GR407878

EST Overview
NameGR407878
Unique NameGR407878
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length384
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR407878 vs. TrEMBL
Match: C6T061_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.920e-30
Identity = 73/117 (62.39%), Postives = 78/117 (66.67%), Query Frame = -1
Query:   40 SPARSLPHLKLGFPSKPQNPFIXXXXXXXXXF--RCISFRRLQTNQKLLTVFATNPNTGGEKFANEGSDVKETSNASQGPPFLTILAGIFVFFLVCWVIGSIGMWLISLIVNVPPPK 384
            S A   PHL LGFPS PQ   I            RC  F RL  NQ+L+TVFATNPN+ GEK   EGSDV ETSNA+QGPP LTILAG FV F+VCW I SI  WLISLIVNVP PK
Sbjct:    7 SHAAPQPHLTLGFPSPPQFLSIAAPKFSPSSSTIRCKGFSRLIVNQRLVTVFATNPNSVGEKSPTEGSDVNETSNAAQGPPLLTILAGFFVLFVVCWSIWSIITWLISLIVNVPAPK 123          
BLAST of GR407878 vs. TrEMBL
Match: D7TNU0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_156.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001359001 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.960e-12
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = -1
Query:   40 LKLGFP---SKPQNPFIXXXXXXXXXFRCISFRRLQTNQKLLTVFATNPNTGGEKFANEGSDVKETSNASQGPPFLTILAGIFVFFLVCWVIGSIGMWLISLIVNVPPPK 360
            L LGF    S PQ P +          R  +  RL+  Q++  VFA+N           G D K+  + +QGPPFLTILAG+ +F LV W++GSI MWL  LIV  PP K
Sbjct:   17 LNLGFHRAISSPQLPPVSNFPCTPLSSRFNNELRLRVRQRMAVVFASNT------VYPVGGDSKKEKSDAQGPPFLTILAGLLLFLLVFWLLGSIVMWLFGLIVKSPPSK 120          
BLAST of GR407878 vs. TrEMBL
Match: A5AGI7_VITVI (Citrate synthase OS=Vitis vinifera GN=VITISV_022331 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.960e-12
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = -1
Query:   40 LKLGFP---SKPQNPFIXXXXXXXXXFRCISFRRLQTNQKLLTVFATNPNTGGEKFANEGSDVKETSNASQGPPFLTILAGIFVFFLVCWVIGSIGMWLISLIVNVPPPK 360
            L LGF    S PQ P +          R  +  RL+  Q++  VFA+N           G D K+  + +QGPPFLTILAG+ +F LV W++GSI MWL  LIV  PP K
Sbjct:  787 LNLGFHRAISSPQLPPVSNFPCTPLSSRFNNELRLRVRQRMAVVFASNT------VYPVGGDSKKEKSDAQGPPFLTILAGLLLFLLVFWLLGSIVMWLFGLIVKSPPSK 890          
The following BLAST results are available for this feature:
BLAST of GR407878 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C6T061_SOYBN7.920e-3062.39Putative uncharacterized protein OS=Glycine max PE... [more]
D7TNU0_VITVI1.960e-1241.82Whole genome shotgun sequence of line PN40024, sca... [more]
A5AGI7_VITVI1.960e-1241.82Citrate synthase OS=Vitis vinifera GN=VITISV_02233... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 23..32
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR407878 ID=GR407878; Name=GR407878; organism=Cicer arietinum; type=EST; length=384bp
ATAAAATAAACAACACATTACAACAAACAATCATGTTTATTTTGGAGGGG
GAACATTAACAATCAAGCTTATCAACCACATTCCAATGGATCCAATGACC
CAACAAACGAGGAAAAATACAAATATTCCAGCCAAAATAGTAAGGAAAGG
AGGTCCCTGGGAAGCATTGCTAGTTTCCTTTACATCTGATCCTTCATTGG
CAAATTTTTCACCTCCAGTGTTGGGGTTTGTAGCAAAAACAGTCAATAGT
TTTTGATTTGTTTGCAATCTTCTAAAGCTTATGCATCTGAAGGTGGAAAA
TGATGTTTTGAAAGTGGAAATGAAAGGATTTTGAGGTTTGGAAGGAAACC
CTAATTTGAGGTGTGGGAGTGATCTGGCAGGTGA
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