HO062636

EST Overview
NameHO062636
Unique NameHO062636
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length397
Libraries
Library NameType
LIBEST_026408 Chickpea drought stressed cDNA SSH library AB1cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
Homology
BLAST of HO062636 vs. TrEMBL
Match: B3H5J7_ARATH (Uncharacterized protein At4g34588.1 OS=Arabidopsis thaliana GN=At4g34588 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.632e-11
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  152 ILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            ILSEIF SG M+NST+RRRTHLVQSFSV FLYWLYYVS
Sbjct:    5 ILSEIFLSGFMLNSTIRRRTHLVQSFSVVFLYWLYYVS 42          
BLAST of HO062636 vs. TrEMBL
Match: D7U9K8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_62.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031636001 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.244e-10
Identity = 28/41 (68.29%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            VI KGFT+IMPWL++N+K++P F KG+KI+V+KVELYEG T
Sbjct:  485 VIVKGFTSIMPWLAVNEKNLPQFKKGEKIEVSKVELYEGET 525          
BLAST of HO062636 vs. TrEMBL
Match: B9IAB5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1099630 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.878e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFT+IMPWL++++K++P F KG KI+V+KVEL+EG T
Sbjct:  414 VTVKGFTSIMPWLAVSEKNLPQFAKGDKIEVSKVELFEGQT 454          
BLAST of HO062636 vs. TrEMBL
Match: Q9SKZ9_ARATH (Putative DNA topoisomerase III beta OS=Arabidopsis thaliana GN=At2g32000 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  413 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 453          
BLAST of HO062636 vs. TrEMBL
Match: Q680E4_ARATH (DNA topoisomerase OS=Arabidopsis thaliana GN=At2g32000 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  415 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 455          
BLAST of HO062636 vs. TrEMBL
Match: Q56YZ6_ARATH (DNA topoisomerase OS=Arabidopsis thaliana GN=At2g32000 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482          
BLAST of HO062636 vs. TrEMBL
Match: D7LEC3_ARALY (DNA topoisomerase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482130 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVIRVELYEGNT 482          
BLAST of HO062636 vs. TrEMBL
Match: D7KSN6_ARALY (Expressed protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_895408 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.410e-8
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 2
Query:  140 FMYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            FM P++SEI  SG  I+S++RRRTHLVQSFSV FLYW Y  S
Sbjct:   12 FMSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 53          
BLAST of HO062636 vs. TrEMBL
Match: C5X4M3_SORBI (DNA topoisomerase OS=Sorghum bicolor GN=Sb02g029000 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.436e-7
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V +KGFT+IMPWL+I++ S+P+F KG  + + KV++YEGST
Sbjct:  438 VTSKGFTSIMPWLAISENSLPAFKKGDSVSIHKVDIYEGST 478          
BLAST of HO062636 vs. TrEMBL
Match: B3H5Q6_ARATH (Uncharacterized protein At1g75388.1 OS=Arabidopsis thaliana GN=At1g75388 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.181e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2
Query:  143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            M P++SEI  SG  I+S++RRRTHLVQSFSV FLYW Y  S
Sbjct:    1 MSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 41          
BLAST of HO062636 vs. TAIR peptide
Match: AT4G34588.1 (| Symbols: CPuORF2 | conserved peptide upstream open reading frame 2 | chr4:16522098-16522226 FORWARD LENGTH=42)

HSP 1 Score: 71.2478 bits (173), Expect = 1.931e-13
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2
Query:  152 ILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            ILSEIF SG M+NST+RRRTHLVQSFSV FLYWLYYVS
Sbjct:    5 ILSEIFLSGFMLNSTIRRRTHLVQSFSVVFLYWLYYVS 42          
BLAST of HO062636 vs. TAIR peptide
Match: AT2G32000.2 (| Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621397 REVERSE LENGTH=838)

HSP 1 Score: 60.4622 bits (145), Expect = 3.409e-10
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  415 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 455          
BLAST of HO062636 vs. TAIR peptide
Match: AT2G32000.1 (| Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621563 REVERSE LENGTH=865)

HSP 1 Score: 60.4622 bits (145), Expect = 3.409e-10
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGST 123
            V  KGFTAIMPW ++++K +PSF KG++I+V +VELYEG+T
Sbjct:  442 VTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNT 482          
BLAST of HO062636 vs. TAIR peptide
Match: AT1G75388.1 (| Symbols: CPuORF5 | conserved peptide upstream open reading frame 5 | chr1:28291955-28292080 FORWARD LENGTH=41)

HSP 1 Score: 58.151 bits (139), Expect = 1.692e-9
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 2
Query:  143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            M P++SEI  SG  I+S++RRRTHLVQSFSV FLYW Y  S
Sbjct:    1 MSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWFYVFS 41          
BLAST of HO062636 vs. TAIR peptide
Match: AT2G18162.1 (| Symbols: CPuORF1 | conserved peptide upstream open reading frame 1 | chr2:7898917-7899042 REVERSE LENGTH=41)

HSP 1 Score: 55.4546 bits (132), Expect = 1.097e-8
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  143 MYPILSEIFFSGSMINSTVRRRTHLVQSFSVAFLYWLYYVS 265
            M P+L EI  SG  + S + RRTHLVQSFSV FLYW Y VS
Sbjct:    1 MTPVLCEILLSGLTVKSALCRRTHLVQSFSVVFLYWFYNVS 41          
The following BLAST results are available for this feature:
BLAST of HO062636 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B3H5J7_ARATH3.632e-1186.84Uncharacterized protein At4g34588.1 OS=Arabidopsis... [more]
D7U9K8_VITVI5.244e-1068.29Whole genome shotgun sequence of line PN40024, sca... [more]
B9IAB5_POPTR2.878e-860.98Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9SKZ9_ARATH6.410e-860.98Putative DNA topoisomerase III beta OS=Arabidopsis... [more]
Q680E4_ARATH6.410e-860.98DNA topoisomerase OS=Arabidopsis thaliana GN=At2g3... [more]
Q56YZ6_ARATH6.410e-860.98DNA topoisomerase OS=Arabidopsis thaliana GN=At2g3... [more]
D7LEC3_ARALY6.410e-860.98DNA topoisomerase family protein OS=Arabidopsis ly... [more]
D7KSN6_ARALY6.410e-866.67Expressed protein OS=Arabidopsis lyrata subsp. lyr... [more]
C5X4M3_SORBI2.436e-756.10DNA topoisomerase OS=Sorghum bicolor GN=Sb02g02900... [more]
B3H5Q6_ARATH3.181e-765.85Uncharacterized protein At1g75388.1 OS=Arabidopsis... [more]
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BLAST of HO062636 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G34588.11.931e-1386.84| Symbols: CPuORF2 | conserved peptide upstream op... [more]
AT2G32000.23.409e-1060.98| Symbols: | DNA topoisomerase, type IA, core | c... [more]
AT2G32000.13.409e-1060.98| Symbols: | DNA topoisomerase, type IA, core | c... [more]
AT1G75388.11.692e-965.85| Symbols: CPuORF5 | conserved peptide upstream op... [more]
AT2G18162.11.097e-863.41| Symbols: CPuORF1 | conserved peptide upstream op... [more]
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Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO062636 ID=HO062636; Name=HO062636; organism=Cicer arietinum; type=EST; length=397bp
GTTATCACCAAAGGATTTACAGCTATTATGCCTTGGTTGTCAATAAATGA
TAAAAGTATTCCGTCATTTACAAAAGGGCAGAAAATAAAAGTAACAAAGG
TGGAGCTCTATGAGGGGAGTACGCGGGGAATGTTTGATATTCATGTATCC
AATTCTCAGTGAAATCTTCTTTTCTGGGAGTATGATCAATTCCACTGTTA
GGCGCAGGACCCATTTAGTTCAATCTTTCTCTGTTGCTTTTCTCTACTGG
CTTTACTACGTTTCATGATTATTAATCCCTTTTACTTTAATCCTATATCA
TCTATATTTATATCTTAATATCTATATATATATTTGCAGTATTTTTGTGA
GTTTGTTTGTTTAATTCAATTCTAGTACCTGCCCGGGCGGCCGCTCG
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