GR395779

EST Overview


Name	GR395779
Unique Name	GR395779
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	696

Libraries


Library Name	Type
LIBEST_024781 ICC4958 dehydration stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR395779 vs. TrEMBL
Match: C6SYN8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.430e-13
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 2

Query:  104 CRWTKSSWAFLNEPPMIEAAPNKYAAQFHVANLGSSKLNPGDEI 235
            C WTKSSWAFLNEPP+IEAA NKYA+QF VANLGS+K NPGD I
Sbjct:   94 CWWTKSSWAFLNEPPVIEAASNKYASQFQVANLGSTKFNPGDGI 137

[Close]

BLAST of GR395779 vs. TrEMBL
Match: C6T390_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.439e-13
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 2

Query:  110 WTKSSWAFLNEPPMIEAAPNKYAAQFHVANLGSSKLNPGDEI 235
            WTKSSWAFLNEPP+IEAA NKYA+QFHVANLGS+KLNP D I
Sbjct:  101 WTKSSWAFLNEPPVIEAASNKYASQFHVANLGSTKLNPEDGI 142

[Close]

BLAST of GR395779 vs. TrEMBL
Match: C6T3M6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.531e-7
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 2

Query:  110 WTKSSWAFLNEPPMIEAAPNKYAAQFHVANLGSS 211
            WTKSSWAFLNEPP+ EA  NKY +QFHV ++GSS
Sbjct:  101 WTKSSWAFLNEPPVTEAVSNKYKSQFHVTSMGSS 134

The following BLAST results are available for this feature:

BLAST of GR395779 vs. TrEMBL

BLAST of GR395779 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
C6SYN8_SOYBN	1.430e-13	81.82	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T390_SOYBN	2.439e-13	85.71	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T3M6_SOYBN	1.531e-7	73.53	Putative uncharacterized protein OS=Glycine max PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 8..22 score: NAcoord: 26..48 score: NAcoord: 53..75 score
None	No IPR available	SEG	seg	seg	coord: 46..66 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR395779 ID=GR395779; Name=GR395779; organism=Cicer arietinum; type=EST; length=696bp
TTGTATTGTTATTTTTTTCAGAGAAAGTAGTCCCATATGTTATGGATCAT
ATATATTAATTTAATTATTAAATTTGGTATATGGTTGGTCTAATTTGAGT
GCATGCAGGTGGACAAAGAGTAGCTGGGCATTTTTGAATGAGCCTCCAAT
GATTGAAGCTGCACCCAACAAGTATGCAGCACAGTTTCACGTTGCCAACT
TGGGATCATCAAAATTGAACCCCGGAGATGAAATTATTATTGCTTGATGG
GAGCATAAACCTAATTAAACACTAAACCCTGTAACTGTATATAGTGTTAA
TGTTTTTGTTATTCGATCAGTATTTATGTTAACATCGATATAATTCTACA
TGTTCAGTGTTGAACCAATAGCTGTGTTCATTTTTGGAGTCCTGTGTTGC
TATGTAACTGTAAGAAGCTTATTATATGTATGCAAATCATCCCGTGTTCC
TGGCTTGTTTCCACAGTTTAATTTAAATACCGCCACTACATGCTTCTTTA
CACCACCCCCCCCCCCCCTTTTTGCCTTTTTCTTTGCCGCTTCATCTCAC
CGCCTAACTCTCCTCTCAGATTTTTGCCCTCTCCTCGTCCGTCCAACCCT
ATTCGCATACCTTCCCACTTTCTTTCCACTGTCTACCCTCCACTCCTTCT
TTTTTACACGCCCACCCCACCTCCTATCTTTACTCTACTTACCCCT

Search form