GR398592

EST Overview


Name	GR398592
Unique Name	GR398592
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	702

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.084e-29
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.084e-29
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.084e-29
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.084e-29
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.084e-29
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_DANRE (Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.188e-28
Identity = 59/83 (71.08%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLDDAEEV++K K+RK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_DROME (Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster GN=CG18591 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.552e-28
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ+++R+Q+WL+E   LRIEG I+GFDEYMNLVLDDAEEV VK + R+ LGRI+LKGDNITL+ N +
Sbjct:    8 KVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLIQNVS 90

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUEL1_HUMAN (Putative small nuclear ribonucleoprotein polypeptide E-like protein 1 OS=Homo sapiens GN=SNRPEL1 PE=5 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.458e-28
Identity = 58/83 (69.88%), Postives = 75/83 (90.36%), Query Frame = 3

Query:  123 KVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTA 371
            KVQ+VM QPINLIFR+LQ++++IQ+WL+EQ +++IEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ + +
Sbjct:    9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_CAEBR (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis briggsae GN=snr-6 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.209e-26
Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            M+  K+Q+VM QP+NLIFR+LQ++ R+QIWL+E    R+EG IIGFDE+MN+V D+AEEVN+K K R  +GRILLKGDNITL+   A+
Sbjct:    1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHAAAQ 88

[Close]

BLAST of GR398592 vs. SwissProt
Match: RUXE_CAEEL (Probable small nuclear ribonucleoprotein E OS=Caenorhabditis elegans GN=snr-6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.673e-25
Identity = 52/83 (62.65%), Postives = 69/83 (83.13%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLM 359
            M++ K+ +VM QP+NLIFR+LQ++ R+QIWL+E    R+EG IIGFDE+MN+V D+AEEVN+K K R  +GRILLKGDNITL+
Sbjct:    1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLI 83

[Close]

BLAST of GR398592 vs. TrEMBL
Match: C6SYH7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.082e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSRKTLGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: C6T160_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.801e-40
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQRVMTQPINLIFRFLQ KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRVMTQPINLIFRFLQGKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: B9S9Y9_RICCO (Small nuclear ribonucleoprotein E, putative OS=Ricinus communis GN=RCOM_0523630 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.352e-40
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQ WLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: C6SYU8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.071e-40
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV++KKKSRKTLGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVSIKKKSRKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: B7FGU1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.011e-40
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNL LDDAEEVNVKKKS+KTLGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: A9PB49_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_737849 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.936e-40
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEEVN+KKKSRK+LGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRKSLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: D6BQM6_9ROSI (Small nuclear ribonucleoprotein polypeptide OS=Jatropha curcas PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.524e-39
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKK+RK+LGRILLKGDNITLMMN+ K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKSLGRILLKGDNITLMMNSGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: B9T0H9_RICCO (Small nuclear ribonucleoprotein E, putative OS=Ricinus communis GN=RCOM_0729670 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.991e-39
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT 368
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKK+RKTLGRILLKGDNITLMMN+
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKTLGRILLKGDNITLMMNS 86

[Close]

BLAST of GR398592 vs. TrEMBL
Match: C5XL26_SORBI (Putative uncharacterized protein Sb03g001950 OS=Sorghum bicolor GN=Sb03g001950 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.600e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+NVKK +RK+LGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKNTRKSLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TrEMBL
Match: D7SJ02_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008301001 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.396e-39
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MA+TKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK ++KTLGRILLKGDNITLMMNT K
Sbjct:    1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNTKKTLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TAIR peptide
Match: AT4G30330.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88)

HSP 1 Score: 159.844 bits (403), Expect = 1.273e-39
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK+RK LGRILLKGDNITLMMN  K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]

BLAST of GR398592 vs. TAIR peptide
Match: AT2G18740.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124710 FORWARD LENGTH=88)

HSP 1 Score: 159.844 bits (403), Expect = 1.273e-39
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTAK 374
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LGRILLKGDNITLMMNT K
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of GR398592 vs. TAIR peptide
Match: AT2G18740.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124581 FORWARD LENGTH=78)

HSP 1 Score: 129.413 bits (324), Expect = 1.843e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 3

Query:  111 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLG 323
            MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LG
Sbjct:    1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLG 71

The following BLAST results are available for this feature:

BLAST of GR398592 vs. SwissProt
BLAST of GR398592 vs. TrEMBL
BLAST of GR398592 vs. TAIR peptide

BLAST of GR398592 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RUXE_PIG	4.084e-29	72.29	Small nuclear ribonucleoprotein E OS=Sus scrofa GN...	[more]
RUXE_MOUSE	4.084e-29	72.29	Small nuclear ribonucleoprotein E OS=Mus musculus ...	[more]
RUXE_HUMAN	4.084e-29	72.29	Small nuclear ribonucleoprotein E OS=Homo sapiens ...	[more]
RUXE_CHICK	4.084e-29	72.29	Small nuclear ribonucleoprotein E OS=Gallus gallus...	[more]
RUXE_BOVIN	4.084e-29	72.29	Small nuclear ribonucleoprotein E OS=Bos taurus GN...	[more]
RUXE_DANRE	1.188e-28	71.08	Small nuclear ribonucleoprotein E OS=Danio rerio G...	[more]
RUXE_DROME	1.552e-28	69.88	Probable small nuclear ribonucleoprotein E OS=Dros...	[more]
RUEL1_HUMAN	3.458e-28	69.88	Putative small nuclear ribonucleoprotein polypepti...	[more]
RUXE_CAEBR	7.209e-26	61.36	Probable small nuclear ribonucleoprotein E OS=Caen...	[more]
RUXE_CAEEL	4.673e-25	62.65	Probable small nuclear ribonucleoprotein E OS=Caen...	[more]

BLAST of GR398592 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SYH7_SOYBN	8.082e-41	97.73	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T160_SOYBN	1.801e-40	97.73	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9S9Y9_RICCO	2.352e-40	96.59	Small nuclear ribonucleoprotein E, putative OS=Ric...	[more]
C6SYU8_SOYBN	3.071e-40	96.59	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FGU1_MEDTR	4.011e-40	96.59	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PB49_POPTR	8.936e-40	94.32	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D6BQM6_9ROSI	1.524e-39	94.32	Small nuclear ribonucleoprotein polypeptide OS=Jat...	[more]
B9T0H9_RICCO	1.991e-39	96.51	Small nuclear ribonucleoprotein E, putative OS=Ric...	[more]
C5XL26_SORBI	2.600e-39	93.18	Putative uncharacterized protein Sb03g001950 OS=So...	[more]
D7SJ02_VITVI	3.396e-39	93.18	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of GR398592 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G30330.1	1.273e-39	89.77	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G18740.1	1.273e-39	89.77	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT2G18740.2	1.843e-30	88.73	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 24..87 score: 8.9
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	SMART	SM00651	no description	coord: 23..89 score: 1.7
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 15..92 score: 2.5
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 13..88 score: 6.7
None	No IPR available	PANTHER	PTHR11193	SNRNP SM FAMILY MEMBER	coord: 6..92 score: 8.9
None	No IPR available	SEG	seg	seg	coord: 43..60 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR398592 ID=GR398592; Name=GR398592; organism=Cicer arietinum; type=EST; length=702bp
GGCTGCTCCCGTTGGTGTCTAAAACCTCCTCTCATCTCAGTGAGTGAGTA
CTGAGTAGCAAAAACCCTCTCATCTCTGCAAATTGCGAACGTCGATAAAC
TTCAGCTTCAATGGCTAGCACCAAAGTTCAGAGGGTTATGACCCAACCCA
TCAACTTGATCTTCAGGTTTCTTCAAAGCAAAGCGCGTATTCAGATTTGG
CTCTTTGAGCAAAAGGATTTGAGGATTGAAGGAAGAATCATTGGTTTTGA
CGAGTACATGAATTTGGTTTTGGATGATGCTGAAGAAGTAAACGTCAAGA
AGAAGAGCAGAAAGACATTAGGGAGGATCCTTCTTAAAGGAGACAACATA
ACTTTAATGATGAACACGGCAAAATGATGAGCACATTGGTCCGGTCGTTG
CATCCAACAAGAAGGCTTATTTATCTTTACCTTTTCAGTTTAATTACAAT
ATCTCTTGTCAACATGTTGAATATGCTGTGTGAGAAAATATTATGTTGAC
AATGTGAATTTTTTATGCACCAAGACAAATACTTGATTGATGGTCCTCTT
AGTTATGCCTTCTTGTTGGCTGTATTAATGCTCAGATTCCAGCATGAAAG
GAAACTAACTGTATTGTGATTGAGAGTATAGCACCATATTATATAACCTT
CCTCCATTTATTGTCAATTTGATCCCTTCTAAAACCCAAAAATAAAAAAA
AA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920	LSM_dom_sf

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