GR409312

EST Overview


Name	GR409312
Unique Name	GR409312
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	674

Libraries


Library Name	Type
LIBEST_024779 ICC1882 Slow drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR409312 vs. SwissProt
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.700e-21
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPAM S +FQD+FLMEYND LLI+YLAM+TNCSS MN++VDKF+TAYDR+ RRGGRTAFM
Sbjct:  257 RLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of GR409312 vs. SwissProt
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.218e-19
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = -2

Query:  491 LPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 670
            LPA  S KF ++FLMEYND LL+SYLAM+TNC+S MN++VDKF+TAYD+H+RRGGRTAFM
Sbjct:  258 LPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSRRGGRTAFM 317

[Close]

BLAST of GR409312 vs. TrEMBL
Match: D7UAV8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_15.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00014869001 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.850e-23
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ SGKFQDDFLMEYNDTLLISYLAM TNCSS MN+LVDKF+TAYDRH+RRGGRTAF+
Sbjct:  257 RLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 317

[Close]

BLAST of GR409312 vs. TrEMBL
Match: B9ST91_RICCO (Signalosome subunit, putative OS=Ricinus communis GN=RCOM_0364210 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.489e-22
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ S KFQDDFLMEYNDTLLI+YLAM TNCSS MN+LVDKF+TAYDRH+RRGGRTAF+
Sbjct:  258 RLPAIESEKFQDDFLMEYNDTLLITYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 318

[Close]

BLAST of GR409312 vs. TrEMBL
Match: B9N5J2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_582521 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.489e-22
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ S KFQDDFLMEYNDTLLI+YLAM TNCSS MN+LVDKF+TAYDRH+RRGGRTAF+
Sbjct:  246 RLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 306

[Close]

BLAST of GR409312 vs. TrEMBL
Match: A9PFV1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.489e-22
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ S KFQDDFLMEYNDTLLI+YLAM TNCSS MN+LVDKF+TAYDRH+RRGGRTAF+
Sbjct:  134 RLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 194

[Close]

BLAST of GR409312 vs. TrEMBL
Match: Q1EC57_ARATH (At5g56280 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.500e-20
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPAM S +FQD+FLMEYND LLI+YLAM+TNCSS MN++VDKF+TAYDR+ RRGGRTAFM
Sbjct:  257 RLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of GR409312 vs. TrEMBL
Match: D7ML97_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495718 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.264e-20
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPAM S +F+D+FLMEYND LLI+YLAM+TNCSS MN+LVDKF+TAYDR+ RRGGRTAFM
Sbjct:  257 RLPAMESERFKDNFLMEYNDKLLITYLAMITNCSSNMNELVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of GR409312 vs. TrEMBL
Match: D5ABV8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.274e-20
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ S KFQDDFLMEYNDTLL++YLAM+TNCSS MN+L+DKF+TA+D+ +RRGGRT F+
Sbjct:  239 RLPAIESPKFQDDFLMEYNDTLLMAYLAMITNCSSTMNELIDKFNTAFDKQSRRGGRTTFL 299

[Close]

BLAST of GR409312 vs. TrEMBL
Match: A9RXW3_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_179257 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.620e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPA+ S KFQDDFLMEYNDTLL++YLA +T CSS MN+LVDKF+TAYD+ NRRGGRT F+
Sbjct:  238 RLPAIDSPKFQDDFLMEYNDTLLMTYLATITKCSSTMNELVDKFNTAYDKQNRRGGRTTFI 298

[Close]

BLAST of GR409312 vs. TrEMBL
Match: Q6ZKM2_ORYSJ (Putative COP9 complex subunit 6 OS=Oryza sativa subsp. japonica GN=OJ1118_A06.12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.981e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHN-RRGGRTAFM 673
            RLPAM S KFQDDFLMEYNDTLL++YLAM TNCSS MN+LV+KF+  Y+R   RRGGR AFM
Sbjct:  268 RLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERSTARRGGRGAFM 329

[Close]

BLAST of GR409312 vs. TrEMBL
Match: Q2A0N7_ORYSA (COP9 signalosome subunit 6 OS=Oryza sativa GN=csn6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.981e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHN-RRGGRTAFM 673
            RLPAM S KFQDDFLMEYNDTLL++YLAM TNCSS MN+LV+KF+  Y+R   RRGGR AFM
Sbjct:  268 RLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCSSTMNELVEKFNATYERSTARRGGRGAFM 329

[Close]

BLAST of GR409312 vs. TAIR peptide
Match: AT5G56280.1 (| Symbols: CSN6A | COP9 signalosome subunit 6A | chr5:22783617-22785530 REVERSE LENGTH=317)

HSP 1 Score: 102.834 bits (255), Expect = 1.725e-22
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -2

Query:  491 RLPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 673
            RLPAM S +FQD+FLMEYND LLI+YLAM+TNCSS MN++VDKF+TAYDR+ RRGGRTAFM
Sbjct:  257 RLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 317

[Close]

BLAST of GR409312 vs. TAIR peptide
Match: AT4G26430.1 (| Symbols: CSN6B | COP9 signalosome subunit 6B | chr4:13355229-13357326 FORWARD LENGTH=317)

HSP 1 Score: 96.6709 bits (239), Expect = 1.236e-20
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = -2

Query:  491 LPAMISGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNDLVDKFSTAYDRHNRRGGRTAFM 670
            LPA  S KF ++FLMEYND LL+SYLAM+TNC+S MN++VDKF+TAYD+H+RRGGRTAFM
Sbjct:  258 LPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSRRGGRTAFM 317

The following BLAST results are available for this feature:

BLAST of GR409312 vs. SwissProt
BLAST of GR409312 vs. TrEMBL
BLAST of GR409312 vs. TAIR peptide

BLAST of GR409312 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
CSN6A_ARATH	1.700e-21	78.69	COP9 signalosome complex subunit 6a OS=Arabidopsis...	[more]
CSN6B_ARATH	1.218e-19	73.33	COP9 signalosome complex subunit 6b OS=Arabidopsis...	[more]

BLAST of GR409312 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7UAV8_VITVI	1.850e-23	86.89	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9ST91_RICCO	3.489e-22	83.61	Signalosome subunit, putative OS=Ricinus communis ...	[more]
B9N5J2_POPTR	3.489e-22	83.61	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PFV1_POPTR	3.489e-22	83.61	Putative uncharacterized protein OS=Populus tricho...	[more]
Q1EC57_ARATH	2.500e-20	78.69	At5g56280 OS=Arabidopsis thaliana PE=2 SV=1	[more]
D7ML97_ARALY	4.264e-20	78.69	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D5ABV8_PICSI	7.274e-20	73.77	Putative uncharacterized protein OS=Picea sitchens...	[more]
A9RXW3_PHYPA	1.620e-19	75.41	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
Q6ZKM2_ORYSJ	1.981e-17	74.19	Putative COP9 complex subunit 6 OS=Oryza sativa su...	[more]
Q2A0N7_ORYSA	1.981e-17	74.19	COP9 signalosome subunit 6 OS=Oryza sativa GN=csn6...	[more]

BLAST of GR409312 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G56280.1	1.725e-22	78.69	\| Symbols: CSN6A \| COP9 signalosome subunit 6A \| c...	[more]
AT4G26430.1	1.236e-20	73.33	\| Symbols: CSN6B \| COP9 signalosome subunit 6B \| c...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10540	EIF3F-RELATED	coord: 1..44 score: 4.2
None	No IPR available	PANTHER	PTHR10540:SF8	SIGNALOSOME SUBUNIT 6	coord: 1..44 score: 4.2

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR409312 ID=GR409312; Name=GR409312; organism=Cicer arietinum; type=EST; length=674bp
GGAAAATTAATATTATTATTCAAATTATAGGTCAACCTATAGTTAAAAAT
ATTCATGGTTATTAATAAAAATCGTATATTATTATATTTTCATGAATGCT
TTTAGAAAAATAAATATCCAAAAGTTCTATGCTACCAAGAAATGCAAAAG
AATTTTGGACACAACATACATGAAAATGGAGGATGGTGGCTCAACAAAAG
ATGGCAATGAAAATCCACATCATGTCCTGAACTCTGTCTCCTCAACTTTC
AATTTTGTTAGAGAAATGCAAAAACCAACACATTTCCTTTTTCTTTTGTT
GGAGGAGGGGGCATGGTAATATGGTGACTTTTCACTAACTTCTTTTACTC
TCCCTATACTCTTCAAATCCAAAAGCTATACTAAGCTTCAATAACCAATG
CCTAAGCAGAAAAAAGAAGACAAAAATCTGTGCCTACAGAGTTGGAAAAG
TGCTTCTAGGAACTAGAAATGAGCAACAAGGCGATGTTCACATGAAAGCA
GTTCGTCCACCTCTTCTGTTATGCCTATCATACGCAGTACTGAATTTGTC
CACCAAATCATTCATTGCACTTGAGCAGTTGGTCAGCATGGCAAGGTAAC
TAATCAATAAGGTGTCATTGTATTCCATCAAGAAATCATCTTGAAATTTC
CCAGATATCATAGCAGGCAATCTT

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