HO062636
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of HO062636 vs. TrEMBL
Match: B3H5J7_ARATH (Uncharacterized protein At4g34588.1 OS=Arabidopsis thaliana GN=At4g34588 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.632e-11 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 152 ILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 ILSEIF SG M+NST+RRRTHLVQSFSV FLYWLYYVS Sbjct: 5 ILSEIFLSGFMLNSTIRRRTHLVQSFSVVFLYWLYYVS 42
BLAST of HO062636 vs. TrEMBL
Match: D7U9K8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_62.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031636001 PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.244e-10 Identity = 28/41 (68.29%), Postives = 37/41 (90.24%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 VI KGFT+IMPWL++N+K++P F KG+KI+V+KVELYEG T Sbjct: 485 VIVKGFTSIMPWLAVNEKNLPQFKKGEKIEVSKVELYEGET 525
BLAST of HO062636 vs. TrEMBL
Match: B9IAB5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1099630 PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.878e-8 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFT+IMPWL++++K++P F KG KI+V+KVEL+EG T Sbjct: 414 VTVKGFTSIMPWLAVSEKNLPQFAKGDKIEVSKVELFEGQT 454
BLAST of HO062636 vs. TrEMBL
Match: Q9SKZ9_ARATH (Putative DNA topoisomerase III beta OS=Arabidopsis thaliana GN=At2g32000 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 413 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 453
BLAST of HO062636 vs. TrEMBL
Match: Q680E4_ARATH (DNA topoisomerase OS=Arabidopsis thaliana GN=At2g32000 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 415 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 455
BLAST of HO062636 vs. TrEMBL
Match: Q56YZ6_ARATH (DNA topoisomerase OS=Arabidopsis thaliana GN=At2g32000 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482
BLAST of HO062636 vs. TrEMBL
Match: D7LEC3_ARALY (DNA topoisomerase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482130 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVIRVELYEGNT 482
BLAST of HO062636 vs. TrEMBL
Match: D7KSN6_ARALY (Expressed protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_895408 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 2 Query: 140 FMYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 FM P++SEI SG I+S++RRRTHLVQSFSV FLYW Y S Sbjct: 12 FMSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 53
BLAST of HO062636 vs. TrEMBL
Match: C5X4M3_SORBI (DNA topoisomerase OS=Sorghum bicolor GN=Sb02g029000 PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 2.436e-7 Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V +KGFT+IMPWL+I++ S+P+F KG + + KV++YEGST Sbjct: 438 VTSKGFTSIMPWLAISENSLPAFKKGDSVSIHKVDIYEGST 478
BLAST of HO062636 vs. TrEMBL
Match: B3H5Q6_ARATH (Uncharacterized protein At1g75388.1 OS=Arabidopsis thaliana GN=At1g75388 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 3.181e-7 Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2 Query: 143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 M P++SEI SG I+S++RRRTHLVQSFSV FLYW Y S Sbjct: 1 MSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 41
BLAST of HO062636 vs. TAIR peptide
Match: AT4G34588.1 (| Symbols: CPuORF2 | conserved peptide upstream open reading frame 2 | chr4:16522098-16522226 FORWARD LENGTH=42) HSP 1 Score: 71.2478 bits (173), Expect = 1.931e-13 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 152 ILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 ILSEIF SG M+NST+RRRTHLVQSFSV FLYWLYYVS Sbjct: 5 ILSEIFLSGFMLNSTIRRRTHLVQSFSVVFLYWLYYVS 42
BLAST of HO062636 vs. TAIR peptide
Match: AT2G32000.2 (| Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621397 REVERSE LENGTH=838) HSP 1 Score: 60.4622 bits (145), Expect = 3.409e-10 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 415 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 455
BLAST of HO062636 vs. TAIR peptide
Match: AT2G32000.1 (| Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621563 REVERSE LENGTH=865) HSP 1 Score: 60.4622 bits (145), Expect = 3.409e-10 Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123 V KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T Sbjct: 442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482
BLAST of HO062636 vs. TAIR peptide
Match: AT1G75388.1 (| Symbols: CPuORF5 | conserved peptide upstream open reading frame 5 | chr1:28291955-28292080 FORWARD LENGTH=41) HSP 1 Score: 58.151 bits (139), Expect = 1.692e-9 Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2 Query: 143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 M P++SEI SG I+S++RRRTHLVQSFSV FLYW Y S Sbjct: 1 MSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 41
BLAST of HO062636 vs. TAIR peptide
Match: AT2G18162.1 (| Symbols: CPuORF1 | conserved peptide upstream open reading frame 1 | chr2:7898917-7899042 REVERSE LENGTH=41) HSP 1 Score: 55.4546 bits (132), Expect = 1.097e-8 Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 2 Query: 143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265 M P+L EI SG + S + RRTHLVQSFSV FLYW Y VS Sbjct: 1 MTPVLCEILLSGLTVKSALCRRTHLVQSFSVVFLYWFYNVS 41 The following BLAST results are available for this feature:
BLAST of HO062636 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of HO062636 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >HO062636 ID=HO062636; Name=HO062636; organism=Cicer arietinum; type=EST; length=397bpback to top |