GR407181

EST Overview


Name	GR407181
Unique Name	GR407181
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	334

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR407181 vs. SwissProt
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+GFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83

[Close]

BLAST of GR407181 vs. SwissProt
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+GFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83

[Close]

BLAST of GR407181 vs. SwissProt
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.880e-10
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKA+RRKTTGTGRMRYLR+VPRRFK+ FREGTE
Sbjct:   20 VKALRRKTTGTGRMRYLRNVPRRFKTNFREGTE 52

[Close]

BLAST of GR407181 vs. SwissProt
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.380e-10
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+ FREGT+
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83

[Close]

BLAST of GR407181 vs. SwissProt
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.672e-7
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKA RRKTTGTGRM++L+ V RRF++GFREGT+
Sbjct:   51 VKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: D3GC12_9ROSI (Ribosomal protein L37 OS=Jatropha curcas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.080e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT+
Sbjct:   51 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: B9RQN1_RICCO (Ribosomal protein L37 OS=Ricinus communis GN=RCOM_1494440 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.080e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLRH+PRRFKSGFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRHLPRRFKSGFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: C6SZN4_SOYBN (Ribosomal protein L37 OS=Glycine max PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.143e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFKSGFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: Q7EZS5_ORYSJ (Putative uncharacterized protein OJ1163_G08.42 OS=Oryza sativa subsp. japonica GN=P0582D05.141 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   15 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 47

[Close]

BLAST of GR407181 vs. TrEMBL
Match: Q6Z8Y5_ORYSJ (Ribosomal protein L37 OS=Oryza sativa subsp. japonica GN=P0501G04.27 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: Q0J889_ORYSJ (Ribosomal protein L37 OS=Oryza sativa subsp. japonica GN=Os08g0128500 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: C5XS72_SORBI (Ribosomal protein L37 OS=Sorghum bicolor GN=Sb04g000910 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: B6UF11_MAIZE (Ribosomal protein L37 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   67 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 99

[Close]

BLAST of GR407181 vs. TrEMBL
Match: B6TLT4_MAIZE (Ribosomal protein L37 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 83

[Close]

BLAST of GR407181 vs. TrEMBL
Match: B6T4D2_MAIZE (Ribosomal protein L37 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.105e-10
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRY+RHVPRRFKS FREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTE 83

[Close]

BLAST of GR407181 vs. TAIR peptide
Match: AT3G16080.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr3:5454892-5455677 FORWARD LENGTH=95)

HSP 1 Score: 67.0106 bits (162), Expect = 2.700e-12
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+GFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83

[Close]

BLAST of GR407181 vs. TAIR peptide
Match: AT1G52300.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr1:19475213-19476152 REVERSE LENGTH=95)

HSP 1 Score: 67.0106 bits (162), Expect = 2.700e-12
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+GFREGTE
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83

[Close]

BLAST of GR407181 vs. TAIR peptide
Match: AT1G15250.1 (| Symbols: | Zinc-binding ribosomal protein family protein | chr1:5248825-5249381 REVERSE LENGTH=95)

HSP 1 Score: 62.3882 bits (150), Expect = 6.650e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = -2

Query:  235 VKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTE 333
            VKAIRRKTTGTGRMRYLR+VPRRFK+ FREGT+
Sbjct:   51 VKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83

The following BLAST results are available for this feature:

BLAST of GR407181 vs. SwissProt
BLAST of GR407181 vs. TrEMBL
BLAST of GR407181 vs. TAIR peptide

BLAST of GR407181 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
RL373_ARATH	3.402e-11	93.94	60S ribosomal protein L37-3 OS=Arabidopsis thalian...	[more]
RL372_ARATH	3.402e-11	93.94	60S ribosomal protein L37-2 OS=Arabidopsis thalian...	[more]
RL37_SOLLC	2.880e-10	87.88	60S ribosomal protein L37 (Fragment) OS=Solanum ly...	[more]
RL371_ARATH	8.380e-10	87.88	60S ribosomal protein L37-1 OS=Arabidopsis thalian...	[more]
RL371_DROME	8.672e-7	72.73	Probable 60S ribosomal protein L37-A OS=Drosophila...	[more]

BLAST of GR407181 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D3GC12_9ROSI	1.080e-10	96.97	Ribosomal protein L37 OS=Jatropha curcas PE=3 SV=1	[more]
B9RQN1_RICCO	1.080e-10	96.97	Ribosomal protein L37 OS=Ricinus communis GN=RCOM_...	[more]
C6SZN4_SOYBN	3.143e-10	96.97	Ribosomal protein L37 OS=Glycine max PE=3 SV=1	[more]
Q7EZS5_ORYSJ	4.105e-10	93.94	Putative uncharacterized protein OJ1163_G08.42 OS=...	[more]
Q6Z8Y5_ORYSJ	4.105e-10	93.94	Ribosomal protein L37 OS=Oryza sativa subsp. japon...	[more]
Q0J889_ORYSJ	4.105e-10	93.94	Ribosomal protein L37 OS=Oryza sativa subsp. japon...	[more]
C5XS72_SORBI	4.105e-10	93.94	Ribosomal protein L37 OS=Sorghum bicolor GN=Sb04g0...	[more]
B6UF11_MAIZE	4.105e-10	93.94	Ribosomal protein L37 OS=Zea mays PE=3 SV=1	[more]
B6TLT4_MAIZE	4.105e-10	93.94	Ribosomal protein L37 OS=Zea mays PE=3 SV=1	[more]
B6T4D2_MAIZE	4.105e-10	93.94	Ribosomal protein L37 OS=Zea mays PE=3 SV=1	[more]

BLAST of GR407181 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G16080.1	2.700e-12	93.94	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT1G52300.1	2.700e-12	93.94	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]
AT1G15250.1	6.650e-11	87.88	\| Symbols: \| Zinc-binding ribosomal protein famil...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 40..50 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR407181 ID=GR407181; Name=GR407181; organism=Cicer arietinum; type=EST; length=334bp
CTTTTTTTGTCCAACTCAAATTCTCATTAAACAACAAAATTGTCTTACAA
ACCTCATGTTGAAACACAATGCAACTATATATTAAAAGAGGAAATCAAAA
CAAAAGATAGAATAATGTTTAGAAGATCCATGTTCCAACACAAAAACTTA
GCTCCTAAAATTAATTAAACCAGCTGATAATGATCTTCCAAATTCTTATG
CAGAGGCAGCTGCTCCCTTCTTCCTGGGTGCAGCTTCGGTCCCTTCTCTG
AATCCACTTTTGAATCTGCGAGGCACATGACGCAAATACCTCATCCTACC
AGTTCCAGTAGTCTTTCTCCTAATAGCCTTAACA

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