GR393237
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR393237 vs. TrEMBL
Match: B9S5F6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1571370 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.505e-12 Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = -2 Query: 383 ARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 499 +RKGGCVR+++GLKPAAVRVEGFDCLNRDRQNSS+PA+A Sbjct: 137 SRKGGCVRMNYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 175
BLAST of GR393237 vs. TrEMBL
Match: A9PDT4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831131 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.965e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = -2 Query: 383 ARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 499 ARKGGC R+ FGLKPA VRVEGFDCLNRDRQNSS+PAVA Sbjct: 140 ARKGGCARMKFGLKPAMVRVEGFDCLNRDRQNSSIPAVA 178
BLAST of GR393237 vs. TrEMBL
Match: D7TT29_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031028001 PE=4 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.352e-12 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = -2 Query: 383 ARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 499 ARKGGCVR+ G KPAAVRVEGFDCLNRDRQNSS+PAVA Sbjct: 141 ARKGGCVRMKVGFKPAAVRVEGFDCLNRDRQNSSIPAVA 179
BLAST of GR393237 vs. TrEMBL
Match: Q1KUV3_9ROSI (Putative uncharacterized protein OS=Cleome spinosa PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11 Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = -2 Query: 383 KGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 493 KGGCVR+ FGLKPAAVRVEGFDCL+RDRQNSS+PA+A Sbjct: 164 KGGCVRMKFGLKPAAVRVEGFDCLDRDRQNSSIPAMA 200
BLAST of GR393237 vs. TrEMBL
Match: B9N232_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_670909 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = -2 Query: 383 GGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 490 GGCVR+ FGLKPA VRVEGFDCLNRDRQNSS+PAVA Sbjct: 143 GGCVRMKFGLKPAEVRVEGFDCLNRDRQNSSIPAVA 178
BLAST of GR393237 vs. TrEMBL
Match: Q1KUR8_9ROSI (Putative uncharacterized protein OS=Cleome spinosa PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.256e-11 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = -2 Query: 383 KGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 493 KGG VR+ FGLKPAAVRVEGFDCLNRDRQNSS+PA+A Sbjct: 162 KGGYVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 198
BLAST of GR393237 vs. TrEMBL
Match: D7KZI7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477491 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.839e-10 Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = -2 Query: 383 RARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 502 +A GGC R+ FG+KPA VRVEGFDCLNRDRQNSS+PAVA Sbjct: 120 KAGGGGCGRMKFGVKPATVRVEGFDCLNRDRQNSSIPAVA 159
BLAST of GR393237 vs. TrEMBL
Match: C6TFM5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.351e-10 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = -2 Query: 383 ARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 499 +RK GC R+ FGLKPAAVRVEGFDCL+RD QNS +PAVA Sbjct: 141 SRKAGCARMKFGLKPAAVRVEGFDCLSRDCQNSGIPAVA 179
BLAST of GR393237 vs. TrEMBL
Match: C6SVR4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.351e-10 Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = -2 Query: 383 ARKGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 499 +RKGGCVR++FGLKPAAVRVEGFDCLN+D QNS + VA Sbjct: 135 SRKGGCVRMTFGLKPAAVRVEGFDCLNKDCQNSRITVVA 173
BLAST of GR393237 vs. TrEMBL
Match: Q8LF93_ARATH (At3g02555 OS=Arabidopsis thaliana GN=At3g02555 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.530e-9 Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = -2 Query: 383 KGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 493 K GC R+ FG+KPA VRVEGFDCLNRDR NSS+PA+A Sbjct: 126 KSGCGRMKFGVKPATVRVEGFDCLNRDRPNSSIPAMA 162
BLAST of GR393237 vs. TAIR peptide
Match: AT3G02555.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:540024-540955 REVERSE LENGTH=162) HSP 1 Score: 64.3142 bits (155), Expect = 4.012e-11 Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = -2 Query: 383 KGGCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 493 K GC R+ FG+KPA VRVEGFDCLNRDR NSS+PA+A Sbjct: 126 KSGCGRMKFGVKPATVRVEGFDCLNRDRPNSSIPAMA 162
BLAST of GR393237 vs. TAIR peptide
Match: AT5G16110.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5261171-5262668 REVERSE LENGTH=244) HSP 1 Score: 63.1586 bits (152), Expect = 8.939e-11 Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = -2 Query: 383 GCVRVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 487 GCVR+ FGL AVRVEGFDCLNRDRQNSS+PA+A Sbjct: 210 GCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244
BLAST of GR393237 vs. TAIR peptide
Match: AT1G68490.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183) HSP 1 Score: 50.0618 bits (118), Expect = 7.831e-7 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = -2 Query: 383 RKGGCV-RVSFGLKPAAVRVEGFDCLNRDRQNSSVPAVA 496 RKGGCV R +FG P VRVEGFDCL+RD +N S+PA+A Sbjct: 146 RKGGCVVRGNFGNSPK-VRVEGFDCLDRDSRNCSIPALA 183 The following BLAST results are available for this feature:
BLAST of GR393237 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR393237 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR393237 ID=GR393237; Name=GR393237; organism=Cicer arietinum; type=EST; length=503bpback to top |