GR421038

EST Overview


Name	GR421038
Unique Name	GR421038
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	496

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR421038 vs. SwissProt
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.485e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = -2

Query:  268 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGVPL 450
            LRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI ++TKR +P LFV     RGDGV L
Sbjct:   39 LRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV-----RGDGVVL 94

HSP 2 Score: 22.3274 bits (46), Expect = 6.485e-19
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVK+R+DR+
Sbjct:   28 RIYVKMRNDRE 38

[Close]

BLAST of GR421038 vs. SwissProt
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.485e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = -2

Query:  268 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGVPL 450
            LRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI ++TKR +P LFV     RGDGV L
Sbjct:   39 LRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV-----RGDGVVL 94

HSP 2 Score: 22.3274 bits (46), Expect = 6.485e-19
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVK+R+DR+
Sbjct:   28 RIYVKMRNDRE 38

[Close]

BLAST of GR421038 vs. SwissProt
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.485e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = -2

Query:  268 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGVPL 450
            LRG+LHAYDQHLNMILGDVEE VTT+EID+ETYEEI ++TKR +P LFV     RGDGV L
Sbjct:   39 LRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFV-----RGDGVVL 94

HSP 2 Score: 22.3274 bits (46), Expect = 6.485e-19
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVK+R+DR+
Sbjct:   28 RIYVKMRNDRE 38

[Close]

BLAST of GR421038 vs. SwissProt
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.325e-14
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMIL DVEE +  VE D+ET EEI+R  KR +  LFV     RGDGV     PLRT+
Sbjct:   34 LRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFV-----RGDGVILISPPLRTS 97

HSP 2 Score: 20.4014 bits (41), Expect = 2.325e-14
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RI+VK+R DR+
Sbjct:   23 RIFVKMRQDRE 33

[Close]

BLAST of GR421038 vs. SwissProt
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 7.001e-8
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = -2

Query:  268 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGVPL 450
            L G+LHAYD+HLNM+LGD EEIVT  + ++   ++ ++T ++    LFV     RGD V L
Sbjct:   32 LNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFV-----RGDSVIL 87

HSP 2 Score: 20.4014 bits (41), Expect = 7.001e-8
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -3

Query:  462 IYVKLRSDRD 491
            +YVKLR DR+
Sbjct:   22 VYVKLRGDRE 31

[Close]

BLAST of GR421038 vs. TrEMBL
Match: C6SWG5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.051e-23
Identity = 59/69 (85.51%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFV     RGDGV     PLRTA
Sbjct:   34 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFV-----RGDGVILVSPPLRTA 97

HSP 2 Score: 24.2534 bits (51), Expect = 2.051e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TrEMBL
Match: Q5N9F1_ORYSJ (Os01g0866700 protein OS=Oryza sativa subsp. japonica GN=P0505D12.39 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.670e-23
Identity = 58/69 (84.06%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRT+PFLFV     RGDGV     PLRTA
Sbjct:   41 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFV-----RGDGVILVSPPLRTA 104

HSP 2 Score: 24.2534 bits (51), Expect = 2.670e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   30 RIYVKLRSDRE 40

[Close]

BLAST of GR421038 vs. TrEMBL
Match: B9T2G3_RICCO (Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.670e-23
Identity = 58/69 (84.06%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRTTKRTVPFLFV     RGDGV     PLRTA
Sbjct:   34 LRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTVPFLFV-----RGDGVILVSPPLRTA 97

HSP 2 Score: 24.2534 bits (51), Expect = 2.670e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TrEMBL
Match: A2WXB5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04561 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.670e-23
Identity = 58/69 (84.06%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRT+PFLFV     RGDGV     PLRTA
Sbjct:   41 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFV-----RGDGVILVSPPLRTA 104

HSP 2 Score: 24.2534 bits (51), Expect = 2.670e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   30 RIYVKLRSDRE 40

[Close]

BLAST of GR421038 vs. TrEMBL
Match: C5XQM8_SORBI (Putative uncharacterized protein Sb03g040930 OS=Sorghum bicolor GN=Sb03g040930 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.475e-23
Identity = 57/69 (82.61%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRTTKRT+PFLFV     RGDGV     PLRTA
Sbjct:   35 LRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFV-----RGDGVILVSPPLRTA 98

HSP 2 Score: 24.2534 bits (51), Expect = 3.475e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   24 RIYVKLRSDRE 34

[Close]

BLAST of GR421038 vs. TrEMBL
Match: B4FPJ2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.475e-23
Identity = 57/69 (82.61%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEE+VTTVEIDDETYEEIVRTTKRT+PFLFV     RGDGV     PLRTA
Sbjct:   35 LRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFV-----RGDGVILVSPPLRTA 98

HSP 2 Score: 24.2534 bits (51), Expect = 3.475e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   24 RIYVKLRSDRE 34

[Close]

BLAST of GR421038 vs. TrEMBL
Match: B9H7R8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831544 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.524e-23
Identity = 58/69 (84.06%), Postives = 59/69 (85.51%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTT+RTVPFLFV     RGDGV     PLRTA
Sbjct:   34 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFV-----RGDGVILVSPPLRTA 97

HSP 2 Score: 24.2534 bits (51), Expect = 4.524e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TrEMBL
Match: C6SZU6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.976e-23
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEI+TTVEIDDETYEEIVRTTKRTVPFLFV     RGDGV     PLR A
Sbjct:   34 LRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTKRTVPFLFV-----RGDGVILVSPPLRAA 97

HSP 2 Score: 24.2534 bits (51), Expect = 9.976e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TrEMBL
Match: B9GTJ5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_643482 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.690e-22
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR T+RTVPFLFV     RGDGV     PLRTA
Sbjct:   34 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATRRTVPFLFV-----RGDGVILVSPPLRTA 97

HSP 2 Score: 24.2534 bits (51), Expect = 1.690e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TrEMBL
Match: D7KJZ1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472357 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.863e-22
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = -2

Query:  262 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRT 450
            LRGKLHA+DQHLNMILGDVEE++TTVEIDDETYEEIVRTTKRTVPFLFV     RGDGV     PLRT
Sbjct:   34 LRGKLHAFDQHLNMILGDVEEVITTVEIDDETYEEIVRTTKRTVPFLFV-----RGDGVILVSPPLRT 96

HSP 2 Score: 24.2534 bits (51), Expect = 2.863e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TAIR peptide
Match: AT1G21190.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7419989-7420856 REVERSE LENGTH=97)

HSP 1 Score: 104.375 bits (259), Expect = 3.191e-24
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = -2

Query:  262 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRT 450
            LRGKLHA+DQHLNMILGDVEE++TT+EIDDETYEEIVRTTKRTVPFLFV     RGDGV     PLRT
Sbjct:   34 LRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFV-----RGDGVILVSPPLRT 96

HSP 2 Score: 24.2534 bits (51), Expect = 3.191e-24
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

[Close]

BLAST of GR421038 vs. TAIR peptide
Match: AT1G76860.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98)

HSP 1 Score: 101.293 bits (251), Expect = 2.616e-23
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = -2

Query:  259 LRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVILVSPRGDGV-----PLRTA 450
            LRGKLHA+DQHLNMILGDVEE +TTVEIDDETYEEIVRTTKRT+ FLFV     RGDGV     PLRTA
Sbjct:   34 LRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFV-----RGDGVILVSPPLRTA 97

HSP 2 Score: 24.2534 bits (51), Expect = 2.616e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3

Query:  462 RIYVKLRSDRD 494
            RIYVKLRSDR+
Sbjct:   23 RIYVKLRSDRE 33

The following BLAST results are available for this feature:

BLAST of GR421038 vs. SwissProt
BLAST of GR421038 vs. TrEMBL
BLAST of GR421038 vs. TAIR peptide

BLAST of GR421038 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
LSM3_MOUSE	6.485e-19	73.77	U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu...	[more]
LSM3_HUMAN	6.485e-19	73.77	U6 snRNA-associated Sm-like protein LSm3 OS=Homo s...	[more]
LSM3_BOVIN	6.485e-19	73.77	U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta...	[more]
LSM3_DICDI	2.325e-14	62.32	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]
LSM3_SCHPO	7.001e-8	45.90	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]

BLAST of GR421038 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SWG5_SOYBN	2.051e-23	85.51	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q5N9F1_ORYSJ	2.670e-23	84.06	Os01g0866700 protein OS=Oryza sativa subsp. japoni...	[more]
B9T2G3_RICCO	2.670e-23	84.06	Snrnp sm protein, putative OS=Ricinus communis GN=...	[more]
A2WXB5_ORYSI	2.670e-23	84.06	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5XQM8_SORBI	3.475e-23	82.61	Putative uncharacterized protein Sb03g040930 OS=So...	[more]
B4FPJ2_MAIZE	3.475e-23	82.61	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B9H7R8_POPTR	4.524e-23	84.06	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6SZU6_SOYBN	9.976e-23	82.61	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9GTJ5_POPTR	1.690e-22	82.61	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7KJZ1_ARALY	2.863e-22	80.88	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of GR421038 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G21190.1	3.191e-24	79.41	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT1G76860.1	2.616e-23	78.26	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 37..56 score
None	No IPR available	SEG	seg	seg	coord: 38..64 score
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 1..49 score: 1.6
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..61 score: 2.2
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 1..30 score: 6.1
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 1..49 score: 2.3

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR421038 ID=GR421038; Name=GR421038; organism=Cicer arietinum; type=EST; length=496bp
ACTTAAACTAATATTAACAGTCTTATGGAGCCTGCTCACAGACAGCTCCA
AGCTGAGCCTCCAAATGCTAAATTCAAGAGCATGCCATGATTGCAAACAA
CAAGGAGAATACAAAAACTGAAAGTTTTACTAGCAAACATGCCAATTGAA
GATAGTCTAATCATAAGCAATGACGTCACTAGTTAAAAAGTTATACAATT
TTTGTGATAGTTGTCATTAAAATGATTATAATACAAAGTTCATCATCAGT
CCATGTCATGCAGTCCTCAGTGGCACCCCATCTCCCCTCGGGGAAACCAA
TATAACAAACAGGAAAGGAACTGTCCTCTTTGTAGTCCTAACAATTTCTT
CATATGTTTCATCATCAATTTCAACAGTGGTAACAATTTCTTCAACATCA
CCAAGAATCATATTAAGATGCTGATCATAAGCGTGAAGCTTGCCACGAAG
TTAGACTGCTCGTCGCGATCAGAACGGAGTTTAACGTAAATACGTT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR010920	LSM_dom_sf

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