbols: | D-3-phosphoglycerate dehydrogenase | chr3:6752590-6754650 FORWARD LENGTH=588)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-22
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = -2

Query:  253 QISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 552
            +I  +G+ K G P L  VG  G D SLEG+ I   Q+DQPG IG V +ILG++N NVSFMSVGR +  ++A+M IGV E+P+K  L+ +G +PAIEEFVF
Sbjct:  486 EIKVEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILGDENVNVSFMSVGRIAPGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVF 585

[Close]

BLAST of GR391420 vs. TAIR peptide
Match: AT4G34200.1 (| Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603)

HSP 1 Score: 102.834 bits (255), Expect = 1.942e-22
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = -2

Query:  253 QISFDGKEK*GPPPLMCVGSLGGDGSLEGNPI*RGQIDQPGRIGLVGNILGEQNGNVSFMSVGRTSRRRKAIMVIGVGEEPNKGALENMGGVPAIEEFVF 552
            ++  +GK K G P L  VGS   D +LEG+ I   Q+DQPG IG VG+ILGE N NV+FMSVGR + R++AIM IGV + P+K  L+ +G +PA+EEFVF
Sbjct:  501 EVKVEGKVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQPGMIGTVGSILGESNVNVNFMSVGRIAPRKQAIMAIGVDDIPSKETLKKIGEIPAVEEFVF 600

The following BLAST results are available for this feature:

BLAST of GR391420 vs. SwissProt
BLAST of GR391420 vs. TrEMBL
BLAST of GR391420 vs. TAIR peptide

BLAST of GR391420 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
SERA_ARATH	6.167e-28	67.68	D-3-phosphoglycerate dehydrogenase, chloroplastic ...	[more]

BLAST of GR391420 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9HVD9_POPTR	2.701e-26	68.69	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7KFI9_ARALY	3.527e-26	66.67	3-phosphoglycerate dehydrogenase OS=Arabidopsis ly...	[more]
B9HK69_POPTR	3.527e-26	67.68	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7T447_VITVI	7.858e-26	66.67	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5C3X6_VITVI	1.340e-25	66.67	Putative uncharacterized protein OS=Vitis vinifera...	[more]
C5YLQ3_SORBI	7.355e-24	62.63	Putative uncharacterized protein Sb07g021980 OS=So...	[more]
B9GNT1_POPTR	9.606e-24	57.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9NXI5_PICSI	9.606e-24	61.62	Putative uncharacterized protein OS=Picea sitchens...	[more]
B9R765_RICCO	1.639e-23	59.00	D-3-phosphoglycerate dehydrogenase, putative OS=Ri...	[more]
B9SG91_RICCO	6.227e-23	64.65	D-3-phosphoglycerate dehydrogenase, putative OS=Ri...	[more]

BLAST of GR391420 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT1G17745.2	6.234e-29	67.68	\| Symbols: PGDH \| D-3-phosphoglycerate dehydrogena...	[more]
AT1G17745.1	6.234e-29	67.68	\| Symbols: PGDH \| D-3-phosphoglycerate dehydrogena...	[more]
AT3G19480.1	1.139e-22	54.00	\| Symbols: \| D-3-phosphoglycerate dehydrogenase \|...	[more]
AT4G34200.1	1.942e-22	54.00	\| Symbols: EDA9 \| D-3-phosphoglycerate dehydrogena...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002912	Amino acid-binding ACT	PFAM	PF01842	ACT	coord: 4..56 score: 2.6
None	No IPR available	GENE3D	3.30.70.260	no description	coord: 5..65 score: 3.9
None	No IPR available	SUPERFAMILY	55021	ACT-like	coord: 5..69 score: 4.2

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR391420 ID=GR391420; Name=GR391420; organism=Cicer arietinum; type=EST; length=721bp
AGTTTAAACCATGATACAAAATTCATACCCAAAAAAGAACCATGATACAA
AACTTATAGCAGAGGTCACACCCTACTAGCTGATTTTATTTTCAGCTAGT
TTTATTTATTCTCTACCATCCATTACTTCATAACATAAGCTATCATTTTC
CTACTACAATACTTCCATAAAGAGTACAAAATTAGACTCCTTAATTTTCC
CCCCAATCCATACCTATATATATTACTTATGAATCAACTTCTAAAGCTTG
AGAAACACAAACTCCTCAATAGCAGGCACCCCTCCCATATTCTCAAGAGC
CCCCTTATTTGGTTCTTCGCCGACACCGATCACCATAATAGCTTTCCTAC
GACGAGATGTTCTTCCGACACTCATAAAACTCACATTCCCATTCTGTTCC
CCTAAAATGTTGCCAACAAGGCCAATCCTTCCAGGCTGATCTATCTGTCC
GCGTCAAATCGGATTCCCTTCTAAACTCCCATCCCCGCCTAATGATCCGA
CACACATAAGGGGAGGGGGGCCCTATTTTTCTTTTCCATCAAAGCTTATC
TGAACACTCTCCGATCTAGAACTCGCGAATCTGGACCTCCCGCTTGATAC
CCGGGGATTCTGTCTTGATACCCATGCCTAATCCACCATGAATTCCCGCC
CGTCCTTGAGTTCCACCCCATGGAAAAGTCCCCCCCCCGCCCCATGCTTA
TTCTGCGCTACCCTTTACGTC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016597	amino acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002912	ACT_dom

Search form