GR407378

EST Overview


Name	GR407378
Unique Name	GR407378
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	333

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.072e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV
Sbjct:  148 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSH+KPYVR+KGRKFEKARG+RKSRGF+V
Sbjct:  152 GPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.200e-13
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHS+TKPYVR KGRKFEKARG+RKSRGF+V
Sbjct:  152 GPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.381e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            GPAPGVPHSHTKPYVRSKGRKFE+ARGRRKSR ++
Sbjct:  153 GPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.019e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            GPAPGVPHSHTKPYVRSKGRKFE+ARGRR SR ++
Sbjct:  153 GPAPGVPHSHTKPYVRSKGRKFERARGRRASRAYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            GPAPGVPHSHTKP VRSKGRKFE+ARGRRKS G++
Sbjct:  153 GPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            GPAPGVPHSHTKP+VRSKGRKFE+ARGRR SR ++
Sbjct:  153 GPAPGVPHSHTKPHVRSKGRKFERARGRRASRAYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            G APG PHSHTKPYVRSKGRKFE+ARGRR SRG++
Sbjct:  153 GKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            G APG PHSHTKPYVRSKGRKFE+ARGRR SRG++
Sbjct:  153 GKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187

[Close]

BLAST of GR407378 vs. SwissProt
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.995e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 105
            G APG PHSHTKPYVRSKGRKFE+ARGRR SRG++
Sbjct:  153 GKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187

[Close]

BLAST of GR407378 vs. TrEMBL
Match: D4P866_LINUS (Putative ribosomal protein L18 (Fragment) OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.967e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGFRV
Sbjct:  119 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV 154

[Close]

BLAST of GR407378 vs. TrEMBL
Match: A6N9Y7_ORNPR (Ribosomal protein L18 OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.181e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFE+ARGRRKSRGF+V
Sbjct:  153 GPAPGVPHSHTKPYVRSKGRKFERARGRRKSRGFKV 188

[Close]

BLAST of GR407378 vs. TrEMBL
Match: C5X5J2_SORBI (Ribosomal protein L18 OS=Sorghum bicolor GN=Sb02g042750 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct:  152 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 187

[Close]

BLAST of GR407378 vs. TrEMBL
Match: C5X0Q5_SORBI (Ribosomal protein L18 OS=Sorghum bicolor GN=Sb01g035860 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct:  152 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 187

[Close]

BLAST of GR407378 vs. TrEMBL
Match: C4J2T3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct:   99 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 134

[Close]

BLAST of GR407378 vs. TrEMBL
Match: B9RFD6_RICCO (60S ribosomal protein L18, putative OS=Ricinus communis GN=RCOM_1433890 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFE+ARGRR SRGFRV
Sbjct:  368 GPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 403

[Close]

BLAST of GR407378 vs. TrEMBL
Match: B6SJ08_MAIZE (Ribosomal protein L18 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct:  152 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 187

[Close]

BLAST of GR407378 vs. TrEMBL
Match: B4FCY7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.838e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct:   56 GPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 91

[Close]

BLAST of GR407378 vs. TrEMBL
Match: D7L3W4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477850 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.969e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSH+KPYVR KGRKFEKARGRRKSRGF+V
Sbjct:  152 GPAPGVPHSHSKPYVRGKGRKFEKARGRRKSRGFKV 187

[Close]

BLAST of GR407378 vs. TrEMBL
Match: C6T531_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.969e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVR+KGRKFE+ARGRR SRGFRV
Sbjct:  152 GPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV 187

[Close]

BLAST of GR407378 vs. TAIR peptide
Match: AT3G05590.1 (| Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187)

HSP 1 Score: 74.7146 bits (182), Expect = 1.295e-14
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSH+KPYVR+KGRKFEKARG+RKSRGF+V
Sbjct:  152 GPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of GR407378 vs. TAIR peptide
Match: AT5G27850.1 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr5:9873169-9874297 FORWARD LENGTH=187)

HSP 1 Score: 72.7886 bits (177), Expect = 4.920e-14
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHS+TKPYVR KGRKFEKARG+RKSRGF+V
Sbjct:  152 GPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of GR407378 vs. TAIR peptide
Match: AT2G47570.2 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr2:19515898-19516717 REVERSE LENGTH=135)

HSP 1 Score: 67.0106 bits (162), Expect = 2.700e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVR  G+K E ARGRR+SRGF+V
Sbjct:  100 GPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 135

[Close]

BLAST of GR407378 vs. TAIR peptide
Match: AT2G47570.1 (| Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr2:19515898-19516717 REVERSE LENGTH=135)

HSP 1 Score: 67.0106 bits (162), Expect = 2.700e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1

Query:    1 GPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 108
            GPAPGVPHSHTKPYVR  G+K E ARGRR+SRGF+V
Sbjct:  100 GPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of GR407378 vs. SwissProt
BLAST of GR407378 vs. TrEMBL
BLAST of GR407378 vs. TAIR peptide

BLAST of GR407378 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RL18_CICAR	5.072e-15	100.00	60S ribosomal protein L18 (Fragment) OS=Cicer arie...	[more]
RL182_ARATH	1.632e-13	88.89	60S ribosomal protein L18-2 OS=Arabidopsis thalian...	[more]
RL183_ARATH	6.200e-13	88.89	60S ribosomal protein L18-3 OS=Arabidopsis thalian...	[more]
RL18_IXOSC	1.381e-12	88.57	60S ribosomal protein L18 OS=Ixodes scapularis GN=...	[more]
RL18_CAEEL	4.019e-12	85.71	60S ribosomal protein L18 OS=Caenorhabditis elegan...	[more]
RL18_LYSTE	1.169e-11	85.71	60S ribosomal protein L18 OS=Lysiphlebus testaceip...	[more]
RL18_CAEBR	1.527e-11	82.86	60S ribosomal protein L18 OS=Caenorhabditis briggs...	[more]
RL18_RAT	1.995e-11	82.86	60S ribosomal protein L18 OS=Rattus norvegicus GN=...	[more]
RL18_MOUSE	1.995e-11	82.86	60S ribosomal protein L18 OS=Mus musculus GN=Rpl18...	[more]
RL18_MACFA	1.995e-11	82.86	60S ribosomal protein L18 OS=Macaca fascicularis G...	[more]

BLAST of GR407378 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D4P866_LINUS	3.967e-13	97.22	Putative ribosomal protein L18 (Fragment) OS=Linum...	[more]
A6N9Y7_ORNPR	5.181e-13	94.44	Ribosomal protein L18 OS=Ornithodoros parkeri PE=2...	[more]
C5X5J2_SORBI	8.838e-13	94.44	Ribosomal protein L18 OS=Sorghum bicolor GN=Sb02g0...	[more]
C5X0Q5_SORBI	8.838e-13	94.44	Ribosomal protein L18 OS=Sorghum bicolor GN=Sb01g0...	[more]
C4J2T3_MAIZE	8.838e-13	94.44	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B9RFD6_RICCO	8.838e-13	94.44	60S ribosomal protein L18, putative OS=Ricinus com...	[more]
B6SJ08_MAIZE	8.838e-13	94.44	Ribosomal protein L18 OS=Zea mays PE=2 SV=1	[more]
B4FCY7_MAIZE	8.838e-13	94.44	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
D7L3W4_ARALY	1.969e-12	91.67	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
C6T531_SOYBN	1.969e-12	91.67	Putative uncharacterized protein OS=Glycine max PE...	[more]

BLAST of GR407378 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G05590.1	1.295e-14	88.89	\| Symbols: RPL18 \| ribosomal protein L18 \| chr3:16...	[more]
AT5G27850.1	4.920e-14	88.89	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]
AT2G47570.2	2.700e-12	80.56	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]
AT2G47570.1	2.700e-12	80.56	\| Symbols: \| Ribosomal protein L18e/L15 superfami...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 22..38 score: NAcoord: 56..73 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR407378 ID=GR407378; Name=GR407378; organism=Cicer arietinum; type=EST; length=333bp
GGACCAGCTCCTGGTGTGCCACACAGCCACACCAAGCCCTATGTGCGCTC
TAAGGGCCGGAAATTTGAGAAGGCAAGAGGAAGACGAAAGAGCAGAGGCT
TTAGAGTTTGAGTTTTGGAGCTCAATTTTGAAGGACCTTTCCTTTTATCT
CATGATCATTATGTATTTTCTTCCTGTGTTGTTGGAACAATTTGTTTTGT
TTTTATTTTTCCTTCTCCCCAATGGAAAAAAGAATGAAGCGCCGTCCGAA
CAATTTTGTTTTAGCCCAAACACTGTTCTGATTTTTCTAGAGAATTAATG
AGTAACTTTTTATTCAAGGATTTATCTTTACCG

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