GR916100

EST Overview


Name	GR916100
Unique Name	GR916100
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	418

Libraries


Library Name	Type
LIBEST_024969 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. WR-315) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR916100 vs. SwissProt
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.613e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -1

Query:  230 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRS 415
            +S+E+L+  F  FG++V VKIP GKGCGFVQ  +R++AE AI  L G  +G   +RLSWGR+
Sbjct:  314 VSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375

[Close]

BLAST of GR916100 vs. SwissProt
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.217e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = -1

Query:  230 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRS 415
            +++++LR  F  FG +V VKIPVGK CGFVQ  DR +AE AI  + G  I    VRLSWGRS
Sbjct:  324 VTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385

[Close]

BLAST of GR916100 vs. SwissProt
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.982e-11
Identity = 27/63 (42.86%), Postives = 45/63 (71.43%), Query Frame = -1

Query:  230 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRS 418
            ++S++DL+  F  FG ++++KIP GKGCGFVQ +++  AE AI  + G ++G   +RL+WG +
Sbjct:  307 NLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369

[Close]

BLAST of GR916100 vs. SwissProt
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.855e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = -1

Query:  233 LRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGR 400
            LR  F  FG +++V+IP GK CGFV+   R +AE +IQ L G ++G   +RLSWGR
Sbjct:  376 LRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431

[Close]

BLAST of GR916100 vs. TrEMBL
Match: B9RY32_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_0814100 PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.524e-28
Identity = 70/112 (62.50%), Postives = 75/112 (66.96%), Query Frame = -1

Query:  119 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK------------XXXXXXXXXXXGFAARQNQDIAMQPAAAIQGAS 418
            DISDEDLRQPF QFG+VVSVKIP GKGCGFVQ ADRK+AEDA+Q+LNGT IGKQTVRLSWGRSP NK                       G+A   NQD  M  AAA  GAS
Sbjct:  327 DISDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFADRKSAEDALQSLNGTTIGKQTVRLSWGRSPANKQWRGDHNNQWNGAYFGGQGYGGYGYAMAPNQDQNMYVAAAASGAS 438

[Close]

BLAST of GR916100 vs. TrEMBL
Match: B9N4W3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_744254 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.346e-26
Identity = 66/112 (58.93%), Postives = 74/112 (66.07%), Query Frame = -1

Query:  119 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK------------XXXXXXXXXXXGFAARQNQDIAMQPAAAIQGAS 418
            D++DEDLRQPF QFG+VVSVKIPVGKGC FVQ A+RKNAEDA+Q+LNGT IGKQTVRLSWGR+P NK                       G+A   NQD  M  AAA  G S
Sbjct:  286 DVTDEDLRQPFSQFGEVVSVKIPVGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQWHGGYFGGQGYAGYGYAMPPNQDPGMYVAAAASGVS 397

[Close]

BLAST of GR916100 vs. TrEMBL
Match: B9HRX8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_767539 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.226e-26
Identity = 65/112 (58.04%), Postives = 74/112 (66.07%), Query Frame = -1

Query:  119 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK------------XXXXXXXXXXXGFAARQNQDIAMQPAAAIQGAS 418
            D++DEDLRQPF QFG+VVSVK+P GKGC FVQ A+RKNAEDA+Q+LNGT IGKQTVRLSWGR+P NK                       G+A   NQD  M  AAA  GAS
Sbjct:  301 DVTDEDLRQPFSQFGEVVSVKMPTGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQWHGAYFGGQGYAGYGYAMPPNQDPGMYVAAAASGAS 412

[Close]

BLAST of GR916100 vs. TrEMBL
Match: A5BPW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008697 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.387e-25
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            ++SDEDLRQPF Q+G++VSVKIPVGKGCGFVQ A+R NAEDA+Q LNGT+IGKQTVRLSWGR+P NK
Sbjct:  186 NVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANK 252

[Close]

BLAST of GR916100 vs. TrEMBL
Match: Q9LJL7_ARATH (DNA/RNA binding protein-like OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.546e-25
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            D+ DEDLRQPF QFG+VVSVKIPVGKGCGFVQ ADRK+AEDAI++LNGT+IGK TVRLSWGRSP  +
Sbjct:  331 DVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQ 397

[Close]

BLAST of GR916100 vs. TrEMBL
Match: Q8LFI9_ARATH (Nuclear acid binding protein, putative OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.546e-25
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            D+ DEDLRQPF QFG+VVSVKIPVGKGCGFVQ ADRK+AEDAI++LNGT+IGK TVRLSWGRSP  +
Sbjct:  288 DVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQ 354

[Close]

BLAST of GR916100 vs. TrEMBL
Match: Q0WW84_ARATH (At3g19130 OS=Arabidopsis thaliana GN=At3g19130 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.546e-25
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            D+ DEDLRQPF QFG+VVSVKIPVGKGCGFVQ ADRK+AEDAI++LNGT+IGK TVRLSWGRSP  +
Sbjct:  331 DVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQ 397

[Close]

BLAST of GR916100 vs. TrEMBL
Match: D7L979_ARALY (RNA-binding protein 47B OS=Arabidopsis lyrata subsp. lyrata GN=ATRBP47B PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.287e-24
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            D++DEDLRQPF QFG+VVSVKIPVGKGCGFVQ A+RK+AEDAI+ LNGT+IGK TVRLSWGRSP  +
Sbjct:  331 DVTDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAERKSAEDAIETLNGTVIGKNTVRLSWGRSPNKQ 397

[Close]

BLAST of GR916100 vs. TrEMBL
Match: B9R7H3_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1591740 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.388e-24
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            +++DEDL+QPF Q+G++VSVKIPVGKGCGFVQ A R NAE+A+Q LNGT+IGKQTVRLSWGR+P NK
Sbjct:  322 NVTDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANK 388

[Close]

BLAST of GR916100 vs. TrEMBL
Match: B9MVK8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1110299 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.388e-24
Identity = 50/67 (74.63%), Postives = 62/67 (92.54%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            +++DEDL+QPF Q+G++VSVKIPVGKGCGFVQ A+R NAE+A+Q LNGT+IGKQTVRLSWGR+P NK
Sbjct:  306 NVTDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRDNAEEALQKLNGTVIGKQTVRLSWGRNPANK 372

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT3G19130.1 (| Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435)

HSP 1 Score: 116.701 bits (291), Expect = 4.554e-27
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            D+ DEDLRQPF QFG+VVSVKIPVGKGCGFVQ ADRK+AEDAI++LNGT+IGK TVRLSWGRSP  +
Sbjct:  331 DVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQ 397

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT1G47500.1 (| Symbols: ATRBP47C', RBP47C' | RNA-binding protein 47C' | chr1:17432682-17434805 FORWARD LENGTH=434)

HSP 1 Score: 110.538 bits (275), Expect = 3.263e-25
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = -1

Query:  218 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 415
            ++DEDL+QPF +FG++VSVKIPVGKGCGFVQ  +R NAE+A++ LNGT+IGKQTVRLSWGR+P NK
Sbjct:  317 VTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANK 382

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT1G47490.1 (| Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17427182 FORWARD LENGTH=432)

HSP 1 Score: 110.153 bits (274), Expect = 4.262e-25
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = -1

Query:  218 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 415
            ++DEDL+QPF +FG++VSVKIPVGKGCGFVQ  +R NAE+A++ LNGT+IGKQTVRLSWGR+P NK
Sbjct:  315 VTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANK 380

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT1G49600.1 (| Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A | chr1:18357236-18360150 REVERSE LENGTH=445)

HSP 1 Score: 107.071 bits (266), Expect = 3.608e-24
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = -1

Query:  119 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNKXXXXXXXXXXXGFA---------ARQNQDIAMQPAAAIQGAS 418
            D+++EDL QPF  FG+VVSVKIPVGKGCGFVQ A+R++AE+AI  LNGT+IGK TVRLSWGRSP  +           G++         A Q+ ++    AAA+ GAS
Sbjct:  337 DVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNNGYANQDSNMYATAAAAVPGAS 445

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT4G27000.1 (| Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415)

HSP 1 Score: 87.4261 bits (215), Expect = 2.958e-18
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = -1

Query:  218 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 415
            ++++DL+  F QFG++V VKIP GK CGFVQ A+R  AE A+  LNGT +G Q++RLSWGRSP NK
Sbjct:  289 VTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNK 354

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT1G11650.2 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405)

HSP 1 Score: 83.9593 bits (206), Expect = 3.271e-17
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = -1

Query:  218 ISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 415
            ++D+ L+  F Q+G++V VKIP GK CGFVQ +++  AE+A++ LNG  +G  TVRLSWGRSP NK
Sbjct:  272 VTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNK 337

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT5G54900.1 (| Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A | chr5:22295412-22298126 FORWARD LENGTH=387)

HSP 1 Score: 81.6481 bits (200), Expect = 1.623e-16
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = -1

Query:  218 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPGNK 418
            +++D++L+  F QFG+++ VKIP GK CGFVQ A++ +AE A+  LNGT +G Q++RLSWGRSP  +
Sbjct:  270 NVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQ 336

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT5G19350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421)

HSP 1 Score: 73.1738 bits (178), Expect = 5.774e-14
Identity = 30/65 (46.15%), Postives = 49/65 (75.38%), Query Frame = -1

Query:  224 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPG 418
            ++++E+L++ F Q G+V+ VKIP  KG G+VQ   R +AE+A+Q + G +IG+Q VR+SW ++PG
Sbjct:  243 NVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPG 307

[Close]

BLAST of GR916100 vs. TAIR peptide
Match: AT5G19350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425)

HSP 1 Score: 73.1738 bits (178), Expect = 5.774e-14
Identity = 30/65 (46.15%), Postives = 49/65 (75.38%), Query Frame = -1

Query:  224 DISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEDAIQALNGTMIGKQTVRLSWGRSPG 418
            ++++E+L++ F Q G+V+ VKIP  KG G+VQ   R +AE+A+Q + G +IG+Q VR+SW ++PG
Sbjct:  247 NVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPG 311

The following BLAST results are available for this feature:

BLAST of GR916100 vs. SwissProt
BLAST of GR916100 vs. TrEMBL
BLAST of GR916100 vs. TAIR peptide

BLAST of GR916100 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 4


Match Name	E-value	Identity	Description
YG41_SCHPO	3.613e-13	53.23	Uncharacterized RNA-binding protein C23E6.01c OS=S...	[more]
NAM8_YEAST	5.217e-12	54.84	Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P...	[more]
CSX1_SCHPO	1.982e-11	42.86	RNA-binding post-transcriptional regulator csx1 OS...	[more]
NGR1_YEAST	1.855e-9	50.00	Negative growth regulatory protein NGR1 OS=Sacchar...	[more]

BLAST of GR916100 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RY32_RICCO	9.524e-28	62.50	Nuclear acid binding protein, putative OS=Ricinus ...	[more]
B9N4W3_POPTR	2.346e-26	58.93	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9HRX8_POPTR	5.226e-26	58.04	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A5BPW5_VITVI	3.387e-25	79.10	Putative uncharacterized protein OS=Vitis vinifera...	[more]
Q9LJL7_ARATH	7.546e-25	80.60	DNA/RNA binding protein-like OS=Arabidopsis thalia...	[more]
Q8LFI9_ARATH	7.546e-25	80.60	Nuclear acid binding protein, putative OS=Arabidop...	[more]
Q0WW84_ARATH	7.546e-25	80.60	At3g19130 OS=Arabidopsis thaliana GN=At3g19130 PE=...	[more]
D7L979_ARALY	1.287e-24	79.10	RNA-binding protein 47B OS=Arabidopsis lyrata subs...	[more]
B9R7H3_RICCO	6.388e-24	74.63	Nuclear acid binding protein, putative OS=Ricinus ...	[more]
B9MVK8_POPTR	6.388e-24	74.63	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of GR916100 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 9


Match Name	E-value	Identity	Description
AT3G19130.1	4.554e-27	80.60	\| Symbols: ATRBP47B, RBP47B \| RNA-binding protein ...	[more]
AT1G47500.1	3.263e-25	72.73	\| Symbols: ATRBP47C', RBP47C' \| RNA-binding protei...	[more]
AT1G47490.1	4.262e-25	72.73	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein ...	[more]
AT1G49600.1	3.608e-24	52.29	\| Symbols: ATRBP47A, RBP47A \| RNA-binding protein ...	[more]
AT4G27000.1	2.958e-18	59.09	\| Symbols: ATRBP45C \| RNA-binding (RRM/RBD/RNP mot...	[more]
AT1G11650.2	3.271e-17	54.55	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD...	[more]
AT5G54900.1	1.623e-16	52.24	\| Symbols: ATRBP45A, RBP45A \| RNA-binding protein ...	[more]
AT5G19350.2	5.774e-14	46.15	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G19350.1	5.774e-14	46.15	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 16..38 score
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 1..94 score: 1.2
None	No IPR available	PANTHER	PTHR10432:SF67	NUCLEAR ACID BINDING PROTEIN	coord: 1..94 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 68..79 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..86 score: 2.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..57 score: 1.2
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 1..59 score: 1.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..63 score: 14
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 1..79 score: 3.8

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR916100 ID=GR916100; Name=GR916100; organism=Cicer arietinum; type=EST; length=418bp
GCGGCCGCCCGGGCAGGTACCATATAACCCAGCTACAAATTTAAAAATAA
TACTACAGTTCACTTAAGAGAGCAATAAAATCCATCCTATTTCAATACCA
GTTCTGCTATGACCGTTAGGAAGCACCTTGAATTGCAGCAGCAGGTTGCA
TAGCTATATCCTGATTCTGTCTAGCAGCAAATCCATGACCTCCATATCCA
TGGCCTCCATAACCATGCTTATTTCCTGGACTGCGACCCCAAGAAAGGCG
CACTGTCTGCTTCCCAATCATTGTTCCGTTCAATGCTTGAATTGCGTCCT
CAGCATTCTTTCTGTCAGCAAGTTGAACAAAACCACATCCTTTACCGACT
GGAATCTTCACAGAGACAACATCACCAAATTGCAAAAATGGTTGTCTGAG
ATCCTCATCACTGATGTC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Search form