GR404159

EST Overview


Name	GR404159
Unique Name	GR404159
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	454

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.226e-28
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSP GGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.443e-27
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHH+RVLIRQRHIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSP GGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.350e-25
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = -3

Query:  261 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNL 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+NL
Sbjct:  116 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 5.131e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:  115 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.131e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:  115 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 5.131e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:  115 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 5.131e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:  115 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.131e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FK G+AKSIHHARVLIRQRHIRV +QVVNIPSF+VR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:  115 FKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.752e-25
Identity = 50/62 (80.65%), Postives = 60/62 (96.77%), Query Frame = -3

Query:  267 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRR 452
            +K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSP GGGRPGRV+R+
Sbjct:  112 YKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173

[Close]

BLAST of GR404159 vs. SwissProt
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.143e-24
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = -3

Query:  264 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 437
            AKS+HHARVLIRQRHIRVGRQVVN+PSFMVR+DSQKHIDFSL SP GGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58

[Close]

BLAST of GR404159 vs. TrEMBL
Match: C6T193_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.164e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKR+N
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 178

HSP 2 Score: 25.0238 bits (53), Expect = 2.164e-29
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = -1

Query:  203 RLPPRKHLVVTEMRRMRIK 259
            R   +K LV TEMRRM+IK
Sbjct:  180 RAAAKKLLVETEMRRMKIK 198

[Close]

BLAST of GR404159 vs. TrEMBL
Match: B8LND2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.139e-28
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = -3

Query:  261 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNL 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKR+NL
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNL 179

[Close]

BLAST of GR404159 vs. TrEMBL
Match: A9NMP0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.942e-28
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = -3

Query:  261 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNL 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKR+N+
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNM 179

[Close]

BLAST of GR404159 vs. TrEMBL
Match: C6SW41_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.313e-28
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKR+N
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: B9R982_RICCO (40S ribosomal protein S9, putative OS=Ricinus communis GN=RCOM_1514770 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.651e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVR+DSQKHIDFSLTSP GGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRIDSQKHIDFSLTSPFGGGRPGRVKRRN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: C6TFG0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.381e-28
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLI+QRHIRVGRQVVNIPSF+VRVDSQKHIDFSLTSPLGGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: B9S8S9_RICCO (40S ribosomal protein S9, putative OS=Ricinus communis GN=RCOM_0835620 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.640e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKR+N
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: B9RUP5_RICCO (40S ribosomal protein S9, putative OS=Ricinus communis GN=RCOM_0855200 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.640e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKR+N
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: D7FBA7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008028001 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.644e-27
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF+VR+DSQKHIDFSLTSPLGGGRPGRVKR+N
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKN 178

[Close]

BLAST of GR404159 vs. TrEMBL
Match: B7FMD4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.147e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = -3

Query:  261 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNL 452
            FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGG PGRVKR+NL
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNL 179

[Close]

BLAST of GR404159 vs. TAIR peptide
Match: AT5G39850.1 (| Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197)

HSP 1 Score: 124.405 bits (311), Expect = 2.621e-29
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHHARVLIRQRHIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSP GGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178

[Close]

BLAST of GR404159 vs. TAIR peptide
Match: AT5G15200.1 (| Symbols: | Ribosomal protein S4 | chr5:4935124-4936334 REVERSE LENGTH=198)

HSP 1 Score: 121.709 bits (304), Expect = 1.699e-28
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  264 FKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRN 452
            FKSGMAKSIHH+RVLIRQRHIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSP GGGRPGRVKRRN
Sbjct:  116 FKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178

The following BLAST results are available for this feature:

BLAST of GR404159 vs. SwissProt
BLAST of GR404159 vs. TrEMBL
BLAST of GR404159 vs. TAIR peptide

BLAST of GR404159 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS92_ARATH	2.226e-28	93.65	40S ribosomal protein S9-2 OS=Arabidopsis thaliana...	[more]
RS91_ARATH	1.443e-27	90.48	40S ribosomal protein S9-1 OS=Arabidopsis thaliana...	[more]
RS9_DROME	1.350e-25	85.94	40S ribosomal protein S9 OS=Drosophila melanogaste...	[more]
RS9_RAT	5.131e-25	85.71	40S ribosomal protein S9 OS=Rattus norvegicus GN=R...	[more]
RS9_PAPAN	5.131e-25	85.71	40S ribosomal protein S9 OS=Papio anubis GN=RPS9 P...	[more]
RS9_MOUSE	5.131e-25	85.71	40S ribosomal protein S9 OS=Mus musculus GN=Rps9 P...	[more]
RS9_HUMAN	5.131e-25	85.71	40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P...	[more]
RS9_BOVIN	5.131e-25	85.71	40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=...	[more]
RS9_PODAN	8.752e-25	80.65	40S ribosomal protein S9 OS=Podospora anserina GN=...	[more]
RS9_TOBAC	1.143e-24	89.66	40S ribosomal protein S9 (Fragment) OS=Nicotiana t...	[more]

BLAST of GR404159 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T193_SOYBN	2.164e-29	98.41	Putative uncharacterized protein OS=Glycine max PE...	[more]
B8LND2_PICSI	1.139e-28	98.44	Putative uncharacterized protein OS=Picea sitchens...	[more]
A9NMP0_PICSI	1.942e-28	96.88	Putative uncharacterized protein OS=Picea sitchens...	[more]
C6SW41_SOYBN	3.313e-28	98.41	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9R982_RICCO	5.651e-28	96.83	40S ribosomal protein S9, putative OS=Ricinus comm...	[more]
C6TFG0_SOYBN	7.381e-28	96.83	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9S8S9_RICCO	9.640e-28	96.83	40S ribosomal protein S9, putative OS=Ricinus comm...	[more]
B9RUP5_RICCO	9.640e-28	96.83	40S ribosomal protein S9, putative OS=Ricinus comm...	[more]
D7FBA7_VITVI	1.644e-27	95.24	Whole genome shotgun sequence of line PN40024, sca...	[more]
B7FMD4_MEDTR	2.147e-27	95.31	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of GR404159 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G39850.1	2.621e-29	93.65	\| Symbols: \| Ribosomal protein S4 \| chr5:15950053...	[more]
AT5G15200.1	1.699e-28	90.48	\| Symbols: \| Ribosomal protein S4 \| chr5:4935124-...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 1..10 score: NAcoord: 12..23 score: NAcoord: 55..66 score
None	No IPR available	SEG	seg	seg	coord: 27..33 score
None	No IPR available	GENE3D	3.10.290.10	no description	coord: 1..37 score: 1
None	No IPR available	PANTHER	PTHR11831:SF3	40S RIBOSOMAL PROTEIN S9	coord: 1..80 score: 2.2
None	No IPR available	SEG	seg	seg	coord: 65..71 score: NAcoord: 73..82 score
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 1..47 score: 1
IPR002942	RNA-binding S4	PFAM	PF01479	S4	coord: 2..38 score: 2.8
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..80 score: 2.2

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR404159 ID=GR404159; Name=GR404159; organism=Cicer arietinum; type=EST; length=454bp
GTTCGGGAAAAAACCTTAAAAAAATAATTTAGTTCAAAAACAACATAATA
TCTCAGGCAAAGTACATTCTCAAATTAGTACCAAGGATGAAAAAAACAAA
ATAGTATAGCAGTCAATAATGATAGACTAGGGACAAAATCATAACAGCTG
ACAAAAGATTTAACTTCAATAGAGAATGCAACTATGATAATGGCAGCAAC
AGTTTAATCCTCATCCTCCTCATCTCCGTCACCACCAGATGCTTTCTTGG
CGGCAGCCTTGAGATTCCTTCTCTTCACTCTTCCAGGACGTCCACCACCA
AGGGGACTTGTGAGTGAAAAGTCAATGTGCTTCTGTGAGTCAACCCTAAC
CATGAAAGAGGGGATGTTCACCACCTGCCTACCAACCCTGATATGCCTCT
GTCTGATGAGAACCCTAGCATGATGAATAGACTTAGCCATACCAGATTTA
AAAA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR022801	Ribosomal_uS4

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