GR421015

EST Overview


Name	GR421015
Unique Name	GR421015
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	503

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR421015 vs. SwissProt
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.995e-8
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3

Query:  295 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGD 486
            +RIYV +   R+     HAYDQHLNMILGDVEE VTT+EID+E          +    LFVRGD
Sbjct:   27 ERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGD 90

[Close]

BLAST of GR421015 vs. SwissProt
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.995e-8
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3

Query:  295 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGD 486
            +RIYV +   R+     HAYDQHLNMILGDVEE VTT+EID+E          +    LFVRGD
Sbjct:   27 ERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGD 90

[Close]

BLAST of GR421015 vs. SwissProt
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 1.995e-8
Identity = 34/64 (53.12%), Postives = 40/64 (62.50%), Query Frame = -3

Query:  295 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGD 486
            +RIYV +   R+     HAYDQHLNMILGDVEE VTT+EID+E          +    LFVRGD
Sbjct:   27 ERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGD 90

[Close]

BLAST of GR421015 vs. TrEMBL
Match: C6SWG5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.839e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEIVTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of GR421015 vs. TrEMBL
Match: Q5N9F1_ORYSJ (Os01g0866700 protein OS=Oryza sativa subsp. japonica GN=P0505D12.39 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEIVTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   29 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104

[Close]

BLAST of GR421015 vs. TrEMBL
Match: B9T2G3_RICCO (Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 42/76 (55.26%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEE+VTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of GR421015 vs. TrEMBL
Match: B9H7R8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831544 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEIVTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of GR421015 vs. TrEMBL
Match: B9GTJ5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_643482 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEIVTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of GR421015 vs. TrEMBL
Match: A2WXB5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04561 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEIVTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   29 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104

[Close]

BLAST of GR421015 vs. TrEMBL
Match: C5XQM8_SORBI (Putative uncharacterized protein Sb03g040930 OS=Sorghum bicolor GN=Sb03g040930 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.137e-10
Identity = 42/76 (55.26%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEE+VTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   23 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98

[Close]

BLAST of GR421015 vs. TrEMBL
Match: B4FPJ2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.137e-10
Identity = 42/76 (55.26%), Postives = 48/76 (63.16%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEE+VTTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   23 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98

[Close]

BLAST of GR421015 vs. TrEMBL
Match: C6SZU6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.128e-10
Identity = 41/76 (53.95%), Postives = 47/76 (61.84%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HAYDQHLNMILGDVEEI+TTVEIDDE     +    +   FLFVRGD       PLR A
Sbjct:   22 ERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRAA 97

[Close]

BLAST of GR421015 vs. TrEMBL
Match: C1EF33_9CHLO (Predicted protein OS=Micromonas sp. RCC299 GN=MICPUN_95751 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.557e-9
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = -3

Query:  262 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRT 486
            +R+YV +   R+     HAYDQHLNMILGDVEE +TTVEIDDE     +    +   FLFVRGD       PLRT
Sbjct:   21 ERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIIKTTKRAVRFLFVRGDAVTLVSPPLRT 95

[Close]

BLAST of GR421015 vs. TAIR peptide
Match: AT1G76860.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98)

HSP 1 Score: 65.4698 bits (158), Expect = 1.801e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = -3

Query:  259 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRTA 486
            +RIYV +   R+     HA+DQHLNMILGDVEE +TTVEIDDE     +    +   FLFVRGD       PLRTA
Sbjct:   22 ERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of GR421015 vs. TAIR peptide
Match: AT1G21190.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7419989-7420856 REVERSE LENGTH=97)

HSP 1 Score: 64.6994 bits (156), Expect = 3.072e-11
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = -3

Query:  262 KRIYVLIDKLRQA*TSWHAYDQHLNMILGDVEEIVTTVEIDDEKKLLGLI*VPQRGHFLFVRGDWFPRG*YPLRT 486
            +RIYV +   R+     HA+DQHLNMILGDVEE++TT+EIDDE     +    +   FLFVRGD       PLRT
Sbjct:   22 ERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of GR421015 vs. SwissProt
BLAST of GR421015 vs. TrEMBL
BLAST of GR421015 vs. TAIR peptide

BLAST of GR421015 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
LSM3_MOUSE	1.995e-8	53.13	U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu...	[more]
LSM3_HUMAN	1.995e-8	53.13	U6 snRNA-associated Sm-like protein LSm3 OS=Homo s...	[more]
LSM3_BOVIN	1.995e-8	53.13	U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta...	[more]

BLAST of GR421015 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SWG5_SOYBN	1.839e-10	56.58	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q5N9F1_ORYSJ	2.402e-10	56.58	Os01g0866700 protein OS=Oryza sativa subsp. japoni...	[more]
B9T2G3_RICCO	2.402e-10	55.26	Snrnp sm protein, putative OS=Ricinus communis GN=...	[more]
B9H7R8_POPTR	2.402e-10	56.58	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GTJ5_POPTR	2.402e-10	56.58	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A2WXB5_ORYSI	2.402e-10	56.58	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5XQM8_SORBI	3.137e-10	55.26	Putative uncharacterized protein Sb03g040930 OS=So...	[more]
B4FPJ2_MAIZE	3.137e-10	55.26	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
C6SZU6_SOYBN	9.128e-10	53.95	Putative uncharacterized protein OS=Glycine max PE...	[more]
C1EF33_9CHLO	1.557e-9	52.00	Predicted protein OS=Micromonas sp. RCC299 GN=MICP...	[more]

BLAST of GR421015 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G76860.1	1.801e-11	52.63	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT1G21190.1	3.072e-11	50.67	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 2..17 score
None	No IPR available	SEG	seg	seg	coord: 43..56 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR421015 ID=GR421015; Name=GR421015; organism=Cicer arietinum; type=EST; length=503bp
ATGTAACAATACTCTAAAATAATCTTATGGAGCGCTGCAGCCACAGCTCC
AAAAAGCCTTGTTCAAGAGCATGCCATGATTCTCATGCACTAAAACTGAA
AGTTTTAGGAGAATACAAAGCAAACAACAATTGAACACTAGCAAACATGC
GATAGTAATGACGTCTAATCATAAGCCACTAGTTAAAAAGTTATACAATT
TTTGTGATAGTTGTATAATATCATTAAAATGATCAAAGTTCATCATCAGT
CCATGTCATGCAGTCCTCAGTGGATATCACCCCCGGGGAAACCAATCTCC
CCTAACAAACAGGAAATGTCCTCTTTGTGGAACTCATATGAGTCCTAACA
ATTTCTTTTCATCATCAATTTCAACAGTGGTAACAATTTCTTCAACATCA
CCAAGAATCATATTAAGATGCTGATCATAAGCGTGCCACGAAGTTCAAGC
TTGACGGAGTTTATCGATCAGAACGTAAATACGTTTGAGTCTTACGTCGA
GAC

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