GR409252

EST Overview
NameGR409252
Unique NameGR409252
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length669
Libraries
Library NameType
LIBEST_024779 ICC1882 Slow drought stressed root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
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BLAST of GR409252 vs. TrEMBL
Match: A4Q7M2_MEDTR (CPSF A subunit, C-terminal; WD40-like OS=Medicago truncatula GN=MtrDRAFT_AC182813g2v2 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.248e-8
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   71 TGTTTWLLELQENEAAFNGGTGEYHEKE*GTKSAVGTEKGRKIPPKKSSNDGEVH 235
            TG TT LLELQENEAAF+  T  +H+KE GT  AVGT KG +  PK+S   G +H
Sbjct:  881 TGNTTCLLELQENEAAFSICTVNFHDKEYGTLLAVGTAKGLQFTPKRSLTAGFIH 935
[Close]
BLAST of GR409252 vs. TrEMBL
Match: Q2HWB0_MEDTR (CPSF A subunit, C-terminal; WD40-like OS=Medicago truncatula GN=MtrDRAFT_AC147482g39v2 PE=4 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 1.066e-7
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   71 TGTTTWLLELQENEAAFNGGTGEYHEKE*GTKSAVGTEKGRKIPPKKSSNDGEVH 235
            TG TT LLELQ+NEAAF+G T  +H+KE GT   VGT KG +  P++S   G +H
Sbjct:  312 TGNTTCLLELQDNEAAFSGCTVNFHDKEYGTLLDVGTAKGLQFTPRRSLTAGFIH 366
[Close]
BLAST of GR409252 vs. TrEMBL
Match: B9T8E6_RICCO (Spliceosomal protein sap, putative OS=Ricinus communis GN=RCOM_0386800 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.023e-7
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   71 TGTTTWLLELQENEAAFNGGTGEYHEKE*GTKSAVGTEKGRKIPPKKSSNDGEVH 235
            T  TT LLELQ+NEAAF+  T  +H+KE GT  AVGT KG +  PK+S + G +H
Sbjct:  870 TAATTCLLELQDNEAAFSVCTVNFHDKEHGTLLAVGTAKGLQFWPKRSLSAGFIH 924
[Close]
BLAST of GR409252 vs. TAIR peptide
Match: AT3G55200.1 (| Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214)

HSP 1 Score: 56.9954 bits (136), Expect = 1.068e-8
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   71 TGTTTWLLELQENEAAFNGGTGEYHEKE*GTKSAVGTEKGRKIPPKKSSNDGEVH 235
            T TTT LLELQ+NEAA++  T  +H+KE GT  AVGT KG +  PKK+   G +H
Sbjct:  870 TATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIH 924
[Close]
BLAST of GR409252 vs. TAIR peptide
Match: AT3G55220.1 (| Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20467116-20470944 REVERSE LENGTH=1214)

HSP 1 Score: 56.9954 bits (136), Expect = 1.068e-8
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:   71 TGTTTWLLELQENEAAFNGGTGEYHEKE*GTKSAVGTEKGRKIPPKKSSNDGEVH 235
            T TTT LLELQ+NEAA++  T  +H+KE GT  AVGT KG +  PKK+   G +H
Sbjct:  870 TATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIH 924
The following BLAST results are available for this feature:
BLAST of GR409252 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
A4Q7M2_MEDTR6.248e-858.18CPSF A subunit, C-terminal; WD40-like OS=Medicago ... [more]
Q2HWB0_MEDTR1.066e-754.55CPSF A subunit, C-terminal; WD40-like OS=Medicago ... [more]
B9T8E6_RICCO9.023e-754.55Spliceosomal protein sap, putative OS=Ricinus comm... [more]
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BLAST of GR409252 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G55200.11.068e-854.55| Symbols: | Cleavage and polyadenylation specifi... [more]
AT3G55220.11.068e-854.55| Symbols: | Cleavage and polyadenylation specifi... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..21
score: NAcoord: 44..53
score
NoneNo IPR availableSEGsegsegcoord: 2..19
score
NoneNo IPR availableSEGsegsegcoord: 24..39
score
NoneNo IPR availableSEGsegsegcoord: 28..43
score
NoneNo IPR availableSEGsegsegcoord: 69..80
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR409252 ID=GR409252; Name=GR409252; organism=Cicer arietinum; type=EST; length=669bp
CCCCAGAACGGATAGCCTGANAANAGGNCCTATTCCAGCAAGAAACCTTC
CCTGAAACTGAGTTAGAGCAACAGGAACTACAACCTGGCTTTTGGAGCTT
CAGGAAAATGAGGCTGCATTCAACGGAGGCACAGGGGAGTATCATGAAAA
AGAATAGGGAACTAAATCAGCTGTTGGCACAGAGAAGGGAAGGAAAATCC
CCCCCAAAAAAAGTTCAAATGATGGGGAGGTCCACCCAAAATAGGCCCCT
GGACAAAGATACGGGAGGGCGCCCTTTTTATCTAAGCCTGACCTTGGGAG
GAAAACGAGATGGCATCACCTTTTACTCAGGAGACATTTTCAATAGGGAC
AACGCCGCGAAACAAAGGTCCCCGGGATGTGGCGGGTAGATTATAATTTT
AACCCATGAGGAACCGCGTCTGTGCGTCAAAAACGAGAAATAAGAATAAT
AAGACATTATTAAAACACGAGGAACAAAAGAGGCGGTATCCCACCAAAAA
AATGCCACTAAGGACGAAGACCGATGCCCCCAAGAAGATGAAAAAAAGGA
GACGAAAAAGGTCCCAACATATTGAGACAACCACGAAACCGCCAGCCCAC
GGGGGTATAAAAAAAAGAACCACCGGAATTAAAACAGCGCAAAAAACACA
AGAAACTTTCACGCCCGCG
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