GR399288

EST Overview
NameGR399288
Unique NameGR399288
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length712
Libraries
Library NameType
LIBEST_024783 ICC4958 Slow drought stresses root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR399288 vs. TrEMBL
Match: B9HE70_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_764577 PE=4 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.256e-53
Identity = 101/152 (66.45%), Postives = 127/152 (83.55%), Query Frame = -3
Query:  255 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFIASPDL 710
            WL AL  +A  ++Y DKLVEIS++S+A+DGGS++GFSLSSA+V+F+LQKDGIHKAR  YKRFLALPHPGL  YR CIELE NLAS GDK+ L NARKLYE+ALATY Q+V LWQ+Y+ +E K+GTSE A AV  RA++TL+++  F+A+PDL
Sbjct:  491 WLMALNVFAKQKKYLDKLVEISLISVAKDGGSDDGFSLSSAIVNFMLQKDGIHKARKTYKRFLALPHPGLVLYRCCIELEVNLASVGDKDCLANARKLYESALATYGQDVTLWQNYHSMEIKLGTSETANAVCWRARKTLKNSAAFVAAPDL 642          
BLAST of GR399288 vs. TrEMBL
Match: B9RXI9_RICCO (Hepatocellular carcinoma-associated antigen, putative OS=Ricinus communis GN=RCOM_0903860 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.858e-46
Identity = 90/151 (59.60%), Postives = 119/151 (78.81%), Query Frame = -3
Query:  258 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFIASPD 710
            W+ A+K +A  + YF++LVE+S +S+A+DGG ++GFSL SA+V+ +LQK+GI  AR+ YKRFLALP PGLA  R CIELE NLAS  DK  L NARKLYE+ALAT++QNV LW+DY+ +E K+GTSE A AVY RA++TL+++   I SPD
Sbjct:  500 WVMAIKLFAVEKHYFEQLVEMSFISVAKDGGGDHGFSLPSAIVNCVLQKNGIQFARETYKRFLALPRPGLALLRTCIELEENLASIHDKECLGNARKLYESALATHDQNVRLWRDYHAMEIKLGTSETANAVYWRARKTLKNSASLITSPD 650          
BLAST of GR399288 vs. TrEMBL
Match: D7MDM0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913702 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.611e-44
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = -3
Query:  270 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFI 710
            WL ALKF+A  R Y DKLVE+SI+   +  GS++ FSLSS VV+F+L+  G H AR IYKRFLALP P L  Y++CIE+ETNL S GDK+ L NARKLY++A+A+Y Q+V LW++YY LETKMGTSE A  VY RA++TL+++ +FI
Sbjct:  505 WLMALKFFAHQRTYLDKLVEMSILLATKSHGSDHVFSLSSTVVNFVLETKGGHSARKIYKRFLALPGPSLVLYKDCIEIETNLISVGDKDGLSNARKLYDSAVASYSQDVELWKNYYLLETKMGTSETANGVYWRARKTLKESADFI 651          
BLAST of GR399288 vs. TrEMBL
Match: Q9M0I7_ARATH (At4g28200 OS=Arabidopsis thaliana GN=At4g28200 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.214e-43
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = -3
Query:  270 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFI 710
            WL A  F+A  R Y DKLVE+SI+S  +  GS++ FSL+S VV F+L+  G H AR IYKRFLALP P L  Y+ CIE+ETNL S GDK+ L NARKLY++A+A+Y Q+V LW++YY LETK+GTSE A  VY RA++TL ++ +FI
Sbjct:  501 WLMAFNFFAHQRTYLDKLVEMSILSATKSHGSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKDGLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNESADFI 647          
BLAST of GR399288 vs. TrEMBL
Match: Q56WH0_ARATH (Putative uncharacterized protein At4g28200 OS=Arabidopsis thaliana GN=At4g28200 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.214e-43
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = -3
Query:  270 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFI 710
            WL A  F+A  R Y DKLVE+SI+S  +  GS++ FSL+S VV F+L+  G H AR IYKRFLALP P L  Y+ CIE+ETNL S GDK+ L NARKLY++A+A+Y Q+V LW++YY LETK+GTSE A  VY RA++TL ++ +FI
Sbjct:  168 WLMAFNFFAHQRTYLDKLVEMSILSATKSHGSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKDGLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNESADFI 314          
BLAST of GR399288 vs. TrEMBL
Match: Q6YPH2_ORYSJ (Os02g0103900 protein OS=Oryza sativa subsp. japonica GN=OJA1212_C06.1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.615e-38
Identity = 76/144 (52.78%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  279 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDAT 710
            W  A+K ++  + YF+KLV+ +++SL+  GG++ G S+SSA+V +ILQ+DGI +AR +YKRFLALP P    ++ CIELETNLAS G+++SL+NARKLY+AAL  Y Q   LW++YY +E K+GTSE A A+Y RA++ L D++
Sbjct:  536 WHTAMKLFSHEKVYFEKLVKCAMLSLSSAGGNDCGASVSSAIVGWILQRDGIKQARKMYKRFLALPRPSFKFFQYCIELETNLASIGNQDSLVNARKLYDAALDLYPQERELWRNYYNMELKLGTSETANAIYWRARKVLGDSS 679          
BLAST of GR399288 vs. TrEMBL
Match: B8AGW0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05476 PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.615e-38
Identity = 76/144 (52.78%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  279 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDAT 710
            W  A+K ++  + YF+KLV+ +++SL+  GG++ G S+SSA+V +ILQ+DGI +AR +YKRFLALP P    ++ CIELETNLAS G+++SL+NARKLY+AAL  Y Q   LW++YY +E K+GTSE A A+Y RA++ L D++
Sbjct:  537 WHTAMKLFSHEKVYFEKLVKCAMLSLSSAGGNDCGASVSSAIVGWILQRDGIKQARKMYKRFLALPRPSFKFFQYCIELETNLASIGNQDSLVNARKLYDAALDLYPQERELWRNYYNMELKLGTSETANAIYWRARKVLGDSS 680          
BLAST of GR399288 vs. TrEMBL
Match: A3A269_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05012 PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.615e-38
Identity = 76/144 (52.78%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  279 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDAT 710
            W  A+K ++  + YF+KLV+ +++SL+  GG++ G S+SSA+V +ILQ+DGI +AR +YKRFLALP P    ++ CIELETNLAS G+++SL+NARKLY+AAL  Y Q   LW++YY +E K+GTSE A A+Y RA++ L D++
Sbjct:  564 WHTAMKLFSHEKVYFEKLVKCAMLSLSSAGGNDCGASVSSAIVGWILQRDGIKQARKMYKRFLALPRPSFKFFQYCIELETNLASIGNQDSLVNARKLYDAALDLYPQERELWRNYYNMELKLGTSETANAIYWRARKVLGDSS 707          
BLAST of GR399288 vs. TrEMBL
Match: C5X762_SORBI (Putative uncharacterized protein Sb02g000660 OS=Sorghum bicolor GN=Sb02g000660 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.625e-36
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = -3
Query:  267 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFIA 710
            W  A+K +   + +F+KLV+IS +SL+  GGS++G S+SSA+V + LQ+DG+  AR +YKRFLALP P L   + CIELE NLAS GD  +L NAR+LY++AL  Y Q   +W++YY LE KMGTSE A AVY RA++ L D+T   A
Sbjct:  532 WHMAMKLFFHDKVFFEKLVKISTLSLSLAGGSDSGASVSSAIVGWYLQRDGMKHARKMYKRFLALPRPSLKFMQYCIELEANLASLGDHGALTNARRLYDSALDLYPQEREVWRNYYNLELKMGTSESANAVYSRARKVLGDSTALTA 679          
BLAST of GR399288 vs. TrEMBL
Match: D5A8C7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.778e-28
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = -3
Query:  270 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFI 710
            W  A++F++S R YFD++++I    ++  GG   G +L+   + ++LQ  G+  AR++Y R LALP P L  Y++CI  E+ LA+ G + +  N  KLY++AL  YEQN+ LW DY   E K G S+ A++VY RA++TL+D+T FI
Sbjct:   29 WHMAMEFFSSQRAYFDQILDILGNVISVGGGGRGGATLACTALDWVLQNQGVRCAREMYNRLLALPGPSLDFYKHCITFESQLAAVGCEEAAQNMCKLYDSALKLYEQNIELWLDYCAEELKAGRSDAASSVYWRARKTLKDSTAFI 175          
BLAST of GR399288 vs. TAIR peptide
Match: AT4G28200.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:13987808-13990422 REVERSE LENGTH=648)

HSP 1 Score: 178.333 bits (451), Expect = 3.536e-45
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = -3
Query:  270 WLKALKFYASHRQYFDKLVEISIVSLARDGGSENGFSLSSAVVSFILQKDGIHKARDIYKRFLALPHPGLASYRNCIELETNLASTGDKNSLINARKLYEAALATYEQNVGLWQDYYRLETKMGTSEKATAVYCRAKRTLEDATEFI 710
            WL A  F+A  R Y DKLVE+SI+S  +  GS++ FSL+S VV F+L+  G H AR IYKRFLALP P L  Y+ CIE+ETNL S GDK+ L NARKLY++A+A+Y Q+V LW++YY LETK+GTSE A  VY RA++TL ++ +FI
Sbjct:  501 WLMAFNFFAHQRTYLDKLVEMSILSATKSHGSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKDGLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNESADFI 647          
The following BLAST results are available for this feature:
BLAST of GR399288 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9HE70_POPTR4.256e-5366.45Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RXI9_RICCO3.858e-4659.60Hepatocellular carcinoma-associated antigen, putat... [more]
D7MDM0_ARALY3.611e-4459.86Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9M0I7_ARATH5.214e-4357.82At4g28200 OS=Arabidopsis thaliana GN=At4g28200 PE=... [more]
Q56WH0_ARATH5.214e-4357.82Putative uncharacterized protein At4g28200 OS=Arab... [more]
Q6YPH2_ORYSJ8.615e-3852.78Os02g0103900 protein OS=Oryza sativa subsp. japoni... [more]
B8AGW0_ORYSI8.615e-3852.78Putative uncharacterized protein OS=Oryza sativa s... [more]
A3A269_ORYSJ8.615e-3852.78Putative uncharacterized protein OS=Oryza sativa s... [more]
C5X762_SORBI1.625e-3652.70Putative uncharacterized protein Sb02g000660 OS=So... [more]
D5A8C7_PICSI2.778e-2842.18Putative uncharacterized protein OS=Picea sitchens... [more]
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BLAST of GR399288 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G28200.13.536e-4557.82| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 43..62
score
NoneNo IPR availablePANTHERPTHR23271HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66coord: 1..148
score: 9.9
NoneNo IPR availablePANTHERPTHR23271:SF1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66coord: 1..148
score: 9.9
IPR003107RNA-processing protein, HAT helixSMARTSM00386no descriptioncoord: 50..82
score: 28coord: 90..122
score: 0

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR399288 ID=GR399288; Name=GR399288; organism=Cicer arietinum; type=EST; length=712bp
AATCCAATCCAAGTAACAAAATGAATTGTTTCATTTATCTTTTAAATTCA
TTAACTTAACATTTTCTGTTCTCCTTAAACTATCCACTTTAACAACTTTT
TTCCTCCGGCAACTGATGATGCCAAAGGCAACATGACATGATCAAATTCA
AAAAATTCTTAATGCACTAAGCTCCAGTTTATAAGAATATATAGGATACA
TTAATGTGGTCAAAATTGAACTGATAGAACATGATCTAAATTTACAAAGT
ATCACAAATCTGGAGAAGCAATAAATTCAGTAGCATCTTCAAGTGTTCTC
TTAGCACGGCAATACACAGCAGTAGCTTTTTCTGATGTTCCCATCTTGGT
CTCCAAGCGATAGTAATCTTGCCACAAGCCAACATTTTGCTCATAAGTTG
CAAGTGCAGCTTCGTATAATTTCCTGGCATTTATGAGACTATTTTTATCT
CCTGTTGATGCAAGGTTTGTTTCCAGCTCAATGCAGTTCCTATATGATGC
AAGGCCGGGATGTGGTAAAGCTAGAAATCGTTTATAGATATCTCTGGCCT
TGTGAATTCCATCTTTTTGAAGTATAAAACTTACAACGGCAGAAGAAAGG
GAAAATCCATTTTCACTGCCACCATCTCTGGCCAAGGAAACAATGGAGAT
CTCTACCAGTTTATCAAAGTACTGTCTGTGACTAGCATAGAATTTAAGGG
CCTTTAGCCACA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT