HO066508

EST Overview


Name	HO066508
Unique Name	HO066508
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	590

Libraries


Library Name	Type
LIBEST_026413 Chickpea drought stressed cDNA SSH library AS2	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLTR (Polyribonucleotide nucleotidyltransferase OS=Chlamydia trachomatis GN=pnp PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.961e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPD 395
            G+EGLCHISELS   +    D  K GD++ VKL+ IN+KGQL+LSH+A L D
Sbjct:  644 GKEGLCHISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLTB (Polyribonucleotide nucleotidyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=pnp PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.961e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPD 395
            G+EGLCHISELS   +    D  K GD++ VKL+ IN+KGQL+LSH+A L D
Sbjct:  644 GKEGLCHISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLTA (Polyribonucleotide nucleotidyltransferase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=pnp PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.961e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPD 395
            G+EGLCHISELS   +    D  K GD++ VKL+ IN+KGQL+LSH+A L D
Sbjct:  644 GKEGLCHISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLT2 (Polyribonucleotide nucleotidyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=pnp PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.961e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPD 395
            G+EGLCHISELS   +    D  K GD++ VKL+ IN+KGQL+LSH+A L D
Sbjct:  644 GKEGLCHISELSKQKVDNISDFVKEGDKLAVKLLSINEKGQLKLSHKATLED 695

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLPN (Polyribonucleotide nucleotidyltransferase OS=Chlamydia pneumoniae GN=pnp PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.961e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALL 389
            G+EGLCHISE S   +    DV K GD IDVKL+ IN+KGQL+LSH+A L
Sbjct:  644 GKEGLCHISECSRQRIENISDVVKEGDIIDVKLLSINEKGQLKLSHKATL 693

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_CHLMU (Polyribonucleotide nucleotidyltransferase OS=Chlamydia muridarum GN=pnp PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.756e-10
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALL 389
            G+EGLCHISELS   +    D  K GDR+ VKL+ IN+KGQL+LSH+A L
Sbjct:  643 GKEGLCHISELSKQKVDNVADFVKEGDRLAVKLLSINEKGQLKLSHKATL 692

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_DEHSC (Polyribonucleotide nucleotidyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=pnp PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.353e-9
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 3

Query:  177 SGLISACSNFKALVGLNRGTRGREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALL-PDADPDNSNSNATAALP 440
            +G ++    F A V +     G+EG+ HISEL+   + K ED+ K GD I VK+IEI+++G++ LSHR +L P+A P + N ++    P
Sbjct:  624 TGKVTRIMTFGAFVEI---LPGKEGMVHISELADHRVEKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPISRNRDSQPRRP 709

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_DEHSB (Polyribonucleotide nucleotidyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=pnp PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.353e-9
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 3

Query:  177 SGLISACSNFKALVGLNRGTRGREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALL-PDADPDNSNSNATAALP 440
            +G ++    F A V +     G+EG+ HISEL+   + K ED+ K GD I VK+IEI+++G++ LSHR +L P+A P + N ++    P
Sbjct:  624 TGKVTRIMTFGAFVEI---LPGKEGMVHISELADHRVEKVEDIVKVGDDITVKVIEIDNQGRVNLSHRVILNPNAVPISRNRDSQPRRP 709

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_DESOH (Polyribonucleotide nucleotidyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=pnp PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.720e-9
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 3

Query:  180 GLISACSNFKALVGLNRGTRGREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSD 467
            G +   ++F A + +  GT   +GLCHISEL    +    DV K GD++ VK++E++ +G++RLS +ALLP   P+    +  +A       G SD
Sbjct:  626 GEVVRITDFGAFIQIKNGT---DGLCHISELEHHHVKSVTDVVKMGDKVRVKVLEVSPEGKIRLSRKALLP--APEKGEEDEKSAPRSRRPGGNSD 716

[Close]

BLAST of HO066508 vs. SwissProt
Match: PNP_DESHD (Polyribonucleotide nucleotidyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pnp PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.274e-8
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 3

Query:  168 RSNSGLISACSNFKALVGLNRGT---RGREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNA 425
            R  +G ++   +F A V +  G     G+EGL HIS+L+ G + K EDV K GD I VK   I+ +G+L LS +  LP+ +P+ + S A
Sbjct:  628 RIYNGRVTRIMDFGAFVEVIPGVLGLSGKEGLVHISQLAHGRVEKVEDVVKLGDEILVKATGIDKQGRLNLSRKEALPNPNPNPNGSTA 716

[Close]

BLAST of HO066508 vs. TrEMBL
Match: O24288_PEA (Polynucleotide phosphorylase OS=Pisum sativum GN=pnp PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.700e-32
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPK 545
            GREGLC+ISELSSGWL KAEDVFK GD IDVKL EIN+KGQLRLSHRALLPDAD DNSNS   ++L         +E +S TNAGL E KTEQ ND  NTPK
Sbjct:  782 GREGLCYISELSSGWLAKAEDVFKVGDHIDVKLTEINEKGQLRLSHRALLPDADSDNSNSTDKSSL---------EEVSSPTNAGLFEEKTEQPNDEVNTPK 874

HSP 2 Score: 24.2534 bits (51), Expect = 7.700e-32
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  541 PKAQSRLKGIRRTILY 588
            PKAQ  LK ++RTIL+
Sbjct:  873 PKAQPHLKEVQRTILH 888

[Close]

BLAST of HO066508 vs. TrEMBL
Match: C5XAC1_SORBI (Putative uncharacterized protein Sb02g003900 OS=Sorghum bicolor GN=Sb02g003900 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.358e-22
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPKGTVSSKRNS 572
            GREGLCHISELSSGWL KAED FK GDRIDVKLIEINDKGQLRLS RALLPDAD ++++ +     P        D+A  +T+      + ++ ++ F     T+ +   S
Sbjct:  762 GREGLCHISELSSGWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDADSESNSGSTKEKAPQ------KDDAIKMTSR---RPRRKRQSEPFGAENATIKTLEKS 863

[Close]

BLAST of HO066508 vs. TrEMBL
Match: B9SI65_RICCO (Polyribonucleotide nucleotidyltransferase, putative OS=Ricinus communis GN=RCOM_1321070 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.812e-20
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPKGTVSSKRNS-EDDSVP 590
            GREGLCHISEL+S WL KAED FK GDR+DVKLIE+N+KGQL+LS +ALLP+   +N +   T       +        + +  G+ E K EQ   + ++P+   S K N+ E+  VP
Sbjct:  788 GREGLCHISELTSSWLAKAEDAFKVGDRVDVKLIEVNEKGQLKLSRKALLPEPTVENPDGKTT-------DKDYPKGTVNSSKVGITEAKIEQLKGDTSSPEVATSPKSNAVENTPVP 898

[Close]

BLAST of HO066508 vs. TrEMBL
Match: Q69LE7_ORYSJ (Os07g0168000 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0050F10.4 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.273e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSN 416
            GREGLCHISELSS WL KAED FK GDRIDVKLIEINDKGQLRLS RALLPDA+ ++S+
Sbjct:  786 GREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSS 844

[Close]

BLAST of HO066508 vs. TrEMBL
Match: D7TL53_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029958001 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.273e-20
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPD------NSNSNATAALPDSANNGLSDEATSLTNAG----------LVEGKTEQTNDNFNTPKGTVS 557
            GREGLCHISELS  WL K ED FK GDR+DVKLIEINDKGQLRLS +ALLP+A+P+       ++S   AA   + + G + +A ++   G          LV    ++ + N   PK ++S
Sbjct:  775 GREGLCHISELSPSWLAKTEDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKPSLKQRTSSKENAASQKAPDKGTTKKAVNMPKDGLGEVNKIIKRLVSSGRDEPDTNKERPKKSIS 896

[Close]

BLAST of HO066508 vs. TrEMBL
Match: A3BGY2_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_23227 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.273e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSN 416
            GREGLCHISELSS WL KAED FK GDRIDVKLIEINDKGQLRLS RALLPDA+ ++S+
Sbjct:  662 GREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSS 720

[Close]

BLAST of HO066508 vs. TrEMBL
Match: A2YIJ3_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25038 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.273e-20
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSN 416
            GREGLCHISELSS WL KAED FK GDRIDVKLIEINDKGQLRLS RALLPDA+ ++S+
Sbjct:  749 GREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSS 807

[Close]

BLAST of HO066508 vs. TrEMBL
Match: B9I641_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241943 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.995e-20
Identity = 55/115 (47.83%), Postives = 67/115 (58.26%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPKGTVSSKRNSEDDS 584
            G EGLCHISELSS WLPKAED FK GDR+DVKLIE+N KGQLRLS +ALLP+   + S++   A                     L EG TEQ+ D     K    +K +S +D+
Sbjct:  714 GHEGLCHISELSSNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEVTSEKSSAEQQA-------------------RDLTEGNTEQSKDKSRDTKFVNPTKVDSVEDA 809

[Close]

BLAST of HO066508 vs. TrEMBL
Match: B9IPU7_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_780322 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.894e-18
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 3

Query:  249 GLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNGLSDEATSLTNAGLVEGKTEQTNDNFNTPKGTVSSKRNSEDDSVP 590
            GLCHISEL+S WLPKAEDVFK GDR+DVKLI++N+KGQLRLS +ALLP+A P+ S          SA +  +D+A+      +V+   +   + +      V+S R+      P
Sbjct:    1 GLCHISELTSNWLPKAEDVFKVGDRVDVKLIKVNEKGQLRLSRKALLPEATPEKS----------SAEHHATDKASP---RRIVQAPKDGLGEEYKDKDSAVNSPRSDSIKDAP 101

[Close]

BLAST of HO066508 vs. TrEMBL
Match: D7L188_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_896385 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.199e-17
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAALPDSANNG 458
            GREGLCHISELS+ WL K ED +K GDRIDVKLIE+N+KGQLRLS RALLP+++ D  +     A   + + G
Sbjct:  785 GREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPAGDSTKDKG 857

[Close]

BLAST of HO066508 vs. TAIR peptide
Match: AT3G03710.1 (| Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922)

HSP 1 Score: 91.2781 bits (225), Expect = 4.157e-19
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 3

Query:  240 GREGLCHISELSSGWLPKAEDVFKXGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSNATAA 434
            GREGLCHISELS+ WL K ED +K GDRIDVKLIE+N+KGQLRLS RALLP+++ D  +     A
Sbjct:  785 GREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPA 849

The following BLAST results are available for this feature:

BLAST of HO066508 vs. SwissProt
BLAST of HO066508 vs. TrEMBL
BLAST of HO066508 vs. TAIR peptide

BLAST of HO066508 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
PNP_CHLTR	3.961e-10	57.69	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_CHLTB	3.961e-10	57.69	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_CHLTA	3.961e-10	57.69	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_CHLT2	3.961e-10	57.69	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_CHLPN	3.961e-10	62.00	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_CHLMU	6.756e-10	60.00	Polyribonucleotide nucleotidyltransferase OS=Chlam...	[more]
PNP_DEHSC	3.353e-9	39.33	Polyribonucleotide nucleotidyltransferase OS=Dehal...	[more]
PNP_DEHSB	3.353e-9	39.33	Polyribonucleotide nucleotidyltransferase OS=Dehal...	[more]
PNP_DESOH	5.720e-9	35.42	Polyribonucleotide nucleotidyltransferase OS=Desul...	[more]
PNP_DESHD	1.274e-8	39.33	Polyribonucleotide nucleotidyltransferase OS=Desul...	[more]

BLAST of HO066508 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
O24288_PEA	7.700e-32	70.59	Polynucleotide phosphorylase OS=Pisum sativum GN=p...	[more]
C5XAC1_SORBI	7.358e-22	51.35	Putative uncharacterized protein Sb02g003900 OS=So...	[more]
B9SI65_RICCO	1.812e-20	45.76	Polyribonucleotide nucleotidyltransferase, putativ...	[more]
Q69LE7_ORYSJ	5.273e-20	83.05	Os07g0168000 protein OS=Oryza sativa subsp. japoni...	[more]
D7TL53_VITVI	5.273e-20	45.90	Whole genome shotgun sequence of line PN40024, sca...	[more]
A3BGY2_ORYSJ	5.273e-20	83.05	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2YIJ3_ORYSI	5.273e-20	83.05	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B9I641_POPTR	8.995e-20	47.83	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9IPU7_POPTR	2.894e-18	44.74	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7L188_ARALY	3.199e-17	60.27	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of HO066508 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G03710.1	4.157e-19	66.15	\| Symbols: RIF10, PNP \| polyribonucleotide nucleot...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	Ribosomal protein S1, RNA-binding domain	PFAM	PF00575	S1	coord: 16..82 score: 7.3
IPR003029	Ribosomal protein S1, RNA-binding domain	PROFILE	PS50126	S1	coord: 11..82 score: 12
IPR012162	Polyribonucleotide nucleotidyltransferase	PANTHER	PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	coord: 36..87 score: 1.6
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140	no description	coord: 16..86 score: 2.7
IPR016027	Nucleic acid-binding, OB-fold-like	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 8..87 score: 2.1
IPR022967	RNA-binding domain, S1	SMART	SM00316	no description	coord: 9..82 score: 6.6
None	No IPR available	SEG	seg	seg	coord: 41..52 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO066508 ID=HO066508; Name=HO066508; organism=Cicer arietinum; type=EST; length=590bp
GCAAGCATCAAAGCTAAATATCATTAAAAAGAACAACTTAAAAAATCCAG
GGCAGCACTTATCGGCCCCATCAATTGGAGGTCAAAATTATTGCCATCAA
GTCTTTTAAAACAAGACTAGTATTCTAACTATAATTTATTAACCAAAACC
CCGCAGCCAAATCTCATCGCTCAAACTCAGGTTTGATATCCGCTTGTTCC
AATTTCAAAGCTTTAGTAGGGCTCAACAGGGGTACGCGGGGACGGGAGGG
ACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGCTACCTAAGGCAGAAG
ATGTTTTCAAGGNGGGAGATCGGATTGATGTTAAACTTATTGAGATAAAT
GATAAGGGACAGCTGCGTCTTAGTCACCGAGCACTGCTTCCTGATGCAGA
TCCAGACAATTCAAATTCAAATGCTACAGCAGCTTTGCCAGACTCAGCTA
ATAATGGTTTGTCGGATGAAGCTACAAGCCTGACAAATGCTGGTTTAGTT
GAAGGGAAAACTGAACAGACTAATGATAATTTTAACACTCCCAAAGGCAC
AGTCTCGTCTAAAAGGAATTCGGAGGACGATTCTGTACCT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0004654	polyribonucleotide nucleotidyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **Biological Process**
Term	Definition
GO:0006402	mRNA catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR003029	S1_domain
IPR012162	PNPase
IPR012340	NA-bd_OB-fold
IPR016027	Nucleic acid-binding, OB-fold-like
IPR022967	S1_dom

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